Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.53003 * 109.47339 * 120.00322 * 2 1 3 5 5 H 1.08998 * 109.46629 * 300.00107 * 4 2 1 6 6 C 1.52996 * 109.47138 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.46974 * 60.00280 * 4 2 1 8 8 N 1.40118 * 126.49590 * 60.02187 * 7 4 2 9 9 N 1.28678 * 108.93674 * 179.97438 * 8 7 4 10 10 C 1.34843 * 109.63224 * 0.02562 * 9 8 7 11 11 C 1.41488 * 126.01566 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99833 * 186.15107 * 11 10 9 13 13 C 1.39732 * 120.00408 * 6.14936 * 11 10 9 14 14 N 1.30981 * 120.00169 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00196 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47418 * 59.99645 * 15 13 11 17 17 H 1.48498 * 109.47349 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46925 * 299.99715 * 15 13 11 19 19 C 1.35024 * 126.48886 * 239.98614 * 7 4 2 20 20 C 1.50700 * 126.77369 * 0.02562 * 19 7 4 21 21 C 1.52999 * 117.50046 * 311.92417 * 20 19 7 22 22 C 1.52996 * 117.50139 * 243.26443 * 20 19 7 23 23 H 1.08998 * 109.46875 * 299.99767 * 1 2 3 24 24 H 1.08994 * 109.46992 * 59.99787 * 1 2 3 25 25 H 1.09006 * 109.46825 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47096 * 240.00708 * 2 1 3 27 27 H 1.09001 * 109.46564 * 60.00382 * 3 2 1 28 28 H 1.08997 * 109.47179 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47181 * 300.00266 * 3 2 1 30 30 H 1.09001 * 109.47214 * 300.00335 * 6 4 2 31 31 H 1.09000 * 109.47133 * 59.99574 * 6 4 2 32 32 H 1.09001 * 109.47115 * 179.97438 * 6 4 2 33 33 H 0.96998 * 120.00405 * 179.97438 * 14 13 11 34 34 H 1.08997 * 115.55039 * 97.58728 * 20 19 7 35 35 H 1.09001 * 117.49571 * 359.97438 * 21 20 19 36 36 H 1.08994 * 117.50039 * 145.01598 * 21 20 19 37 37 H 1.09001 * 117.50243 * 214.98290 * 22 20 19 38 38 H 1.09001 * 117.49940 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2488 7 7 1.5518 -2.1025 1.2491 8 7 1.8054 -3.0760 0.2737 9 7 1.2139 -4.1681 0.6100 10 6 0.5618 -3.9895 1.7767 11 6 -0.2013 -4.9648 2.4611 12 1 -0.7657 -4.6898 3.3399 13 6 -0.2247 -6.2836 2.0001 14 7 0.4602 -6.6173 0.9346 15 14 -1.2328 -7.5710 2.9033 16 1 -2.6618 -7.1672 2.9080 17 1 -1.0913 -8.8809 2.2181 18 1 -0.7471 -7.6884 4.3018 19 6 0.7727 -2.6788 2.1893 20 6 0.2369 -2.0292 3.4391 21 6 1.2225 -1.2406 4.3036 22 6 0.6978 -2.5961 4.7833 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.6767 1.9562 0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 3.9330 -1.2358 0.3588 31 1 3.9338 0.3057 1.2486 32 1 3.9334 -1.2353 2.1390 33 1 0.4442 -7.5329 0.6148 34 1 -0.7853 -1.6565 3.3739 35 1 2.2586 -1.1919 3.9686 36 1 0.8486 -0.3493 4.8075 37 1 -0.0210 -2.5963 5.6026 38 1 1.3884 -3.4393 4.7637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = 97.056024 kcal Electronic energy + Delta-G solvation = -18971.544641 eV Core-core repulsion = 16237.336048 eV Total energy + Delta-G solvation = -2734.208593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14082 -36.87048 -36.29288 -33.28585 -31.68291 -29.55855 -28.98121 -26.82763 -25.06690 -23.57819 -22.32980 -22.02498 -20.72537 -19.23626 -18.70007 -16.88213 -15.76143 -15.04740 -14.74139 -14.59577 -14.24806 -13.67908 -13.40284 -13.10352 -12.68716 -12.27382 -12.09618 -11.95296 -11.69662 -11.48842 -11.16117 -11.08782 -11.02505 -10.79558 -10.69988 -10.62939 -10.47592 -10.18319 -9.98793 -9.75495 -9.56276 -9.19071 -8.70329 -8.31386 -7.30708 -6.29851 -4.07968 2.89996 3.22088 3.24017 3.25808 3.63598 4.18930 4.36899 4.39668 4.82822 5.07731 5.22242 5.30057 5.40142 5.46933 5.52274 5.59274 5.62406 5.70612 5.79055 5.88754 5.95295 5.98584 6.02714 6.06719 6.18939 6.24695 6.36637 6.42542 6.54813 6.56929 6.60982 6.77128 7.02636 7.24549 7.48900 7.59910 8.26751 8.53116 8.91566 9.17353 10.30893 10.67351 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.007292 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.455221 B = 3839.012696 C = 4327.559105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.145 4.145 4 C 0.166 3.834 5 H 0.092 0.908 6 C -0.160 4.160 7 N -0.362 5.362 8 N -0.129 5.129 9 N -0.233 5.233 10 C 0.159 3.841 11 C -0.447 4.447 12 H 0.080 0.920 13 C 0.073 3.927 14 N -0.779 5.779 15 Si 0.904 3.096 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.090 4.090 20 C -0.040 4.040 21 C -0.195 4.195 22 C -0.156 4.156 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.271 0.729 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 12.365 3.623 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.062 3.938 5 H 0.110 0.890 6 C -0.218 4.218 7 N -0.158 5.158 8 N -0.105 5.105 9 N -0.105 5.105 10 C 0.029 3.971 11 C -0.483 4.483 12 H 0.098 0.902 13 C -0.145 4.145 14 N -0.406 5.406 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.221 4.221 20 C -0.061 4.061 21 C -0.232 4.232 22 C -0.193 4.193 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.140 11.861 2.091 12.232 hybrid contribution -0.960 -0.344 1.376 1.712 sum 1.180 11.516 3.466 12.084 Atomic orbital electron populations 1.21758 0.94822 1.02608 1.00806 1.21430 0.96515 0.95662 0.98600 1.21881 1.01082 0.95585 1.01715 1.21080 0.94258 0.79625 0.98852 0.89001 1.22167 0.94695 1.01770 1.03174 1.49486 1.38338 1.09650 1.18318 1.81440 1.23930 0.92893 1.12261 1.75117 1.09490 1.12994 1.12880 1.18908 0.97314 0.89990 0.90903 1.18479 1.26892 0.91618 1.11294 0.90186 1.25767 0.94942 0.99265 0.94565 1.70005 1.32763 1.18883 1.18943 0.86460 0.80728 0.79750 0.80100 1.19410 1.20731 1.19400 1.20477 1.09577 0.95849 0.96196 1.19769 0.96833 1.01500 0.87977 1.23001 0.99381 0.95484 1.05381 1.22834 1.03431 0.96296 0.96788 0.93099 0.93109 0.91971 0.90132 0.92733 0.92293 0.92555 0.91373 0.91452 0.92535 0.91855 0.88340 0.89516 0.89439 0.89230 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.04 37.16 0.34 -1.86 16 2 C -0.10 -1.51 2.64 -90.62 -0.24 -1.75 16 3 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 4 C 0.17 2.73 2.25 -67.93 -0.15 2.58 16 5 H 0.09 1.40 5.85 -51.93 -0.30 1.09 16 6 C -0.16 -2.36 9.11 37.16 0.34 -2.02 16 7 N -0.36 -7.87 2.52 -49.74 -0.13 -7.99 16 8 N -0.13 -3.36 13.62 60.35 0.82 -2.54 16 9 N -0.23 -6.81 10.58 32.05 0.34 -6.47 16 10 C 0.16 4.40 6.71 -85.02 -0.57 3.83 16 11 C -0.45 -12.26 9.16 -37.79 -0.35 -12.61 16 12 H 0.08 2.06 7.74 -52.48 -0.41 1.65 16 13 C 0.07 1.97 5.49 -17.36 -0.10 1.88 16 14 N -0.78 -22.41 11.94 55.54 0.66 -21.75 16 15 Si 0.90 19.92 29.56 -169.99 -5.02 14.89 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.09 -2.08 6.55 -80.90 -0.53 -2.61 16 20 C -0.04 -0.75 5.55 -91.77 -0.51 -1.26 16 21 C -0.20 -2.96 8.64 -26.70 -0.23 -3.19 16 22 C -0.16 -2.64 10.24 -26.70 -0.27 -2.91 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.20 7.61 -51.93 -0.39 0.80 16 26 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 34 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.09 1.36 7.56 -51.93 -0.39 0.97 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -31.13 313.22 -6.50 -37.63 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.95 Total: 2.69 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.94 Total: -21.19 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.70 Total: -38.75 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.13 -6.50 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.689 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds