Wall clock time and date at job start Mon Mar 30 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00419 * 2 1 4 4 H 1.48503 * 109.47229 * 264.86850 * 3 2 1 5 5 H 1.48502 * 109.46804 * 24.86028 * 3 2 1 6 6 H 1.48493 * 109.47449 * 144.86408 * 3 2 1 7 7 C 1.37883 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99866 * 0.75940 * 7 2 1 9 9 C 1.50699 * 120.00256 * 180.76033 * 7 2 1 10 10 C 1.52999 * 115.54836 * 86.76633 * 9 7 2 11 11 N 1.46895 * 109.47085 * 64.81579 * 10 9 7 12 12 C 1.46904 * 110.99547 * 174.62887 * 11 10 9 13 13 C 1.53004 * 109.46718 * 183.47641 * 12 11 10 14 14 C 1.50701 * 109.46953 * 177.06292 * 13 12 11 15 15 C 1.29434 * 117.96628 * 94.73510 * 14 13 12 16 16 C 1.50070 * 124.08238 * 180.23567 * 15 14 13 17 17 C 1.53023 * 110.19610 * 343.31816 * 16 15 14 18 18 C 1.53395 * 108.43818 * 49.24550 * 17 16 15 19 19 C 1.50074 * 117.95755 * 274.99777 * 14 13 12 20 20 C 1.53002 * 117.49671 * 232.43827 * 9 7 2 21 21 C 1.53001 * 117.49822 * 301.09922 * 9 7 2 22 22 H 0.97001 * 119.99614 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46817 * 304.81273 * 10 9 7 24 24 H 1.09005 * 109.46843 * 184.81857 * 10 9 7 25 25 H 1.00896 * 111.00274 * 298.58543 * 11 10 9 26 26 H 1.08993 * 109.47084 * 63.47824 * 12 11 10 27 27 H 1.08997 * 109.47152 * 303.47116 * 12 11 10 28 28 H 1.09000 * 109.47484 * 57.05774 * 13 12 11 29 29 H 1.09002 * 109.46896 * 297.05937 * 13 12 11 30 30 H 1.08004 * 117.96296 * 0.46377 * 15 14 13 31 31 H 1.08997 * 109.48461 * 222.99886 * 16 15 14 32 32 H 1.09000 * 109.17962 * 103.44203 * 16 15 14 33 33 H 1.09005 * 109.64365 * 289.56368 * 17 16 15 34 34 H 1.08999 * 109.81632 * 169.03192 * 17 16 15 35 35 H 1.09010 * 109.63922 * 172.88135 * 18 17 16 36 36 H 1.08993 * 109.64315 * 52.25544 * 18 17 16 37 37 H 1.09007 * 109.35586 * 283.04950 * 19 14 13 38 38 H 1.08991 * 109.35973 * 42.77895 * 19 14 13 39 39 H 1.09000 * 117.49277 * 214.99688 * 20 9 7 40 40 H 1.08995 * 117.50306 * 0.02562 * 20 9 7 41 41 H 1.09001 * 117.50003 * 359.97335 * 21 9 7 42 42 H 1.08998 * 117.50274 * 144.96997 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6052 1.9837 -1.3945 5 1 1.3966 2.6815 0.5886 6 1 3.4883 1.4739 0.8057 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 -0.0114 9 6 3.5114 -1.1942 0.0179 10 6 4.1554 -1.1250 1.4040 11 7 3.8260 -2.3417 2.1583 12 6 4.5312 -2.3693 3.4467 13 6 4.2321 -3.6875 4.1635 14 6 5.0121 -3.7470 5.4516 15 6 4.4219 -3.3610 6.5370 16 6 5.0693 -3.3578 7.8908 17 6 6.3231 -4.2349 7.8789 18 6 7.1777 -3.8433 6.6667 19 6 6.4268 -4.2446 5.3952 20 6 4.2301 -2.0150 -1.0549 21 6 4.2312 -0.4861 -1.1317 22 1 -0.4849 0.8401 -0.0004 23 1 3.7766 -0.2530 1.9374 24 1 5.2373 -1.0445 1.2983 25 1 2.8293 -2.4271 2.2896 26 1 4.1944 -1.5359 4.0631 27 1 5.6043 -2.2842 3.2755 28 1 4.5211 -4.5222 3.5249 29 1 3.1658 -3.7488 4.3813 30 1 3.3985 -3.0234 6.4644 31 1 4.3669 -3.7416 8.6306 32 1 5.3453 -2.3365 8.1534 33 1 6.0360 -5.2836 7.8013 34 1 6.8928 -4.0778 8.7948 35 1 8.1335 -4.3657 6.7080 36 1 7.3450 -2.7663 6.6690 37 1 6.4244 -5.3309 5.3046 38 1 6.9280 -3.8109 4.5299 39 1 5.1618 -2.5055 -0.7731 40 1 3.6131 -2.5545 -1.7734 41 1 3.6148 -0.0205 -1.9007 42 1 5.1632 0.0295 -0.9004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:52 Heat of formation + Delta-G solvation = -2.549202 kcal Electronic energy + Delta-G solvation = -18070.823678 eV Core-core repulsion = 15435.836221 eV Total energy + Delta-G solvation = -2634.987456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78185 -38.98058 -36.45858 -34.22564 -33.47178 -31.60741 -29.42710 -27.77005 -25.74974 -24.15777 -23.43002 -23.04896 -21.97374 -20.77370 -18.44429 -18.16473 -16.97878 -16.68660 -16.65481 -15.68796 -15.37300 -15.22888 -14.92199 -14.71665 -14.61689 -14.19537 -13.84758 -13.53498 -13.30562 -13.21238 -13.05708 -12.77501 -12.69995 -12.45999 -12.08604 -11.94563 -11.88546 -11.62645 -11.42950 -11.24139 -10.99261 -10.88918 -10.61640 -10.24547 -9.61563 -9.18674 -8.28357 -6.34039 1.34381 1.34780 1.36666 1.48314 2.36938 3.05200 3.09999 3.57480 3.79621 3.93832 4.08325 4.09925 4.23464 4.33990 4.42043 4.46464 4.47833 4.53411 4.56614 4.67771 4.73317 4.74579 4.78815 4.82463 4.89628 4.95657 5.04448 5.08845 5.14471 5.16738 5.19627 5.23765 5.37376 5.40317 5.49006 5.53092 5.75558 5.80009 6.17772 6.27507 6.38236 6.53493 6.76785 7.35552 8.87170 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.004388 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.227574 B = 6378.931627 C = 6708.572786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.021 3.979 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.301 1.301 6 H -0.241 1.241 7 C -0.479 4.479 8 H 0.033 0.967 9 C -0.019 4.019 10 C 0.106 3.894 11 N -0.684 5.684 12 C 0.070 3.930 13 C -0.079 4.079 14 C -0.120 4.120 15 C -0.169 4.169 16 C -0.088 4.088 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.153 4.153 21 C -0.201 4.201 22 H 0.264 0.736 23 H 0.008 0.992 24 H 0.068 0.932 25 H 0.339 0.661 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.607 -6.009 14.166 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.229 1.229 6 H -0.164 1.164 7 C -0.517 4.517 8 H 0.052 0.948 9 C -0.020 4.020 10 C -0.023 4.023 11 N -0.314 5.314 12 C -0.059 4.059 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.187 4.187 16 C -0.125 4.125 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.120 4.120 20 C -0.190 4.190 21 C -0.239 4.239 22 H 0.073 0.927 23 H 0.026 0.974 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.928 -6.287 13.842 22.019 hybrid contribution -1.202 1.562 0.079 1.973 sum 14.726 -4.725 13.921 20.807 Atomic orbital electron populations 1.70046 1.08214 1.27867 1.52895 1.25787 0.95159 1.02660 0.94041 0.85914 0.79495 0.78724 0.79455 1.19225 1.22883 1.16404 1.20448 0.89253 0.92470 1.49495 0.94844 1.19297 0.92225 1.02251 0.88266 1.21481 0.97850 0.89749 0.93247 1.60394 1.13749 1.38775 1.18469 1.21888 0.99055 0.96073 0.88877 1.20635 0.98945 0.97540 0.94545 1.20875 0.96711 1.00365 0.94077 1.22087 0.99815 1.01652 0.95155 1.20445 0.97282 1.00645 0.94126 1.21607 0.95863 0.99537 0.98582 1.21613 0.98652 1.01297 0.94039 1.20426 0.91598 1.01041 0.98947 1.22690 1.01606 0.92112 1.02606 1.23051 1.02003 0.95942 1.02924 0.92725 0.97423 0.91374 0.84329 0.96813 0.90814 0.90697 0.92565 0.89047 0.90496 0.90872 0.91877 0.90395 0.90333 0.92268 0.90394 0.91116 0.88231 0.90996 0.91014 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.02 1.19 5.47 84.66 0.46 1.65 16 3 Si 0.94 44.84 24.77 68.60 1.70 46.53 16 4 H -0.27 -12.25 7.02 99.48 0.70 -11.55 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.24 -10.59 5.96 99.48 0.59 -10.00 16 7 C -0.48 -26.98 8.91 25.60 0.23 -26.76 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C -0.02 -0.88 1.05 -52.93 -0.06 -0.93 16 10 C 0.11 4.31 5.25 86.30 0.45 4.76 16 11 N -0.68 -25.81 6.45 -513.89 -3.31 -29.13 16 12 C 0.07 2.15 5.66 86.30 0.49 2.64 16 13 C -0.08 -2.11 5.51 29.85 0.16 -1.95 16 14 C -0.12 -2.73 5.09 -15.09 -0.08 -2.80 16 15 C -0.17 -3.73 9.37 27.05 0.25 -3.48 16 16 C -0.09 -1.50 6.11 29.66 0.18 -1.32 16 17 C -0.12 -1.73 6.01 30.73 0.18 -1.55 16 18 C -0.12 -1.84 6.01 30.73 0.18 -1.65 16 19 C -0.08 -1.56 5.80 29.66 0.17 -1.39 16 20 C -0.15 -6.15 9.96 30.62 0.30 -5.84 16 21 C -0.20 -8.24 7.60 30.62 0.23 -8.01 16 22 H 0.26 15.58 8.31 -92.71 -0.77 14.80 16 23 H 0.01 0.33 6.74 -2.39 -0.02 0.32 16 24 H 0.07 2.44 8.06 -2.38 -0.02 2.42 16 25 H 0.34 14.26 8.33 -89.70 -0.75 13.51 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 28 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 29 H 0.06 1.59 7.80 -2.39 -0.02 1.57 16 30 H 0.09 2.17 7.74 -2.91 -0.02 2.15 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 0.93 8.12 -2.38 -0.02 0.91 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.97 8.12 -2.39 -0.02 0.96 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.07 3.14 7.10 -2.39 -0.02 3.13 16 42 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -62.53 328.92 1.95 -60.57 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.09 Total: 27.76 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.18 Total: -46.64 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -3.01 Total: -88.23 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.70 Total: 46.53 kcal Total: -62.53 1.95 -60.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.023 kcal (2) G-P(sol) polarization free energy of solvation -62.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds