Wall clock time and date at job start Mon Mar 30 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00419 * 2 1 4 4 H 1.48503 * 109.47229 * 264.86850 * 3 2 1 5 5 H 1.48502 * 109.46804 * 24.86028 * 3 2 1 6 6 H 1.48493 * 109.47449 * 144.86408 * 3 2 1 7 7 C 1.37883 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99866 * 0.75940 * 7 2 1 9 9 C 1.50699 * 120.00256 * 180.76033 * 7 2 1 10 10 C 1.52999 * 115.54836 * 86.76633 * 9 7 2 11 11 N 1.46895 * 109.47085 * 64.81579 * 10 9 7 12 12 C 1.46904 * 110.99547 * 174.62887 * 11 10 9 13 13 C 1.53004 * 109.46718 * 183.47641 * 12 11 10 14 14 C 1.50701 * 109.46953 * 177.06292 * 13 12 11 15 15 C 1.29434 * 117.96628 * 94.73510 * 14 13 12 16 16 C 1.50070 * 124.08238 * 180.23567 * 15 14 13 17 17 C 1.53023 * 110.19610 * 343.31816 * 16 15 14 18 18 C 1.53395 * 108.43818 * 49.24550 * 17 16 15 19 19 C 1.50074 * 117.95755 * 274.99777 * 14 13 12 20 20 C 1.53002 * 117.49671 * 232.43827 * 9 7 2 21 21 C 1.53001 * 117.49822 * 301.09922 * 9 7 2 22 22 H 0.97001 * 119.99614 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46817 * 304.81273 * 10 9 7 24 24 H 1.09005 * 109.46843 * 184.81857 * 10 9 7 25 25 H 1.00896 * 111.00274 * 298.58543 * 11 10 9 26 26 H 1.08993 * 109.47084 * 63.47824 * 12 11 10 27 27 H 1.08997 * 109.47152 * 303.47116 * 12 11 10 28 28 H 1.09000 * 109.47484 * 57.05774 * 13 12 11 29 29 H 1.09002 * 109.46896 * 297.05937 * 13 12 11 30 30 H 1.08004 * 117.96296 * 0.46377 * 15 14 13 31 31 H 1.08997 * 109.48461 * 222.99886 * 16 15 14 32 32 H 1.09000 * 109.17962 * 103.44203 * 16 15 14 33 33 H 1.09005 * 109.64365 * 289.56368 * 17 16 15 34 34 H 1.08999 * 109.81632 * 169.03192 * 17 16 15 35 35 H 1.09010 * 109.63922 * 172.88135 * 18 17 16 36 36 H 1.08993 * 109.64315 * 52.25544 * 18 17 16 37 37 H 1.09007 * 109.35586 * 283.04950 * 19 14 13 38 38 H 1.08991 * 109.35973 * 42.77895 * 19 14 13 39 39 H 1.09000 * 117.49277 * 214.99688 * 20 9 7 40 40 H 1.08995 * 117.50306 * 0.02562 * 20 9 7 41 41 H 1.09001 * 117.50003 * 359.97335 * 21 9 7 42 42 H 1.08998 * 117.50274 * 144.96997 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6052 1.9837 -1.3945 5 1 1.3966 2.6815 0.5886 6 1 3.4883 1.4739 0.8057 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 -0.0114 9 6 3.5114 -1.1942 0.0179 10 6 4.1554 -1.1250 1.4040 11 7 3.8260 -2.3417 2.1583 12 6 4.5312 -2.3693 3.4467 13 6 4.2321 -3.6875 4.1635 14 6 5.0121 -3.7470 5.4516 15 6 4.4219 -3.3610 6.5370 16 6 5.0693 -3.3578 7.8908 17 6 6.3231 -4.2349 7.8789 18 6 7.1777 -3.8433 6.6667 19 6 6.4268 -4.2446 5.3952 20 6 4.2301 -2.0150 -1.0549 21 6 4.2312 -0.4861 -1.1317 22 1 -0.4849 0.8401 -0.0004 23 1 3.7766 -0.2530 1.9374 24 1 5.2373 -1.0445 1.2983 25 1 2.8293 -2.4271 2.2896 26 1 4.1944 -1.5359 4.0631 27 1 5.6043 -2.2842 3.2755 28 1 4.5211 -4.5222 3.5249 29 1 3.1658 -3.7488 4.3813 30 1 3.3985 -3.0234 6.4644 31 1 4.3669 -3.7416 8.6306 32 1 5.3453 -2.3365 8.1534 33 1 6.0360 -5.2836 7.8013 34 1 6.8928 -4.0778 8.7948 35 1 8.1335 -4.3657 6.7080 36 1 7.3450 -2.7663 6.6690 37 1 6.4244 -5.3309 5.3046 38 1 6.9280 -3.8109 4.5299 39 1 5.1618 -2.5055 -0.7731 40 1 3.6131 -2.5545 -1.7734 41 1 3.6148 -0.0205 -1.9007 42 1 5.1632 0.0295 -0.9004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:52 Heat of formation + Delta-G solvation = 13.661010 kcal Electronic energy + Delta-G solvation = -18070.120750 eV Core-core repulsion = 15435.836221 eV Total energy + Delta-G solvation = -2634.284529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.88465 -37.29453 -35.10366 -32.38868 -32.03351 -30.83060 -28.20000 -25.79364 -24.26043 -23.29111 -22.20533 -21.47161 -20.95057 -18.86650 -17.57818 -16.21023 -15.74273 -15.37517 -14.85318 -14.50760 -14.21924 -13.89656 -13.79306 -13.53209 -12.96008 -12.70097 -12.59220 -12.35588 -12.24390 -11.99913 -11.73091 -11.28072 -11.04427 -10.95794 -10.90883 -10.65438 -10.40584 -10.35285 -10.19706 -9.97564 -9.49040 -8.92990 -8.71109 -8.58415 -8.38421 -7.61896 -6.08383 -4.10508 2.27292 3.31072 3.39477 3.44327 4.44710 4.52499 4.61738 4.76571 4.80133 5.12359 5.18703 5.22809 5.31504 5.36142 5.43773 5.47499 5.52062 5.69096 5.71192 5.77824 5.84678 5.88216 5.89659 5.96334 6.08959 6.17620 6.20178 6.21617 6.32212 6.35962 6.46599 6.57704 6.59744 6.70995 6.85637 7.09067 7.15860 7.24866 7.80797 7.83263 8.18537 8.56698 8.96857 9.55985 11.03477 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.004388 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.227574 B = 6378.931627 C = 6708.572786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.075 3.925 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.078 0.922 9 C 0.007 3.993 10 C 0.099 3.901 11 N -0.680 5.680 12 C 0.066 3.934 13 C -0.086 4.086 14 C -0.111 4.111 15 C -0.167 4.167 16 C -0.087 4.087 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.083 4.083 20 C -0.167 4.167 21 C -0.209 4.209 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.044 0.956 25 H 0.352 0.648 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -6.259 13.215 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.127 4.127 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.030 4.030 11 N -0.312 5.312 12 C -0.064 4.064 13 C -0.124 4.124 14 C -0.111 4.111 15 C -0.185 4.185 16 C -0.124 4.124 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.120 4.120 20 C -0.205 4.205 21 C -0.247 4.247 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.171 0.829 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.871 -6.519 12.890 19.347 hybrid contribution -0.192 1.752 0.377 1.802 sum 12.678 -4.767 13.266 18.959 Atomic orbital electron populations 1.69900 1.06320 1.27006 1.50585 1.24997 0.94558 0.98998 0.94113 0.86851 0.80105 0.83313 0.78750 1.20309 1.22437 1.18687 1.20324 0.86648 0.94318 1.50840 0.90352 1.19339 0.94571 0.99316 0.86212 1.21610 0.96913 0.89740 0.94766 1.60353 1.14457 1.39693 1.16653 1.21843 0.98996 0.95174 0.90396 1.20730 0.99151 0.98785 0.93697 1.20865 0.95812 0.99433 0.95030 1.21900 1.00123 1.02497 0.93977 1.20391 0.96624 1.00000 0.95375 1.21598 0.96320 0.99860 0.97984 1.21609 0.98080 1.01386 0.94695 1.20401 0.92726 1.00740 0.98167 1.22674 1.01236 0.92136 1.04433 1.23012 1.01488 0.95425 1.04786 0.92669 0.95715 0.93800 0.82853 0.96170 0.91978 0.90550 0.91567 0.87972 0.91432 0.91316 0.91872 0.92051 0.91896 0.91836 0.90998 0.90887 0.90978 0.89954 0.89604 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.91 24.77 -169.99 -4.21 17.69 16 4 H -0.28 -6.78 7.02 56.52 0.40 -6.38 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.25 5.96 56.52 0.34 -5.91 16 7 C -0.48 -13.33 8.91 -34.44 -0.31 -13.64 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.01 0.16 1.05 -155.66 -0.16 0.00 16 10 C 0.10 2.10 5.25 -3.83 -0.02 2.08 16 11 N -0.68 -13.06 6.45 -113.78 -0.73 -13.79 16 12 C 0.07 1.04 5.66 -3.82 -0.02 1.02 16 13 C -0.09 -1.17 5.51 -27.88 -0.15 -1.33 16 14 C -0.11 -1.33 5.09 -100.93 -0.51 -1.84 16 15 C -0.17 -1.93 9.37 -35.90 -0.34 -2.27 16 16 C -0.09 -0.83 6.11 -28.18 -0.17 -1.00 16 17 C -0.12 -1.03 6.01 -26.51 -0.16 -1.19 16 18 C -0.12 -1.09 6.01 -26.52 -0.16 -1.25 16 19 C -0.08 -0.87 5.80 -28.17 -0.16 -1.03 16 20 C -0.17 -3.55 9.96 -26.69 -0.27 -3.82 16 21 C -0.21 -4.58 7.60 -26.69 -0.20 -4.79 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.56 6.74 -51.93 -0.35 0.21 16 24 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 25 H 0.35 7.24 8.33 -39.29 -0.33 6.91 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 28 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 29 H 0.07 0.92 7.80 -51.93 -0.41 0.51 16 30 H 0.10 1.22 7.74 -52.48 -0.41 0.81 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.12 -51.93 -0.42 0.12 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.09 1.97 7.10 -51.93 -0.37 1.61 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -28.80 328.92 -9.76 -38.55 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.81 Total: 6.06 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.74 Total: -27.01 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.04 Total: -40.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.21 Total: 17.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.80 -9.76 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.215 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds