Wall clock time and date at job start Mon Mar 30 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48497 * 109.46942 * 269.99932 * 3 2 1 5 5 H 1.48498 * 109.46813 * 29.99824 * 3 2 1 6 6 H 1.48492 * 109.46966 * 149.99845 * 3 2 1 7 7 C 1.37879 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99696 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00331 * 0.02562 * 7 2 1 10 10 C 1.54752 * 109.71023 * 120.09309 * 9 7 2 11 11 C 1.53704 * 108.25059 * 65.69837 * 10 9 7 12 12 H 1.09000 * 112.12414 * 188.25511 * 11 10 9 13 13 C 1.54609 * 108.35591 * 312.65589 * 11 10 9 14 14 C 1.54290 * 104.83834 * 88.78798 * 13 11 10 15 15 C 1.54608 * 104.84246 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.72872 * 147.14173 * 15 14 13 17 17 C 1.53135 * 109.42891 * 240.22575 * 9 7 2 18 18 N 1.48715 * 104.22527 * 25.17676 * 15 14 13 19 19 C 1.46890 * 111.00036 * 77.51305 * 18 15 14 20 20 C 1.54269 * 110.03398 * 183.57077 * 19 18 15 21 21 C 1.54966 * 104.15982 * 217.13831 * 20 19 18 22 22 C 1.54887 * 102.77847 * 37.88768 * 21 20 19 23 23 C 1.53883 * 110.03320 * 66.35593 * 19 18 15 24 24 H 0.96999 * 119.99466 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.38232 * 0.09347 * 9 7 2 26 26 H 1.09000 * 109.43926 * 306.32985 * 10 9 7 27 27 H 1.09003 * 110.32308 * 185.58173 * 10 9 7 28 28 H 1.08999 * 110.36364 * 207.62611 * 13 11 10 29 29 H 1.08996 * 110.36688 * 329.84025 * 13 11 10 30 30 H 1.08996 * 110.36698 * 241.16585 * 14 13 11 31 31 H 1.09002 * 110.36860 * 118.84442 * 14 13 11 32 32 H 1.08999 * 109.56944 * 174.11351 * 17 9 7 33 33 H 1.09000 * 109.56813 * 53.87491 * 17 9 7 34 34 H 1.08998 * 110.01891 * 304.95961 * 19 18 15 35 35 H 1.09000 * 110.48310 * 335.78348 * 20 19 18 36 36 H 1.08994 * 110.48808 * 98.42538 * 20 19 18 37 37 H 1.08997 * 110.71716 * 279.56673 * 21 20 19 38 38 H 1.09003 * 110.92016 * 156.29744 * 21 20 19 39 39 H 1.09000 * 110.48205 * 203.40265 * 22 21 20 40 40 H 1.09001 * 110.48683 * 80.76578 * 22 21 20 41 41 H 1.09004 * 110.03036 * 238.56815 * 23 19 18 42 42 H 1.09001 * 110.02773 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 1.6231 -3.3167 -1.2596 11 6 3.1062 -3.7075 -1.1593 12 1 3.4743 -4.1616 -2.0793 13 6 3.9151 -2.4508 -0.7633 14 6 3.9096 -2.4472 0.7796 15 6 3.0984 -3.7024 1.1756 16 1 3.4502 -4.1562 2.1021 17 6 1.6168 -3.2986 1.2544 18 7 3.2456 -4.6152 0.0107 19 6 4.5611 -5.2687 0.0169 20 6 4.7244 -6.1399 -1.2457 21 6 5.5062 -7.3827 -0.7503 22 6 4.9000 -7.6318 0.6531 23 6 4.6731 -6.2167 1.2238 24 1 -0.4849 0.8401 -0.0004 25 1 0.1796 -2.2983 -0.0016 26 1 1.4659 -2.7053 -2.1482 27 1 1.0117 -4.2170 -1.3210 28 1 4.9359 -2.5228 -1.1388 29 1 3.4327 -1.5523 -1.1480 30 1 3.4233 -1.5470 1.1551 31 1 4.9276 -2.5174 1.1628 32 1 0.9971 -4.1935 1.3105 33 1 1.4524 -2.6845 2.1398 34 1 5.3504 -4.5181 0.0572 35 1 3.7496 -6.4330 -1.6355 36 1 5.2956 -5.6068 -2.0057 37 1 6.5716 -7.1643 -0.6777 38 1 5.3324 -8.2378 -1.4035 39 1 5.5995 -8.1875 1.2776 40 1 3.9535 -8.1661 0.5704 41 1 5.5173 -5.9266 1.8494 42 1 3.7514 -6.1915 1.8051 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062608833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:28 Heat of formation + Delta-G solvation = 48.691851 kcal Electronic energy + Delta-G solvation = -20043.228830 eV Core-core repulsion = 17410.463352 eV Total energy + Delta-G solvation = -2632.765478 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16093 -38.54839 -35.01102 -32.77654 -32.04374 -31.92144 -29.41253 -28.50204 -26.27194 -24.66712 -23.08330 -21.83607 -20.59892 -20.37604 -19.57926 -19.04860 -17.70816 -16.50628 -16.29850 -15.41397 -15.10999 -14.59831 -14.44947 -14.19266 -14.10733 -13.67408 -13.51126 -13.29646 -13.11044 -12.81978 -12.51536 -12.42559 -12.04346 -12.00646 -11.87517 -11.79794 -11.69118 -11.55545 -11.30374 -11.29481 -11.07207 -10.79475 -10.53689 -10.32906 -9.43793 -9.12538 -7.99232 -5.94678 1.42760 1.45284 1.52383 2.50111 3.18455 3.30762 3.72515 3.84989 4.02309 4.14668 4.18183 4.30408 4.57039 4.59880 4.66725 4.69055 4.69581 4.72172 4.79027 4.85719 4.88201 4.94542 5.00050 5.05537 5.08700 5.14524 5.23756 5.29850 5.30249 5.36697 5.44278 5.45203 5.55833 5.56325 5.63052 5.80300 5.87540 5.93670 5.99625 6.27507 6.54332 6.56265 7.14742 7.62513 9.12380 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.006710 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.474537 B = 4171.936405 C = 4259.927406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.002 4.002 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.257 1.257 7 C -0.554 4.554 8 H 0.159 0.841 9 C 0.024 3.976 10 C -0.090 4.090 11 C 0.081 3.919 12 H 0.086 0.914 13 C -0.164 4.164 14 C -0.165 4.165 15 C 0.080 3.920 16 H 0.087 0.913 17 C -0.087 4.087 18 N -0.501 5.501 19 C 0.066 3.934 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.116 4.116 24 H 0.251 0.749 25 H 0.015 0.985 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.054 -11.991 -0.039 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.198 4.198 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.590 4.590 8 H 0.175 0.825 9 C 0.005 3.995 10 C -0.129 4.129 11 C -0.028 4.028 12 H 0.104 0.896 13 C -0.202 4.202 14 C -0.203 4.203 15 C -0.028 4.028 16 H 0.105 0.895 17 C -0.126 4.126 18 N -0.224 5.224 19 C -0.043 4.043 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.509 -12.325 -0.028 16.863 hybrid contribution 0.144 1.981 0.000 1.987 sum 11.653 -10.344 -0.028 15.582 Atomic orbital electron populations 1.70137 1.07805 1.26320 1.54279 1.25921 0.95248 1.02501 0.96110 0.85870 0.79245 0.80578 0.77982 1.20632 1.22430 1.18054 1.24283 0.98649 0.90262 1.45792 0.82499 1.19187 0.96503 0.92999 0.90794 1.21911 0.95055 0.97099 0.98791 1.22781 0.95411 0.90788 0.93794 0.89618 1.23656 0.98420 1.02196 0.95960 1.23674 0.98402 1.02222 0.95969 1.22808 0.95420 0.90712 0.93897 0.89538 1.21628 0.95027 0.97104 0.98814 1.65625 1.28594 1.26040 1.02162 1.22435 0.89938 0.95429 0.96480 1.22411 1.00371 0.96338 0.96180 1.22447 0.99381 0.97114 0.96428 1.22279 1.00783 0.95762 0.96496 1.22181 1.01298 0.95210 0.96723 0.94027 0.96645 0.94625 0.94388 0.93444 0.87495 0.87437 0.93545 0.94644 0.94632 0.94705 0.91814 0.91926 0.90898 0.90588 0.90485 0.92065 0.91556 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 12.60 21.45 0.27 -56.25 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -28.04 4.58 25.60 0.12 -27.92 16 8 H 0.16 7.28 1.73 -49.41 -0.09 7.19 16 9 C 0.02 1.19 2.95 -10.90 -0.03 1.16 16 10 C -0.09 -3.93 5.50 31.43 0.17 -3.76 16 11 C 0.08 2.95 3.45 45.34 0.16 3.10 16 12 H 0.09 2.85 6.98 -2.39 -0.02 2.83 16 13 C -0.16 -6.13 5.03 31.58 0.16 -5.97 16 14 C -0.16 -6.16 5.00 31.58 0.16 -6.00 16 15 C 0.08 2.93 3.36 45.37 0.15 3.08 16 16 H 0.09 2.89 6.82 -2.39 -0.02 2.87 16 17 C -0.09 -3.82 5.35 30.90 0.17 -3.65 16 18 N -0.50 -17.03 4.69 -798.55 -3.75 -20.77 16 19 C 0.07 1.83 2.36 45.65 0.11 1.94 16 20 C -0.12 -2.76 5.11 31.70 0.16 -2.60 16 21 C -0.12 -2.17 6.91 31.91 0.22 -1.95 16 22 C -0.12 -2.27 6.83 31.67 0.22 -2.05 16 23 C -0.12 -2.80 5.82 31.32 0.18 -2.62 16 24 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.02 0.89 6.90 -2.39 -0.02 0.87 16 26 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.56 8.10 -2.39 -0.02 1.55 16 29 H 0.11 4.59 4.85 -2.39 -0.01 4.58 16 30 H 0.11 4.65 4.83 -2.39 -0.01 4.64 16 31 H 0.05 1.54 8.03 -2.39 -0.02 1.52 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.03 1.02 6.95 -2.39 -0.02 1.00 16 35 H 0.06 1.69 8.03 -2.39 -0.02 1.67 16 36 H 0.06 1.43 8.12 -2.39 -0.02 1.41 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.06 1.61 7.05 -2.39 -0.02 1.60 16 Total: -1.00 -58.21 295.82 1.86 -56.35 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.91 Total: 22.67 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 2.40 Total: -46.88 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.48 Total: -77.03 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -58.21 1.86 -56.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062608833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.047 kcal (2) G-P(sol) polarization free energy of solvation -58.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds