Wall clock time and date at job start Mon Mar 30 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48497 * 109.46942 * 269.99932 * 3 2 1 5 5 H 1.48498 * 109.46813 * 29.99824 * 3 2 1 6 6 H 1.48492 * 109.46966 * 149.99845 * 3 2 1 7 7 C 1.37879 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00331 * 0.02562 * 7 2 1 10 10 C 1.54752 * 109.71023 * 120.09309 * 9 7 2 11 11 C 1.53704 * 108.25059 * 65.69837 * 10 9 7 12 12 H 1.09000 * 112.12414 * 188.25511 * 11 10 9 13 13 C 1.54609 * 108.35591 * 312.65589 * 11 10 9 14 14 C 1.54290 * 104.83834 * 88.78798 * 13 11 10 15 15 C 1.54608 * 104.84246 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.72872 * 147.14173 * 15 14 13 17 17 C 1.53135 * 109.42891 * 240.22575 * 9 7 2 18 18 N 1.48715 * 104.22527 * 25.17676 * 15 14 13 19 19 C 1.46890 * 111.00036 * 77.51305 * 18 15 14 20 20 C 1.54269 * 110.03398 * 183.57077 * 19 18 15 21 21 C 1.54966 * 104.15982 * 217.13831 * 20 19 18 22 22 C 1.54887 * 102.77847 * 37.88768 * 21 20 19 23 23 C 1.53883 * 110.03320 * 66.35593 * 19 18 15 24 24 H 0.96999 * 119.99466 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.38232 * 0.09347 * 9 7 2 26 26 H 1.09000 * 109.43926 * 306.32985 * 10 9 7 27 27 H 1.09003 * 110.32308 * 185.58173 * 10 9 7 28 28 H 1.08999 * 110.36364 * 207.62611 * 13 11 10 29 29 H 1.08996 * 110.36688 * 329.84025 * 13 11 10 30 30 H 1.08996 * 110.36698 * 241.16585 * 14 13 11 31 31 H 1.09002 * 110.36860 * 118.84442 * 14 13 11 32 32 H 1.08999 * 109.56944 * 174.11351 * 17 9 7 33 33 H 1.09000 * 109.56813 * 53.87491 * 17 9 7 34 34 H 1.08998 * 110.01891 * 304.95961 * 19 18 15 35 35 H 1.09000 * 110.48310 * 335.78348 * 20 19 18 36 36 H 1.08994 * 110.48808 * 98.42538 * 20 19 18 37 37 H 1.08997 * 110.71716 * 279.56673 * 21 20 19 38 38 H 1.09003 * 110.92016 * 156.29744 * 21 20 19 39 39 H 1.09000 * 110.48205 * 203.40265 * 22 21 20 40 40 H 1.09001 * 110.48683 * 80.76578 * 22 21 20 41 41 H 1.09004 * 110.03036 * 238.56815 * 23 19 18 42 42 H 1.09001 * 110.02773 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 1.6231 -3.3167 -1.2596 11 6 3.1062 -3.7075 -1.1593 12 1 3.4743 -4.1616 -2.0793 13 6 3.9151 -2.4508 -0.7633 14 6 3.9096 -2.4472 0.7796 15 6 3.0984 -3.7024 1.1756 16 1 3.4502 -4.1562 2.1021 17 6 1.6168 -3.2986 1.2544 18 7 3.2456 -4.6152 0.0107 19 6 4.5611 -5.2687 0.0169 20 6 4.7244 -6.1399 -1.2457 21 6 5.5062 -7.3827 -0.7503 22 6 4.9000 -7.6318 0.6531 23 6 4.6731 -6.2167 1.2238 24 1 -0.4849 0.8401 -0.0004 25 1 0.1796 -2.2983 -0.0016 26 1 1.4659 -2.7053 -2.1482 27 1 1.0117 -4.2170 -1.3210 28 1 4.9359 -2.5228 -1.1388 29 1 3.4327 -1.5523 -1.1480 30 1 3.4233 -1.5470 1.1551 31 1 4.9276 -2.5174 1.1628 32 1 0.9971 -4.1935 1.3105 33 1 1.4524 -2.6845 2.1398 34 1 5.3504 -4.5181 0.0572 35 1 3.7496 -6.4330 -1.6355 36 1 5.2956 -5.6068 -2.0057 37 1 6.5716 -7.1643 -0.6777 38 1 5.3324 -8.2378 -1.4035 39 1 5.5995 -8.1875 1.2776 40 1 3.9535 -8.1661 0.5704 41 1 5.5173 -5.9266 1.8494 42 1 3.7514 -6.1915 1.8051 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062608833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:29 Heat of formation + Delta-G solvation = 62.430926 kcal Electronic energy + Delta-G solvation = -20042.633059 eV Core-core repulsion = 17410.463352 eV Total energy + Delta-G solvation = -2632.169706 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57107 -37.38038 -33.25433 -31.02911 -30.43321 -30.24901 -28.34555 -27.08119 -24.59866 -22.98096 -21.38883 -20.71878 -19.22804 -18.97239 -17.90628 -17.21293 -16.30216 -15.38917 -14.53003 -14.14225 -13.46226 -13.14715 -12.91377 -12.86822 -12.43143 -12.01033 -11.90569 -11.62807 -11.47115 -10.99811 -10.97082 -10.92396 -10.82879 -10.70682 -10.61287 -10.51696 -10.38903 -10.23836 -9.92246 -9.62166 -9.39776 -9.10057 -8.66390 -8.32765 -7.72832 -7.46739 -5.95619 -3.88914 3.29581 3.37736 3.38850 4.45243 4.60324 4.76982 4.85933 5.12194 5.33080 5.58222 5.61191 5.66280 5.73745 5.78411 5.81561 5.83923 5.97480 6.01918 6.10994 6.22942 6.27174 6.27591 6.33796 6.35164 6.44183 6.48328 6.60902 6.61437 6.78880 6.81425 6.95886 7.14423 7.14887 7.27548 7.34181 7.45957 7.61620 7.88944 7.95820 7.97005 8.06134 8.55883 9.14401 9.66651 11.14736 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.006710 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.474537 B = 4171.936405 C = 4259.927406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.877 3.123 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.566 4.566 8 H 0.137 0.863 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.073 3.927 12 H 0.066 0.934 13 C -0.167 4.167 14 C -0.168 4.168 15 C 0.072 3.928 16 H 0.067 0.933 17 C -0.092 4.092 18 N -0.499 5.499 19 C 0.069 3.931 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.116 4.116 24 H 0.257 0.743 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 -10.371 -0.022 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.705 3.295 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.602 4.602 8 H 0.154 0.846 9 C 0.012 3.988 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.084 0.916 13 C -0.205 4.205 14 C -0.205 4.205 15 C -0.036 4.036 16 H 0.086 0.914 17 C -0.131 4.131 18 N -0.222 5.222 19 C -0.040 4.040 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.154 4.154 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.334 -10.691 -0.011 13.556 hybrid contribution 1.131 1.570 -0.007 1.934 sum 9.465 -9.122 -0.018 13.145 Atomic orbital electron populations 1.69954 1.06099 1.26161 1.51259 1.25164 0.94660 0.99089 0.95232 0.86837 0.80042 0.84536 0.78100 1.20796 1.21440 1.19794 1.23676 0.97447 0.90228 1.48887 0.84639 1.19201 0.99278 0.91999 0.88307 1.22049 0.92624 0.97795 1.00887 1.22902 0.97768 0.90462 0.92380 0.91562 1.23832 0.97315 1.03286 0.96048 1.23855 0.97364 1.03347 0.95962 1.22928 0.97815 0.90396 0.92473 0.91447 1.21765 0.92596 0.97810 1.00885 1.65697 1.26251 1.26897 1.03379 1.22291 0.92022 0.95215 0.94478 1.22414 1.00429 0.95505 0.96939 1.22465 0.99156 0.97832 0.96651 1.22288 1.00361 0.96957 0.96051 1.22178 1.01495 0.94304 0.97457 0.93322 0.91916 0.93108 0.94497 0.95787 0.84922 0.84777 0.95819 0.94685 0.93073 0.94272 0.90634 0.92461 0.92084 0.91982 0.92415 0.91638 0.92689 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 12.60 55.43 0.70 -24.89 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.57 -14.10 4.58 -34.44 -0.16 -14.25 16 8 H 0.14 3.18 1.73 -101.99 -0.18 3.01 16 9 C 0.03 0.74 2.95 -90.78 -0.27 0.47 16 10 C -0.10 -2.06 5.50 -25.44 -0.14 -2.20 16 11 C 0.07 1.40 3.45 -65.48 -0.23 1.17 16 12 H 0.07 1.19 6.98 -51.93 -0.36 0.83 16 13 C -0.17 -3.30 5.03 -25.21 -0.13 -3.43 16 14 C -0.17 -3.32 5.00 -25.21 -0.13 -3.45 16 15 C 0.07 1.38 3.36 -65.46 -0.22 1.16 16 16 H 0.07 1.21 6.82 -51.93 -0.35 0.86 16 17 C -0.09 -2.00 5.35 -26.26 -0.14 -2.14 16 18 N -0.50 -9.03 4.69 -203.75 -0.96 -9.99 16 19 C 0.07 1.08 2.36 -66.59 -0.16 0.92 16 20 C -0.12 -1.58 5.11 -25.03 -0.13 -1.71 16 21 C -0.12 -1.41 6.91 -24.70 -0.17 -1.58 16 22 C -0.12 -1.39 6.83 -25.08 -0.17 -1.56 16 23 C -0.12 -1.60 5.82 -25.61 -0.15 -1.75 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.06 1.73 6.90 -51.93 -0.36 1.37 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.44 8.10 -51.93 -0.42 0.01 16 29 H 0.13 2.92 4.85 -51.93 -0.25 2.67 16 30 H 0.13 2.98 4.83 -51.93 -0.25 2.73 16 31 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.66 6.95 -51.93 -0.36 0.30 16 35 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 36 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.10 7.05 -51.93 -0.37 0.73 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -26.41 295.82 -10.19 -36.61 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.10 Total: 5.19 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -2.28 Total: -26.84 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.26 Total: -34.88 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.41 -10.19 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062608833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.037 kcal (2) G-P(sol) polarization free energy of solvation -26.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds