Wall clock time and date at job start Mon Mar 30 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00460 * 2 1 4 4 H 1.48509 * 109.46842 * 270.00222 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99664 * 3 2 1 6 6 H 1.48491 * 109.47427 * 150.00133 * 3 2 1 7 7 C 1.37883 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99659 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46941 * 174.12362 * 9 7 2 11 11 C 1.46904 * 111.00074 * 159.76476 * 10 9 7 12 12 C 1.52993 * 109.47497 * 190.00244 * 11 10 9 13 13 C 1.53002 * 109.47481 * 180.02562 * 12 11 10 14 14 H 1.09002 * 115.55563 * 29.30987 * 13 12 11 15 15 C 1.52998 * 117.49923 * 243.62380 * 13 12 11 16 16 C 1.52993 * 117.49893 * 175.00186 * 13 12 11 17 17 H 1.09007 * 117.49831 * 215.00149 * 16 13 12 18 18 C 1.52997 * 117.50420 * 359.97438 * 16 13 12 19 19 C 1.53000 * 117.49803 * 300.00450 * 18 16 13 20 20 C 1.52994 * 59.99991 * 252.50350 * 19 18 16 21 21 C 1.46896 * 111.00474 * 283.72153 * 10 9 7 22 22 C 1.53006 * 117.49772 * 138.74188 * 21 10 9 23 23 C 1.53001 * 117.49699 * 70.08463 * 21 10 9 24 24 H 0.97005 * 119.99982 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46857 * 54.13190 * 9 7 2 26 26 H 1.08997 * 109.47477 * 294.12821 * 9 7 2 27 27 H 1.09007 * 109.46814 * 70.00335 * 11 10 9 28 28 H 1.08996 * 109.47163 * 310.00547 * 11 10 9 29 29 H 1.09007 * 109.47015 * 60.00214 * 12 11 10 30 30 H 1.09006 * 109.47309 * 300.00381 * 12 11 10 31 31 H 1.09001 * 117.49896 * 145.01561 * 15 13 12 32 32 H 1.08998 * 117.49652 * 0.02562 * 15 13 12 33 33 H 1.09004 * 115.55890 * 85.68729 * 18 16 13 34 34 H 1.09004 * 117.49698 * 145.01637 * 19 18 16 35 35 H 1.08999 * 117.49818 * 359.97438 * 19 18 16 36 36 H 1.09001 * 117.49493 * 107.48497 * 20 19 18 37 37 H 1.08998 * 117.50477 * 252.48668 * 20 19 18 38 38 H 1.08994 * 115.55035 * 284.41636 * 21 10 9 39 39 H 1.08999 * 117.49739 * 0.02562 * 22 21 10 40 40 H 1.08998 * 117.49269 * 145.02418 * 22 21 10 41 41 H 1.09000 * 117.50000 * 214.98249 * 23 21 10 42 42 H 1.09004 * 117.49695 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5718 0.1425 11 6 5.3897 -2.6878 -0.3229 12 6 5.7818 -4.1649 -0.3949 13 6 7.2281 -4.2857 -0.8791 14 1 7.8803 -3.4499 -0.6253 15 6 7.4691 -4.9892 -2.2162 16 6 7.8494 -5.6835 -0.9069 17 1 8.9103 -5.7676 -0.6711 18 6 6.9770 -6.8537 -0.4480 19 6 6.4437 -6.8174 0.9856 20 6 7.5576 -7.7960 0.6083 21 6 3.8705 -3.0361 1.5300 22 6 3.3870 -4.4707 1.7523 23 6 2.4580 -3.2933 2.0588 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.5914 0.8323 26 1 3.8745 -0.7747 -0.9383 27 1 6.0504 -2.1700 0.3725 28 1 5.4799 -2.2393 -1.3122 29 1 5.1211 -4.6827 -1.0903 30 1 5.6915 -4.6135 0.5944 31 1 8.2799 -4.6164 -2.8421 32 1 6.5972 -5.3656 -2.7511 33 1 6.3347 -7.2898 -1.2131 34 1 5.4505 -7.2298 1.1637 35 1 6.7146 -5.9602 1.6019 36 1 8.5611 -7.5824 0.9762 37 1 7.2974 -8.8522 0.5385 38 1 4.6053 -2.6385 2.2299 39 1 3.1662 -5.0699 0.8690 40 1 3.8035 -5.0166 2.5988 41 1 2.2636 -3.0652 3.1068 42 1 1.6257 -3.1183 1.3770 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714823450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:51 Heat of formation + Delta-G solvation = 76.833104 kcal Electronic energy + Delta-G solvation = -18537.022960 eV Core-core repulsion = 15905.477779 eV Total energy + Delta-G solvation = -2631.545181 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07441 -37.65176 -35.40185 -33.64390 -32.49238 -30.08309 -26.81428 -23.77113 -22.96202 -22.21950 -21.90048 -21.48786 -20.94762 -19.40087 -19.03500 -16.80492 -15.69010 -15.51238 -14.99604 -14.87254 -14.42614 -13.99864 -13.73632 -13.17665 -12.88339 -12.57851 -12.15218 -11.95026 -11.65993 -11.45242 -11.31180 -11.14020 -11.03807 -10.82433 -10.71098 -10.58761 -10.48325 -10.21479 -9.95674 -9.66735 -9.55554 -9.36837 -9.11090 -9.04856 -8.49878 -7.32997 -5.99906 -3.95288 3.30544 3.38070 3.40096 3.59173 3.95656 4.45734 4.48402 4.57071 4.67152 4.84215 4.90765 5.04786 5.10147 5.31389 5.31732 5.41591 5.52052 5.58275 5.68725 5.71206 5.78198 5.80979 5.83390 5.89056 6.07051 6.10076 6.13367 6.19381 6.20800 6.23252 6.26251 6.39705 6.57391 6.70918 6.77551 6.85638 7.01660 7.20526 7.70160 7.95980 8.16424 8.72901 9.10006 9.62382 11.12803 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.005215 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.150771 B = 5368.206674 C = 5970.967045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.086 0.914 9 C 0.162 3.838 10 N -0.501 5.501 11 C 0.060 3.940 12 C -0.083 4.083 13 C -0.139 4.139 14 H 0.098 0.902 15 C -0.173 4.173 16 C -0.126 4.126 17 H 0.099 0.901 18 C -0.118 4.118 19 C -0.169 4.169 20 C -0.184 4.184 21 C 0.022 3.978 22 C -0.181 4.181 23 C -0.154 4.154 24 H 0.262 0.738 25 H -0.008 1.008 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -11.714 0.910 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.104 0.896 9 C 0.036 3.964 10 N -0.225 5.225 11 C -0.068 4.068 12 C -0.120 4.120 13 C -0.158 4.158 14 H 0.117 0.883 15 C -0.210 4.210 16 C -0.144 4.144 17 H 0.117 0.883 18 C -0.136 4.136 19 C -0.206 4.206 20 C -0.221 4.221 21 C -0.087 4.087 22 C -0.219 4.219 23 C -0.191 4.191 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.537 -11.869 0.609 18.777 hybrid contribution 1.017 1.614 0.453 1.961 sum 15.554 -10.255 1.063 18.660 Atomic orbital electron populations 1.69887 1.06013 1.26637 1.51687 1.24888 0.94693 0.98624 0.95192 0.86937 0.80353 0.84416 0.78479 1.20311 1.21316 1.19371 1.21116 0.88679 0.94573 1.49247 0.89617 1.20198 0.97258 0.83923 0.95004 1.61716 1.17472 1.25584 1.17759 1.22057 0.89610 0.95735 0.99430 1.21215 0.91779 0.96852 1.02181 1.22448 0.98441 0.94565 1.00330 0.88345 1.23104 1.03186 1.04232 0.90484 1.21784 0.98185 0.92429 1.02002 0.88254 1.21637 1.01739 0.97835 0.92439 1.22965 0.98280 1.01438 0.97888 1.22978 0.98602 0.96337 1.04175 1.22035 0.98264 0.97900 0.90478 1.23007 1.05624 0.91219 1.02024 1.23175 0.95124 0.99790 1.00982 0.92805 0.99021 0.96196 0.96343 0.91528 0.91388 0.90536 0.89242 0.88653 0.87920 0.88733 0.88572 0.89170 0.89147 0.91631 0.88979 0.90364 0.90301 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 21.60 27.59 -169.99 -4.69 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.49 6.37 56.52 0.36 -6.13 16 7 C -0.50 -13.93 8.41 -34.44 -0.29 -14.22 16 8 H 0.09 2.58 6.04 -52.49 -0.32 2.27 16 9 C 0.16 3.95 3.87 -4.98 -0.02 3.93 16 10 N -0.50 -10.48 4.56 -228.08 -1.04 -11.52 16 11 C 0.06 1.04 4.90 -3.83 -0.02 1.02 16 12 C -0.08 -1.19 4.26 -26.73 -0.11 -1.30 16 13 C -0.14 -1.68 5.72 -90.62 -0.52 -2.20 16 14 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 15 C -0.17 -1.89 9.90 -26.73 -0.26 -2.15 16 16 C -0.13 -1.34 5.87 -90.63 -0.53 -1.87 16 17 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.12 -1.23 5.25 -90.62 -0.48 -1.71 16 19 C -0.17 -1.76 8.44 -26.73 -0.23 -1.98 16 20 C -0.18 -1.70 10.25 -26.74 -0.27 -1.97 16 21 C 0.02 0.43 4.19 -67.71 -0.28 0.15 16 22 C -0.18 -2.98 9.24 -26.69 -0.25 -3.23 16 23 C -0.15 -3.02 9.48 -26.69 -0.25 -3.27 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H -0.01 -0.20 6.63 -51.93 -0.34 -0.54 16 26 H 0.02 0.49 7.44 -51.93 -0.39 0.10 16 27 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 28 H 0.07 1.17 7.82 -51.93 -0.41 0.76 16 29 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16 30 H 0.08 1.08 4.05 -51.93 -0.21 0.87 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.06 7.31 -51.93 -0.38 0.69 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.12 2.84 5.51 -51.93 -0.29 2.56 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -29.19 328.57 -11.02 -40.21 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.40 Total: 3.13 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -3.61 Total: -26.98 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.27 Total: -38.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.69 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.19 -11.02 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.046 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds