Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00210 * 2 1 4 4 H 1.48499 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47002 * 299.99734 * 3 2 1 6 6 H 1.48496 * 109.47031 * 59.99837 * 3 2 1 7 7 C 1.37882 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99775 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00028 * 359.72327 * 7 2 1 10 10 N 1.46898 * 109.46973 * 174.98389 * 9 7 2 11 11 C 1.46900 * 110.99853 * 162.29629 * 10 9 7 12 12 C 1.53008 * 109.47094 * 190.00089 * 11 10 9 13 13 C 1.52996 * 109.46916 * 180.02562 * 12 11 10 14 14 H 1.08999 * 115.55548 * 330.67636 * 13 12 11 15 15 C 1.53001 * 117.49563 * 116.37877 * 13 12 11 16 16 C 1.53004 * 60.00088 * 107.49038 * 15 13 12 17 17 H 1.09001 * 117.49881 * 107.48550 * 16 15 13 18 18 C 1.52995 * 117.51921 * 252.52232 * 16 15 13 19 19 C 1.52999 * 117.50100 * 197.37514 * 18 16 15 20 20 C 1.52991 * 117.50135 * 128.71200 * 18 16 15 21 21 C 1.46892 * 111.00290 * 286.25458 * 10 9 7 22 22 C 1.53004 * 117.50273 * 142.07092 * 21 10 9 23 23 C 1.53002 * 117.49991 * 73.41330 * 21 10 9 24 24 H 0.97011 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47226 * 294.98627 * 9 7 2 26 26 H 1.08998 * 109.47125 * 54.98877 * 9 7 2 27 27 H 1.08993 * 109.47279 * 310.00330 * 11 10 9 28 28 H 1.08998 * 109.46679 * 70.00602 * 11 10 9 29 29 H 1.08993 * 109.47254 * 300.00256 * 12 11 10 30 30 H 1.08998 * 109.46939 * 60.00672 * 12 11 10 31 31 H 1.09004 * 117.49786 * 214.97638 * 15 13 12 32 32 H 1.08997 * 117.50354 * 0.02562 * 15 13 12 33 33 H 1.09003 * 115.54805 * 343.04269 * 18 16 15 34 34 H 1.09000 * 117.49399 * 359.97438 * 19 18 16 35 35 H 1.08994 * 117.50175 * 145.01502 * 19 18 16 36 36 H 1.09001 * 117.49891 * 214.97850 * 20 18 16 37 37 H 1.08999 * 117.49923 * 359.97438 * 20 18 16 38 38 H 1.08996 * 115.55148 * 287.74029 * 21 10 9 39 39 H 1.09010 * 117.49637 * 359.97438 * 22 21 10 40 40 H 1.08992 * 117.50225 * 145.01750 * 22 21 10 41 41 H 1.09007 * 117.49341 * 214.97933 * 23 21 10 42 42 H 1.08995 * 117.49888 * 359.96803 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0074 10 7 2.2003 -3.6134 -0.1145 11 6 1.5824 -4.8794 0.3019 12 6 2.6577 -5.9635 0.4007 13 6 2.0140 -7.2822 0.8337 14 1 1.1236 -7.1890 1.4555 15 6 2.0692 -8.4520 -0.1509 16 6 2.9438 -8.4668 1.1044 17 1 2.6649 -9.1530 1.9041 18 6 4.4461 -8.2417 0.9220 19 6 5.3667 -8.6505 2.0736 20 6 5.1099 -7.1689 1.7874 21 6 2.7267 -3.7093 -1.4825 22 6 4.2002 -4.0871 -1.6477 23 6 3.7417 -2.6532 -1.9246 24 1 -0.4851 0.8401 -0.0004 25 1 0.6972 -2.5941 0.9415 26 1 0.5551 -2.5214 -0.8313 27 1 1.1072 -4.7494 1.2741 28 1 0.8333 -5.1766 -0.4320 29 1 3.1329 -6.0936 -0.5715 30 1 3.4068 -5.6663 1.1346 31 1 1.2149 -9.1286 -0.1771 32 1 2.5644 -8.2823 -1.1069 33 1 4.8212 -8.3728 -0.0930 34 1 4.9019 -9.0794 2.9614 35 1 6.3475 -9.0501 1.8164 36 1 5.9221 -6.5943 1.3419 37 1 4.4763 -6.6230 2.4864 38 1 2.0257 -4.0781 -2.2312 39 1 4.7791 -4.2641 -0.7411 40 1 4.4685 -4.7041 -2.5052 41 1 3.7084 -2.3275 -2.9643 42 1 4.0183 -1.8869 -1.2005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714823446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = 57.848807 kcal Electronic energy + Delta-G solvation = -18471.989532 eV Core-core repulsion = 15839.621130 eV Total energy + Delta-G solvation = -2632.368402 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06593 -39.05106 -36.26703 -35.33655 -34.42511 -31.37869 -28.28847 -24.71127 -24.26495 -24.01298 -23.10847 -22.95874 -21.96403 -20.95494 -19.97002 -18.54412 -16.76286 -16.61641 -16.42116 -16.28985 -16.08404 -15.43127 -14.84087 -14.47768 -14.36940 -13.83549 -13.71080 -13.43403 -13.01351 -12.70163 -12.63081 -12.40901 -12.27165 -12.19360 -12.09529 -12.09018 -11.67439 -11.52210 -11.40141 -11.16744 -10.98015 -10.70175 -10.53585 -10.45046 -10.23037 -9.01736 -8.15389 -6.23180 1.41211 1.41912 1.55116 2.42264 2.75428 3.06963 3.13848 3.16999 3.26480 3.69641 3.91043 4.02890 4.16795 4.20598 4.26920 4.29092 4.34231 4.46018 4.51153 4.57911 4.64665 4.70298 4.85168 4.88061 4.90324 4.94629 5.02709 5.10958 5.12041 5.18332 5.21993 5.30110 5.34820 5.36370 5.40556 5.42921 5.48414 5.56459 5.79218 6.12242 6.44341 6.68710 6.93276 7.45113 8.96018 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.029656 B = 0.004849 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.946538 B = 5773.274011 C = 5974.450402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.209 3.791 10 N -0.514 5.514 11 C 0.062 3.938 12 C -0.063 4.063 13 C -0.157 4.157 14 H 0.097 0.903 15 C -0.167 4.167 16 C -0.114 4.114 17 H 0.111 0.889 18 C -0.125 4.125 19 C -0.169 4.169 20 C -0.182 4.182 21 C 0.004 3.996 22 C -0.140 4.140 23 C -0.169 4.169 24 H 0.261 0.739 25 H -0.004 1.004 26 H -0.039 1.039 27 H 0.053 0.947 28 H 0.013 0.987 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.410 -17.057 -0.070 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.542 4.542 8 H 0.090 0.910 9 C 0.083 3.917 10 N -0.238 5.238 11 C -0.066 4.066 12 C -0.100 4.100 13 C -0.175 4.175 14 H 0.115 0.885 15 C -0.204 4.204 16 C -0.132 4.132 17 H 0.129 0.871 18 C -0.143 4.143 19 C -0.206 4.206 20 C -0.219 4.219 21 C -0.105 4.105 22 C -0.178 4.178 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.014 0.986 26 H -0.022 1.022 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.659 -16.848 0.253 19.422 hybrid contribution -1.180 1.087 -0.444 1.665 sum 8.479 -15.761 -0.191 17.898 Atomic orbital electron populations 1.70111 1.07796 1.27500 1.52812 1.25893 0.95629 1.03046 0.95340 0.85405 0.79223 0.78975 0.77486 1.18417 1.20667 1.20750 1.21595 0.93866 0.90440 1.48324 0.90992 1.19367 0.89861 0.89447 0.93029 1.61859 1.37226 1.03365 1.21355 1.22084 0.96055 0.89942 0.98525 1.21008 0.96600 0.90754 1.01673 1.22344 1.01079 0.90185 1.03933 0.88498 1.23166 1.02262 1.00881 0.94086 1.21851 0.90679 1.00519 1.00116 0.87138 1.21678 0.91570 1.04608 0.96428 1.23065 1.00843 0.97269 0.99444 1.22955 1.03137 0.92144 1.03664 1.22107 0.92178 1.06138 0.90107 1.23046 0.94543 0.97177 1.02990 1.23039 1.03120 0.93189 1.01322 0.92996 0.98564 1.02162 0.92831 0.96841 0.91457 0.91095 0.87975 0.88758 0.87650 0.88518 0.87815 0.88752 0.89695 0.92018 0.88664 0.87017 0.88871 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.50 -28.67 8.04 25.60 0.21 -28.46 16 8 H 0.07 3.99 5.50 -2.91 -0.02 3.97 16 9 C 0.21 11.48 4.75 85.56 0.41 11.89 16 10 N -0.51 -22.74 4.58 -875.54 -4.01 -26.74 16 11 C 0.06 2.33 4.91 86.31 0.42 2.75 16 12 C -0.06 -1.82 4.20 30.60 0.13 -1.69 16 13 C -0.16 -3.77 5.72 -10.79 -0.06 -3.83 16 14 H 0.10 2.39 8.07 -2.39 -0.02 2.38 16 15 C -0.17 -3.35 9.90 30.60 0.30 -3.05 16 16 C -0.11 -2.25 5.87 -10.79 -0.06 -2.31 16 17 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.12 -2.37 5.25 -10.80 -0.06 -2.42 16 19 C -0.17 -2.80 10.26 30.62 0.31 -2.49 16 20 C -0.18 -3.69 8.44 30.62 0.26 -3.44 16 21 C 0.00 0.15 4.27 44.92 0.19 0.34 16 22 C -0.14 -4.29 8.92 30.62 0.27 -4.01 16 23 C -0.17 -6.37 9.40 30.62 0.29 -6.08 16 24 H 0.26 15.11 8.31 -92.70 -0.77 14.33 16 25 H 0.00 -0.22 7.77 -2.39 -0.02 -0.24 16 26 H -0.04 -2.39 8.03 -2.39 -0.02 -2.41 16 27 H 0.05 2.09 7.84 -2.39 -0.02 2.07 16 28 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 29 H 0.07 1.90 6.11 -2.39 -0.01 1.89 16 30 H 0.07 2.14 5.64 -2.39 -0.01 2.12 16 31 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.09 1.88 8.03 -2.39 -0.02 1.86 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.96 7.31 -2.39 -0.02 1.94 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 42 H 0.09 3.77 5.63 -2.39 -0.01 3.76 16 Total: -1.00 -63.49 331.88 2.34 -61.15 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.97 Total: 18.70 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 3.07 Total: -42.48 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.72 Total: -84.26 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.49 2.34 -61.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.995 kcal (2) G-P(sol) polarization free energy of solvation -63.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds