Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46928 * 60.00617 * 4 3 2 6 6 C 1.53001 * 109.46695 * 299.99669 * 5 4 3 7 7 N 1.46504 * 109.46850 * 179.97438 * 6 5 4 8 8 C 1.36934 * 119.99567 * 60.00373 * 7 6 5 9 9 H 1.08001 * 120.00537 * 359.97438 * 8 7 6 10 10 C 1.38811 * 119.99798 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00134 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47228 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.46793 * 299.99987 * 12 10 8 15 15 H 1.48500 * 109.47000 * 60.00079 * 12 10 8 16 16 C 1.53000 * 109.46992 * 240.00536 * 2 1 3 17 17 C 1.53001 * 109.47422 * 300.00031 * 6 5 4 18 18 C 1.53000 * 109.46975 * 59.99917 * 17 6 5 19 19 C 1.53001 * 109.46975 * 179.97438 * 18 17 6 20 20 C 1.52993 * 109.47728 * 300.00532 * 4 3 2 21 21 C 1.52993 * 109.47294 * 120.00156 * 2 1 3 22 22 H 1.09005 * 109.46510 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46962 * 299.99480 * 1 2 3 24 24 H 1.08993 * 109.46832 * 59.99813 * 1 2 3 25 25 H 1.08998 * 109.47077 * 300.00416 * 3 2 1 26 26 H 1.09007 * 109.46685 * 60.00198 * 3 2 1 27 27 H 1.09005 * 109.47059 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47058 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47219 * 59.99412 * 5 4 3 30 30 H 0.97000 * 119.99825 * 239.99554 * 7 6 5 31 31 H 0.97005 * 119.99717 * 0.02562 * 11 10 8 32 32 H 1.08998 * 109.47307 * 59.99474 * 16 2 1 33 33 H 1.09005 * 109.46653 * 299.99408 * 16 2 1 34 34 H 1.08997 * 109.47361 * 179.97438 * 17 6 5 35 35 H 1.09001 * 109.46667 * 300.00170 * 17 6 5 36 36 H 1.08997 * 109.47361 * 300.00057 * 19 18 17 37 37 H 1.09001 * 109.46667 * 60.00254 * 19 18 17 38 38 H 1.08998 * 109.46846 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.46951 * 300.00083 * 20 4 3 40 40 H 1.08994 * 109.47711 * 179.97438 * 20 4 3 41 41 H 1.08998 * 109.47413 * 300.00088 * 21 2 1 42 42 H 1.09005 * 109.47444 * 59.99922 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2484 6 6 3.5705 -0.7213 -1.2484 7 7 4.0588 -1.4118 -2.4447 8 6 5.4051 -1.5369 -2.6614 9 1 6.1070 -1.1262 -1.9507 10 6 5.8678 -2.1916 -3.7946 11 7 5.0125 -2.6927 -4.6605 12 14 7.7044 -2.3617 -4.0906 13 1 7.9352 -3.0962 -5.3604 14 1 8.3183 -1.0125 -4.1800 15 1 8.3196 -3.1120 -2.9664 16 6 2.0400 -0.7211 -1.2493 17 6 4.0801 -1.4425 0.0011 18 6 3.5696 -0.7211 1.2500 19 6 4.0786 -1.4426 2.4995 20 6 4.0796 0.7214 1.2500 21 6 2.0401 -0.7212 1.2492 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.9333 2.4703 0.0002 28 1 5.1704 0.7208 -1.2478 29 1 3.7175 1.2349 -2.1386 30 1 3.4284 -1.7805 -3.0831 31 1 4.0588 -2.6040 -4.5070 32 1 1.6766 -0.2073 -2.1392 33 1 1.6767 -1.7489 -1.2493 34 1 3.7164 -2.4700 0.0013 35 1 5.1701 -1.4424 0.0014 36 1 3.7149 -2.4701 2.4993 37 1 5.1686 -1.4429 2.5001 38 1 3.7154 -0.9284 3.3893 39 1 3.7159 1.2353 2.1399 40 1 5.1695 0.7211 1.2503 41 1 1.6768 -0.2075 2.1392 42 1 1.6767 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087039101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = -24.740084 kcal Electronic energy + Delta-G solvation = -20219.401808 eV Core-core repulsion = 17583.452083 eV Total energy + Delta-G solvation = -2635.949725 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27894 -35.17979 -34.41930 -32.99539 -31.84893 -28.11993 -26.63493 -26.32504 -25.67226 -25.47153 -23.39821 -20.83198 -19.64880 -19.48542 -17.05451 -16.79398 -15.03628 -14.25714 -14.18038 -14.01494 -13.89281 -13.76342 -13.59078 -13.56537 -12.96495 -12.59323 -12.28489 -11.84129 -11.72441 -11.69455 -11.54275 -11.35276 -10.80147 -10.72365 -10.48246 -10.41021 -10.34576 -10.19689 -10.10839 -10.01048 -9.62278 -9.47661 -9.22322 -8.88525 -8.72446 -6.93087 -6.01317 -2.99925 3.54636 3.58186 3.75455 4.67566 4.79156 4.83766 4.86322 5.22809 5.31854 5.39982 5.47474 5.60584 5.61435 5.70495 5.76254 5.79018 5.83145 5.86594 5.90220 5.97747 6.00370 6.03974 6.04736 6.12615 6.13413 6.23059 6.27381 6.32314 6.37839 6.48903 6.53639 6.56333 6.66638 6.67950 6.85319 6.87051 7.00290 7.18043 7.28085 7.90459 8.84186 9.32813 10.19312 10.35395 11.47214 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.007688 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.402986 B = 3641.228407 C = 3954.326276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.098 4.098 4 C -0.087 4.087 5 C -0.112 4.112 6 C 0.214 3.786 7 N -0.733 5.733 8 C -0.317 4.317 9 H 0.064 0.936 10 C -0.049 4.049 11 N -0.948 5.948 12 Si 1.076 2.924 13 H -0.286 1.286 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.061 4.061 19 C -0.138 4.138 20 C -0.097 4.097 21 C -0.091 4.091 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.365 0.635 31 H 0.254 0.746 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 6.804 13.181 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.056 4.056 3 C -0.135 4.135 4 C -0.107 4.107 5 C -0.152 4.152 6 C 0.123 3.877 7 N -0.375 5.375 8 C -0.448 4.448 9 H 0.082 0.918 10 C -0.246 4.246 11 N -0.594 5.594 12 Si 0.907 3.093 13 H -0.211 1.211 14 H -0.224 1.224 15 H -0.224 1.224 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.062 4.062 19 C -0.196 4.196 20 C -0.134 4.134 21 C -0.128 4.128 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.441 6.263 12.249 14.794 hybrid contribution -1.246 0.507 0.870 1.602 sum -6.687 6.770 13.118 16.206 Atomic orbital electron populations 1.21848 0.95171 1.01442 1.01196 1.20439 0.94245 0.95378 0.95564 1.21540 0.95536 0.95575 1.00853 1.21120 0.95019 0.98508 0.96004 1.21953 1.00913 0.96978 0.95306 1.19361 0.90451 0.90612 0.87308 1.42505 1.04607 1.67489 1.22850 1.19935 0.83469 1.33961 1.07431 0.91833 1.25667 1.06598 0.98611 0.93737 1.70874 1.02379 1.48634 1.37549 0.83293 0.74341 0.75789 0.75856 1.21144 1.22427 1.22433 1.21721 0.96336 0.99670 0.96415 1.21967 1.00855 0.98331 0.93148 1.20542 0.94802 0.95198 0.95661 1.21835 1.00916 0.99959 0.96849 1.21521 1.00072 0.94914 0.96939 1.21550 0.94907 0.99790 0.96560 0.92861 0.93074 0.92855 0.92372 0.92726 0.92151 0.92034 0.92888 0.80126 0.93469 0.92417 0.92426 0.92912 0.92038 0.92954 0.92838 0.93365 0.92911 0.92300 0.92718 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.47 37.16 0.31 -1.35 16 2 C -0.06 -0.78 0.77 -154.51 -0.12 -0.90 16 3 C -0.10 -1.34 4.47 -26.73 -0.12 -1.46 16 4 C -0.09 -1.32 3.19 -90.62 -0.29 -1.61 16 5 C -0.11 -2.13 4.44 -26.73 -0.12 -2.25 16 6 C 0.21 4.27 0.89 -131.79 -0.12 4.16 16 7 N -0.73 -18.37 5.14 -47.20 -0.24 -18.61 16 8 C -0.32 -8.82 8.67 -15.06 -0.13 -8.95 16 9 H 0.06 1.76 6.69 -52.49 -0.35 1.41 16 10 C -0.05 -1.44 5.50 -17.43 -0.10 -1.53 16 11 N -0.95 -29.63 13.70 55.49 0.76 -28.87 16 12 Si 1.08 26.37 29.92 -169.99 -5.09 21.29 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 16 C -0.10 -1.79 3.87 -26.70 -0.10 -1.89 16 17 C -0.10 -1.96 3.72 -26.73 -0.10 -2.06 16 18 C -0.06 -0.91 0.77 -154.53 -0.12 -1.03 16 19 C -0.14 -1.82 8.47 37.16 0.31 -1.51 16 20 C -0.10 -1.39 4.47 -26.73 -0.12 -1.51 16 21 C -0.09 -1.24 3.75 -26.76 -0.10 -1.34 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.29 7.27 -51.93 -0.38 0.92 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.37 9.58 6.50 -40.82 -0.27 9.31 16 31 H 0.25 7.83 6.77 -40.82 -0.28 7.56 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.29 7.27 -51.93 -0.38 0.92 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -30.07 304.46 -8.51 -38.58 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.63 Total: 6.27 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.90 Total: -23.24 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.52 Total: -47.48 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.09 Total: 21.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.07 -8.51 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087039101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds