Wall clock time and date at job start Mon Mar 30 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00460 * 2 1 4 4 H 1.48509 * 109.46842 * 270.00222 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99664 * 3 2 1 6 6 H 1.48491 * 109.47427 * 150.00133 * 3 2 1 7 7 C 1.37883 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00077 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99659 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.46941 * 174.12362 * 9 7 2 11 11 C 1.46904 * 111.00074 * 159.76476 * 10 9 7 12 12 C 1.52993 * 109.47497 * 190.00244 * 11 10 9 13 13 C 1.53002 * 109.47481 * 180.02562 * 12 11 10 14 14 H 1.09002 * 115.55563 * 29.30987 * 13 12 11 15 15 C 1.52998 * 117.49923 * 243.62380 * 13 12 11 16 16 C 1.52993 * 117.49893 * 175.00186 * 13 12 11 17 17 H 1.09007 * 117.49831 * 215.00149 * 16 13 12 18 18 C 1.52997 * 117.50420 * 359.97438 * 16 13 12 19 19 C 1.53000 * 117.49803 * 300.00450 * 18 16 13 20 20 C 1.52994 * 59.99991 * 252.50350 * 19 18 16 21 21 C 1.46896 * 111.00474 * 283.72153 * 10 9 7 22 22 C 1.53006 * 117.49772 * 138.74188 * 21 10 9 23 23 C 1.53001 * 117.49699 * 70.08463 * 21 10 9 24 24 H 0.97005 * 119.99982 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46857 * 54.13190 * 9 7 2 26 26 H 1.08997 * 109.47477 * 294.12821 * 9 7 2 27 27 H 1.09007 * 109.46814 * 70.00335 * 11 10 9 28 28 H 1.08996 * 109.47163 * 310.00547 * 11 10 9 29 29 H 1.09007 * 109.47015 * 60.00214 * 12 11 10 30 30 H 1.09006 * 109.47309 * 300.00381 * 12 11 10 31 31 H 1.09001 * 117.49896 * 145.01561 * 15 13 12 32 32 H 1.08998 * 117.49652 * 0.02562 * 15 13 12 33 33 H 1.09004 * 115.55890 * 85.68729 * 18 16 13 34 34 H 1.09004 * 117.49698 * 145.01637 * 19 18 16 35 35 H 1.08999 * 117.49818 * 359.97438 * 19 18 16 36 36 H 1.09001 * 117.49493 * 107.48497 * 20 19 18 37 37 H 1.08998 * 117.50477 * 252.48668 * 20 19 18 38 38 H 1.08994 * 115.55035 * 284.41636 * 21 10 9 39 39 H 1.08999 * 117.49739 * 0.02562 * 22 21 10 40 40 H 1.08998 * 117.49269 * 145.02418 * 22 21 10 41 41 H 1.09000 * 117.50000 * 214.98249 * 23 21 10 42 42 H 1.09004 * 117.49695 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5718 0.1425 11 6 5.3897 -2.6878 -0.3229 12 6 5.7818 -4.1649 -0.3949 13 6 7.2281 -4.2857 -0.8791 14 1 7.8803 -3.4499 -0.6253 15 6 7.4691 -4.9892 -2.2162 16 6 7.8494 -5.6835 -0.9069 17 1 8.9103 -5.7676 -0.6711 18 6 6.9770 -6.8537 -0.4480 19 6 6.4437 -6.8174 0.9856 20 6 7.5576 -7.7960 0.6083 21 6 3.8705 -3.0361 1.5300 22 6 3.3870 -4.4707 1.7523 23 6 2.4580 -3.2933 2.0588 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.5914 0.8323 26 1 3.8745 -0.7747 -0.9383 27 1 6.0504 -2.1700 0.3725 28 1 5.4799 -2.2393 -1.3122 29 1 5.1211 -4.6827 -1.0903 30 1 5.6915 -4.6135 0.5944 31 1 8.2799 -4.6164 -2.8421 32 1 6.5972 -5.3656 -2.7511 33 1 6.3347 -7.2898 -1.2131 34 1 5.4505 -7.2298 1.1637 35 1 6.7146 -5.9602 1.6019 36 1 8.5611 -7.5824 0.9762 37 1 7.2974 -8.8522 0.5385 38 1 4.6053 -2.6385 2.2299 39 1 3.1662 -5.0699 0.8690 40 1 3.8035 -5.0166 2.5988 41 1 2.2636 -3.0652 3.1068 42 1 1.6257 -3.1183 1.3770 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714823450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:51 Heat of formation + Delta-G solvation = 61.450976 kcal Electronic energy + Delta-G solvation = -18537.689979 eV Core-core repulsion = 15905.477779 eV Total energy + Delta-G solvation = -2632.212200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07582 -39.07583 -36.29230 -35.28642 -34.45957 -31.66224 -28.61816 -24.65037 -24.13549 -23.79725 -23.19600 -22.84408 -21.94451 -21.00789 -19.95819 -18.89105 -16.95759 -16.49795 -16.34722 -16.15517 -16.10088 -15.52171 -14.98081 -14.69084 -14.36723 -13.86914 -13.76359 -13.63197 -13.02330 -12.67511 -12.42527 -12.36178 -12.29582 -12.20322 -12.16556 -11.91740 -11.75628 -11.49579 -11.44271 -11.24212 -11.00899 -10.74156 -10.66865 -10.48289 -10.20366 -8.98366 -8.21952 -6.22235 1.34140 1.35318 1.45007 2.36721 2.75377 3.01633 3.10203 3.15338 3.22333 3.70794 3.91040 4.03565 4.17605 4.20764 4.24695 4.28474 4.32465 4.45665 4.50798 4.52039 4.65615 4.69185 4.83500 4.84087 4.87584 4.91808 4.95436 5.03701 5.11039 5.12410 5.17804 5.30882 5.33218 5.35056 5.38759 5.42615 5.52057 5.58244 5.63651 6.07082 6.52064 6.71264 6.84495 7.39445 8.93872 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.005215 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.150771 B = 5368.206674 C = 5970.967045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.497 4.497 8 H 0.050 0.950 9 C 0.171 3.829 10 N -0.518 5.518 11 C 0.060 3.940 12 C -0.068 4.068 13 C -0.151 4.151 14 H 0.104 0.896 15 C -0.173 4.173 16 C -0.113 4.113 17 H 0.113 0.887 18 C -0.131 4.131 19 C -0.177 4.177 20 C -0.170 4.170 21 C 0.011 3.989 22 C -0.140 4.140 23 C -0.177 4.177 24 H 0.264 0.736 25 H -0.012 1.012 26 H 0.021 0.979 27 H 0.026 0.974 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.804 -12.319 1.394 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.188 4.188 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.044 3.956 10 N -0.242 5.242 11 C -0.068 4.068 12 C -0.106 4.106 13 C -0.169 4.169 14 H 0.122 0.878 15 C -0.209 4.209 16 C -0.131 4.131 17 H 0.131 0.869 18 C -0.149 4.149 19 C -0.214 4.214 20 C -0.207 4.207 21 C -0.098 4.098 22 C -0.177 4.177 23 C -0.214 4.214 24 H 0.073 0.927 25 H 0.006 0.994 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.370 -12.496 1.090 21.426 hybrid contribution 0.098 1.692 0.294 1.720 sum 17.467 -10.804 1.384 20.585 Atomic orbital electron populations 1.70040 1.07878 1.27688 1.53467 1.25735 0.95476 1.02581 0.95024 0.85856 0.79343 0.79557 0.79001 1.19319 1.20968 1.17955 1.21328 0.90736 0.93314 1.48183 0.93211 1.19957 0.94774 0.86191 0.94673 1.61631 1.19976 1.23295 1.19253 1.22143 0.87600 0.97966 0.99044 1.21035 0.93087 0.94321 1.02136 1.22343 0.97042 0.95922 1.01639 0.87802 1.23159 1.03413 1.03895 0.90471 1.21841 0.98727 0.91328 1.01193 0.86904 1.21676 1.02251 0.98456 0.92521 1.22961 0.98840 1.01915 0.97677 1.23048 0.98579 0.96569 1.02460 1.22168 0.97758 1.00088 0.89768 1.23011 1.02211 0.89778 1.02744 1.23014 0.94345 1.03366 1.00705 0.92718 0.99447 0.96093 0.95557 0.92056 0.92902 0.90162 0.87832 0.89356 0.88384 0.88815 0.89049 0.88282 0.88135 0.90439 0.89409 0.86652 0.89039 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 2 C 0.01 0.49 5.47 84.66 0.46 0.96 16 3 Si 0.94 44.76 27.59 68.60 1.89 46.65 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.26 -11.54 6.37 99.48 0.63 -10.90 16 7 C -0.50 -28.67 8.41 25.60 0.22 -28.46 16 8 H 0.05 3.18 6.04 -2.91 -0.02 3.16 16 9 C 0.17 8.34 3.87 85.56 0.33 8.67 16 10 N -0.52 -21.52 4.56 -875.52 -4.00 -25.52 16 11 C 0.06 2.02 4.90 86.30 0.42 2.44 16 12 C -0.07 -1.86 4.26 30.59 0.13 -1.73 16 13 C -0.15 -3.32 5.72 -10.80 -0.06 -3.38 16 14 H 0.10 2.20 8.07 -2.39 -0.02 2.18 16 15 C -0.17 -3.41 9.90 30.59 0.30 -3.11 16 16 C -0.11 -2.11 5.87 -10.80 -0.06 -2.17 16 17 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 18 C -0.13 -2.44 5.25 -10.80 -0.06 -2.49 16 19 C -0.18 -3.27 8.44 30.59 0.26 -3.01 16 20 C -0.17 -2.64 10.25 30.59 0.31 -2.33 16 21 C 0.01 0.41 4.19 44.92 0.19 0.60 16 22 C -0.14 -4.39 9.24 30.62 0.28 -4.10 16 23 C -0.18 -7.03 9.48 30.62 0.29 -6.74 16 24 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 25 H -0.01 -0.60 6.63 -2.38 -0.02 -0.62 16 26 H 0.02 1.02 7.44 -2.39 -0.02 1.00 16 27 H 0.03 0.84 8.12 -2.38 -0.02 0.82 16 28 H 0.06 2.09 7.82 -2.39 -0.02 2.07 16 29 H 0.05 1.59 7.88 -2.38 -0.02 1.57 16 30 H 0.08 2.10 4.05 -2.38 -0.01 2.09 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.09 1.78 7.31 -2.39 -0.02 1.77 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 3.86 5.51 -2.39 -0.01 3.85 16 Total: -1.00 -64.23 328.57 2.11 -62.12 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.90 Total: 20.91 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.02 Total: -44.85 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.70 Total: -84.84 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.89 Total: 46.65 kcal Total: -64.23 2.11 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714823450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.575 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds