Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 H 1.08996 * 109.47228 * 305.00744 * 3 2 1 5 5 C 1.53008 * 109.46815 * 65.00028 * 3 2 1 6 6 N 1.46501 * 109.47283 * 184.99747 * 3 2 1 7 7 N 1.40122 * 126.49215 * 300.00583 * 6 3 2 8 8 N 1.28673 * 108.92819 * 179.72080 * 7 6 3 9 9 C 1.34842 * 109.63963 * 0.44890 * 8 7 6 10 10 C 1.41482 * 126.02074 * 179.81393 * 9 8 7 11 11 H 1.08010 * 119.99796 * 188.16129 * 10 9 8 12 12 C 1.39742 * 120.00508 * 7.88521 * 10 9 8 13 13 N 1.30989 * 119.99357 * 0.27603 * 12 10 9 14 14 Si 1.86802 * 120.00275 * 180.27574 * 12 10 9 15 15 H 1.48496 * 109.46867 * 90.00136 * 14 12 10 16 16 H 1.48498 * 109.46746 * 210.00224 * 14 12 10 17 17 H 1.48492 * 109.46976 * 329.99966 * 14 12 10 18 18 C 1.35017 * 126.48512 * 120.00413 * 6 3 2 19 19 C 1.50695 * 126.77697 * 0.03606 * 18 6 3 20 20 C 1.53781 * 113.61257 * 223.82820 * 19 18 6 21 21 C 1.53781 * 87.08274 * 220.01906 * 20 19 18 22 22 C 1.53785 * 87.08059 * 25.43497 * 21 20 19 23 23 H 1.08999 * 109.47163 * 59.99280 * 1 2 3 24 24 H 1.08997 * 109.47562 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47081 * 299.99588 * 1 2 3 26 26 H 1.09000 * 109.47081 * 240.00412 * 2 1 3 27 27 H 1.08998 * 109.47179 * 120.00163 * 2 1 3 28 28 H 1.08994 * 109.47359 * 300.00311 * 5 3 2 29 29 H 1.09003 * 109.46992 * 59.99785 * 5 3 2 30 30 H 1.08993 * 109.47285 * 180.02562 * 5 3 2 31 31 H 0.96994 * 119.99320 * 180.02562 * 13 12 10 32 32 H 1.08996 * 112.84949 * 355.13357 * 19 18 6 33 33 H 1.09000 * 113.61545 * 334.56830 * 20 19 18 34 34 H 1.09002 * 113.61040 * 105.47351 * 20 19 18 35 35 H 1.09003 * 113.61275 * 270.89005 * 21 20 19 36 36 H 1.08992 * 113.69023 * 139.99473 * 21 20 19 37 37 H 1.08997 * 113.61323 * 220.02491 * 22 21 20 38 38 H 1.08999 * 113.69216 * 89.12429 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.4100 0.8538 0.7667 8 7 5.6050 1.0541 0.3335 9 6 5.5589 1.7666 -0.8104 10 6 6.6729 2.1827 -1.5768 11 1 6.5350 2.8612 -2.4058 12 6 7.9526 1.7206 -1.2578 13 7 8.1198 0.8978 -0.2524 14 14 9.4244 2.2761 -2.2651 15 1 9.9929 3.5123 -1.6704 16 1 10.4555 1.2075 -2.2656 17 1 8.9947 2.5500 -3.6598 18 6 4.2236 2.0151 -1.1070 19 6 3.6894 2.7729 -2.2950 20 6 4.3789 2.4068 -3.6199 21 6 4.3273 3.9035 -3.9694 22 6 4.2992 4.1754 -2.4560 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.5490 2.1252 1.3971 29 1 2.0698 1.5874 2.1492 30 1 1.9981 3.1542 1.3073 31 1 9.0081 0.5773 -0.0307 32 1 2.6008 2.7610 -2.3499 33 1 5.3910 2.0225 -3.4938 34 1 3.7670 1.7847 -4.2731 35 1 3.4132 4.2006 -4.4834 36 1 5.2281 4.2695 -4.4620 37 1 3.6230 4.9809 -2.1696 38 1 5.2889 4.2750 -2.0104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = 73.816345 kcal Electronic energy + Delta-G solvation = -18916.979449 eV Core-core repulsion = 16181.763108 eV Total energy + Delta-G solvation = -2735.216341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01203 -39.14870 -37.55782 -35.11270 -32.89325 -31.27689 -29.99070 -27.63539 -26.27177 -25.73191 -25.62771 -23.19686 -21.71583 -20.76010 -19.86597 -18.77913 -17.32432 -16.68202 -16.08363 -15.94277 -15.88895 -15.58659 -14.81377 -14.54634 -13.76065 -13.57062 -13.30017 -13.16750 -13.13571 -12.97374 -12.92046 -12.81497 -12.65343 -12.49217 -12.16470 -11.96625 -11.71021 -11.59474 -11.18721 -11.16334 -11.09947 -11.04345 -10.61336 -10.12874 -9.22407 -8.25503 -6.10534 1.06198 1.43827 1.44977 1.57174 2.03729 2.35027 2.39276 3.56475 3.61581 3.88033 3.91233 3.98701 4.04240 4.11334 4.28685 4.33744 4.38557 4.51272 4.60764 4.70698 4.80878 4.89193 4.97691 5.04856 5.06502 5.10003 5.11582 5.18186 5.28145 5.31157 5.34478 5.41130 5.48576 5.61430 5.70257 5.94577 6.47912 6.54450 6.98192 7.16331 8.37248 8.74939 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023105 B = 0.007989 C = 0.006469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.547254 B = 3503.992222 C = 4327.475985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.146 3.854 4 H 0.115 0.885 5 C -0.150 4.150 6 N -0.357 5.357 7 N -0.174 5.174 8 N -0.291 5.291 9 C 0.112 3.888 10 C -0.470 4.470 11 H 0.104 0.896 12 C 0.018 3.982 13 N -0.833 5.833 14 Si 0.976 3.024 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.247 1.247 18 C -0.071 4.071 19 C -0.020 4.020 20 C -0.142 4.142 21 C -0.121 4.121 22 C -0.132 4.132 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.269 0.731 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 4.950 -6.418 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.044 3.956 4 H 0.133 0.867 5 C -0.208 4.208 6 N -0.151 5.151 7 N -0.148 5.148 8 N -0.159 5.159 9 C -0.022 4.022 10 C -0.507 4.507 11 H 0.122 0.878 12 C -0.195 4.195 13 N -0.462 5.462 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.170 1.170 18 C -0.207 4.207 19 C -0.040 4.040 20 C -0.180 4.180 21 C -0.158 4.158 22 C -0.170 4.170 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.614 3.956 -4.894 14.998 hybrid contribution 1.059 0.237 -0.607 1.243 sum -12.555 4.193 -5.501 14.335 Atomic orbital electron populations 1.21752 0.91347 1.03127 1.03425 1.21779 0.98716 0.94257 1.01512 1.21636 0.74131 0.98678 1.01123 0.86735 1.22101 1.03588 0.99667 0.95416 1.50163 1.07586 1.39218 1.18096 1.81310 0.93577 1.23151 1.16804 1.75033 1.11433 1.16884 1.12583 1.19496 0.92486 0.97742 0.92431 1.19054 0.89711 1.27668 1.14244 0.87829 1.26761 1.03073 0.93924 0.95756 1.70204 1.23704 1.26658 1.25650 0.85297 0.77123 0.78091 0.79724 1.19453 1.20726 1.17045 1.22249 0.91624 1.09846 0.96948 1.20842 0.98873 0.94975 0.89322 1.23095 1.01989 0.97785 0.95124 1.22732 1.02929 0.94955 0.95221 1.22960 1.01295 0.95350 0.97440 0.90936 0.91498 0.90765 0.93509 0.92984 0.87014 0.93529 0.93257 0.92178 0.87657 0.90375 0.91019 0.87803 0.91266 0.90477 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.67 71.98 0.70 -1.79 16 2 C -0.12 -3.51 5.67 30.59 0.17 -3.34 16 3 C 0.15 4.55 3.16 44.99 0.14 4.69 16 4 H 0.11 2.94 6.54 -2.39 -0.02 2.92 16 5 C -0.15 -4.09 9.22 71.98 0.66 -3.42 16 6 N -0.36 -15.93 3.29 -311.26 -1.02 -16.96 16 7 N -0.17 -9.60 13.62 37.02 0.50 -9.10 16 8 N -0.29 -18.06 10.60 -52.52 -0.56 -18.61 16 9 C 0.11 6.35 6.53 39.67 0.26 6.60 16 10 C -0.47 -25.84 7.10 23.43 0.17 -25.68 16 11 H 0.10 5.14 4.63 -2.91 -0.01 5.12 16 12 C 0.02 0.97 5.49 85.18 0.47 1.44 16 13 N -0.83 -50.44 11.95 21.80 0.26 -50.18 16 14 Si 0.98 41.45 29.56 68.60 2.03 43.48 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 18 C -0.07 -3.32 6.34 42.26 0.27 -3.05 16 19 C -0.02 -0.68 4.01 -11.01 -0.04 -0.72 16 20 C -0.14 -4.69 7.18 31.12 0.22 -4.47 16 21 C -0.12 -3.19 8.08 31.12 0.25 -2.94 16 22 C -0.13 -4.23 7.19 31.12 0.22 -4.00 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.12 6.57 -2.39 -0.02 1.10 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 2.04 6.56 -2.39 -0.02 2.02 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.27 15.11 8.30 -92.71 -0.77 14.34 16 32 H 0.11 2.96 6.73 -2.39 -0.02 2.94 16 33 H 0.08 3.20 5.25 -2.39 -0.01 3.19 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 2.62 6.11 -2.39 -0.01 2.61 16 Total: -1.00 -74.07 302.09 5.76 -68.31 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.05 Total: 19.73 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 3.49 Total: -36.68 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -0.82 Total: -94.85 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -74.07 5.76 -68.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.129 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds