Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 H 1.08996 * 109.47228 * 305.00744 * 3 2 1 5 5 C 1.53008 * 109.46815 * 65.00028 * 3 2 1 6 6 N 1.46501 * 109.47283 * 184.99747 * 3 2 1 7 7 N 1.40122 * 126.49215 * 300.00583 * 6 3 2 8 8 N 1.28673 * 108.92819 * 179.72080 * 7 6 3 9 9 C 1.34842 * 109.63963 * 0.44890 * 8 7 6 10 10 C 1.41482 * 126.02074 * 179.81393 * 9 8 7 11 11 H 1.08010 * 119.99796 * 188.16129 * 10 9 8 12 12 C 1.39742 * 120.00508 * 7.88521 * 10 9 8 13 13 N 1.30989 * 119.99357 * 0.27603 * 12 10 9 14 14 Si 1.86802 * 120.00275 * 180.27574 * 12 10 9 15 15 H 1.48496 * 109.46867 * 90.00136 * 14 12 10 16 16 H 1.48498 * 109.46746 * 210.00224 * 14 12 10 17 17 H 1.48492 * 109.46976 * 329.99966 * 14 12 10 18 18 C 1.35017 * 126.48512 * 120.00413 * 6 3 2 19 19 C 1.50695 * 126.77697 * 0.03606 * 18 6 3 20 20 C 1.53781 * 113.61257 * 223.82820 * 19 18 6 21 21 C 1.53781 * 87.08274 * 220.01906 * 20 19 18 22 22 C 1.53785 * 87.08059 * 25.43497 * 21 20 19 23 23 H 1.08999 * 109.47163 * 59.99280 * 1 2 3 24 24 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47081 * 299.99588 * 1 2 3 26 26 H 1.09000 * 109.47081 * 240.00412 * 2 1 3 27 27 H 1.08998 * 109.47179 * 120.00163 * 2 1 3 28 28 H 1.08994 * 109.47359 * 300.00311 * 5 3 2 29 29 H 1.09003 * 109.46992 * 59.99785 * 5 3 2 30 30 H 1.08993 * 109.47285 * 180.02562 * 5 3 2 31 31 H 0.96994 * 119.99320 * 180.02562 * 13 12 10 32 32 H 1.08996 * 112.84949 * 355.13357 * 19 18 6 33 33 H 1.09000 * 113.61545 * 334.56830 * 20 19 18 34 34 H 1.09002 * 113.61040 * 105.47351 * 20 19 18 35 35 H 1.09003 * 113.61275 * 270.89005 * 21 20 19 36 36 H 1.08992 * 113.69023 * 139.99473 * 21 20 19 37 37 H 1.08997 * 113.61323 * 220.02491 * 22 21 20 38 38 H 1.08999 * 113.69216 * 89.12429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.4100 0.8538 0.7667 8 7 5.6050 1.0541 0.3335 9 6 5.5589 1.7666 -0.8104 10 6 6.6729 2.1827 -1.5768 11 1 6.5350 2.8612 -2.4058 12 6 7.9526 1.7206 -1.2578 13 7 8.1198 0.8978 -0.2524 14 14 9.4244 2.2761 -2.2651 15 1 9.9929 3.5123 -1.6704 16 1 10.4555 1.2075 -2.2656 17 1 8.9947 2.5500 -3.6598 18 6 4.2236 2.0151 -1.1070 19 6 3.6894 2.7729 -2.2950 20 6 4.3789 2.4068 -3.6199 21 6 4.3273 3.9035 -3.9694 22 6 4.2992 4.1754 -2.4560 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.5490 2.1252 1.3971 29 1 2.0698 1.5874 2.1492 30 1 1.9981 3.1542 1.3073 31 1 9.0081 0.5773 -0.0307 32 1 2.6008 2.7610 -2.3499 33 1 5.3910 2.0225 -3.4938 34 1 3.7670 1.7847 -4.2731 35 1 3.4132 4.2006 -4.4834 36 1 5.2281 4.2695 -4.4620 37 1 3.6230 4.9809 -2.1696 38 1 5.2889 4.2750 -2.0104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 93.025963 kcal Electronic energy + Delta-G solvation = -18916.146457 eV Core-core repulsion = 16181.763108 eV Total energy + Delta-G solvation = -2734.383350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17905 -37.68691 -36.14378 -33.21418 -31.29539 -29.49818 -28.58701 -25.91894 -24.87770 -24.36548 -23.99233 -21.63798 -20.05085 -19.13337 -18.32612 -17.02341 -15.71736 -14.85822 -14.71562 -14.61097 -14.30756 -14.01053 -13.28238 -13.10084 -12.44651 -12.18793 -11.99816 -11.69895 -11.64703 -11.58126 -11.45861 -11.30356 -11.10574 -10.94680 -10.73966 -10.60906 -10.26431 -9.91172 -9.79748 -9.63485 -9.45907 -9.19794 -8.74151 -8.31079 -7.27015 -6.31410 -4.09426 2.89061 3.19128 3.23331 3.25367 3.65868 4.17089 4.37727 4.89774 5.11061 5.25446 5.33266 5.35563 5.43285 5.44260 5.53247 5.54098 5.65413 5.80966 5.83472 5.99689 6.04076 6.06413 6.11679 6.17627 6.31135 6.43125 6.44732 6.48781 6.49832 6.79555 6.83243 6.92808 7.24243 7.29587 7.51986 7.63622 8.26086 8.48605 8.91000 9.15261 10.30850 10.66065 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023105 B = 0.007989 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.547254 B = 3503.992222 C = 4327.475985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.086 0.914 5 C -0.157 4.157 6 N -0.372 5.372 7 N -0.134 5.134 8 N -0.233 5.233 9 C 0.156 3.844 10 C -0.454 4.454 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.778 5.778 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.264 1.264 18 C -0.099 4.099 19 C -0.010 4.010 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.132 4.132 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.270 0.730 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 3.119 -4.008 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.059 3.941 4 H 0.104 0.896 5 C -0.216 4.216 6 N -0.168 5.168 7 N -0.109 5.109 8 N -0.104 5.104 9 C 0.026 3.974 10 C -0.490 4.490 11 H 0.107 0.893 12 C -0.145 4.145 13 N -0.405 5.405 14 Si 0.725 3.275 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.230 4.230 19 C -0.031 4.031 20 C -0.175 4.175 21 C -0.182 4.182 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.668 2.143 -2.523 11.170 hybrid contribution 0.426 0.782 -1.334 1.604 sum -10.242 2.925 -3.857 11.328 Atomic orbital electron populations 1.21792 0.95306 1.01763 1.01771 1.21835 0.95481 0.96076 1.03451 1.20966 0.77494 0.96761 0.98831 0.89636 1.22135 1.00863 1.00997 0.97560 1.49615 1.05465 1.41985 1.19688 1.81439 0.93489 1.20731 1.15240 1.75084 1.09822 1.14645 1.10840 1.18895 0.90263 0.96329 0.91953 1.18665 0.89292 1.27285 1.13777 0.89338 1.25783 0.99896 0.94077 0.94760 1.70018 1.23281 1.24171 1.23017 0.86454 0.81336 0.78840 0.80830 1.19877 1.20625 1.18864 1.21388 0.92381 1.12654 0.96589 1.20420 0.96914 0.94596 0.91147 1.23169 1.03753 0.95294 0.95274 1.22778 1.00822 0.97808 0.96750 1.23047 1.02656 0.95720 0.95565 0.92805 0.92546 0.92332 0.91681 0.90747 0.91552 0.91360 0.92461 0.91919 0.91082 0.86880 0.93061 0.91461 0.91817 0.93009 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.25 16 2 C -0.13 -1.93 5.67 -26.73 -0.15 -2.09 16 3 C 0.16 2.72 3.16 -67.93 -0.21 2.51 16 4 H 0.09 1.28 6.54 -51.93 -0.34 0.94 16 5 C -0.16 -2.31 9.22 37.16 0.34 -1.97 16 6 N -0.37 -8.27 3.29 -49.73 -0.16 -8.44 16 7 N -0.13 -3.51 13.62 60.35 0.82 -2.69 16 8 N -0.23 -6.80 10.60 32.05 0.34 -6.46 16 9 C 0.16 4.26 6.53 -85.02 -0.56 3.70 16 10 C -0.45 -12.04 7.10 -37.78 -0.27 -12.31 16 11 H 0.09 2.15 4.63 -52.48 -0.24 1.91 16 12 C 0.07 1.95 5.49 -17.35 -0.10 1.85 16 13 N -0.78 -22.17 11.95 55.54 0.66 -21.50 16 14 Si 0.90 19.56 29.56 -169.99 -5.02 14.53 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 C -0.10 -2.30 6.34 -80.90 -0.51 -2.81 16 19 C -0.01 -0.19 4.01 -90.96 -0.36 -0.55 16 20 C -0.14 -2.45 7.18 -25.92 -0.19 -2.63 16 21 C -0.14 -2.21 8.08 -25.92 -0.21 -2.42 16 22 C -0.13 -2.30 7.19 -25.91 -0.19 -2.48 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.58 6.57 -51.93 -0.34 0.23 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 7.11 8.30 -40.82 -0.34 6.77 16 32 H 0.07 1.18 6.73 -51.93 -0.35 0.83 16 33 H 0.11 2.35 5.25 -51.93 -0.27 2.07 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 2.00 6.11 -51.93 -0.32 1.68 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -30.92 302.09 -6.42 -37.34 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.57 Total: 3.12 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.04 Total: -20.46 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 1.66 Total: -39.09 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.92 -6.42 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.369 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds