Wall clock time and date at job start Mon Mar 30 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46928 * 60.00617 * 4 3 2 6 6 C 1.53001 * 109.46695 * 299.99669 * 5 4 3 7 7 N 1.46504 * 109.46850 * 179.97438 * 6 5 4 8 8 C 1.36934 * 119.99567 * 60.00373 * 7 6 5 9 9 H 1.08001 * 120.00537 * 359.97438 * 8 7 6 10 10 C 1.38811 * 119.99798 * 179.97438 * 8 7 6 11 11 N 1.31624 * 120.00134 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00229 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47228 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.46793 * 299.99987 * 12 10 8 15 15 H 1.48500 * 109.47000 * 60.00079 * 12 10 8 16 16 C 1.53000 * 109.46992 * 240.00536 * 2 1 3 17 17 C 1.53001 * 109.47422 * 300.00031 * 6 5 4 18 18 C 1.53000 * 109.46975 * 59.99917 * 17 6 5 19 19 C 1.53001 * 109.46975 * 179.97438 * 18 17 6 20 20 C 1.52993 * 109.47728 * 300.00532 * 4 3 2 21 21 C 1.52993 * 109.47294 * 120.00156 * 2 1 3 22 22 H 1.09005 * 109.46510 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46962 * 299.99480 * 1 2 3 24 24 H 1.08993 * 109.46832 * 59.99813 * 1 2 3 25 25 H 1.08998 * 109.47077 * 300.00416 * 3 2 1 26 26 H 1.09007 * 109.46685 * 60.00198 * 3 2 1 27 27 H 1.09005 * 109.47059 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47058 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47219 * 59.99412 * 5 4 3 30 30 H 0.97000 * 119.99825 * 239.99554 * 7 6 5 31 31 H 0.97005 * 119.99717 * 0.02562 * 11 10 8 32 32 H 1.08998 * 109.47307 * 59.99474 * 16 2 1 33 33 H 1.09005 * 109.46653 * 299.99408 * 16 2 1 34 34 H 1.08997 * 109.47361 * 179.97438 * 17 6 5 35 35 H 1.09001 * 109.46667 * 300.00170 * 17 6 5 36 36 H 1.08997 * 109.47361 * 300.00057 * 19 18 17 37 37 H 1.09001 * 109.46667 * 60.00254 * 19 18 17 38 38 H 1.08998 * 109.46846 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.46951 * 300.00083 * 20 4 3 40 40 H 1.08994 * 109.47711 * 179.97438 * 20 4 3 41 41 H 1.08998 * 109.47413 * 300.00088 * 21 2 1 42 42 H 1.09005 * 109.47444 * 59.99922 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0805 0.7212 -1.2484 6 6 3.5705 -0.7213 -1.2484 7 7 4.0588 -1.4118 -2.4447 8 6 5.4051 -1.5369 -2.6614 9 1 6.1070 -1.1262 -1.9507 10 6 5.8678 -2.1916 -3.7946 11 7 5.0125 -2.6927 -4.6605 12 14 7.7044 -2.3617 -4.0906 13 1 7.9352 -3.0962 -5.3604 14 1 8.3183 -1.0125 -4.1800 15 1 8.3196 -3.1120 -2.9664 16 6 2.0400 -0.7211 -1.2493 17 6 4.0801 -1.4425 0.0011 18 6 3.5696 -0.7211 1.2500 19 6 4.0786 -1.4426 2.4995 20 6 4.0796 0.7214 1.2500 21 6 2.0401 -0.7212 1.2492 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 3.9333 2.4703 0.0002 28 1 5.1704 0.7208 -1.2478 29 1 3.7175 1.2349 -2.1386 30 1 3.4284 -1.7805 -3.0831 31 1 4.0588 -2.6040 -4.5070 32 1 1.6766 -0.2073 -2.1392 33 1 1.6767 -1.7489 -1.2493 34 1 3.7164 -2.4700 0.0013 35 1 5.1701 -1.4424 0.0014 36 1 3.7149 -2.4701 2.4993 37 1 5.1686 -1.4429 2.5001 38 1 3.7154 -0.9284 3.3893 39 1 3.7159 1.2353 2.1399 40 1 5.1695 0.7211 1.2503 41 1 1.6768 -0.2075 2.1392 42 1 1.6767 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087039101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:15 Heat of formation + Delta-G solvation = -41.630735 kcal Electronic energy + Delta-G solvation = -20220.134242 eV Core-core repulsion = 17583.452083 eV Total energy + Delta-G solvation = -2636.682159 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59693 -37.01249 -35.58521 -34.35553 -33.69501 -30.01934 -27.69912 -27.49708 -26.98964 -26.82651 -25.52639 -22.14104 -21.19232 -20.71175 -19.01562 -18.23040 -16.86339 -15.84783 -15.41547 -15.39610 -15.36837 -15.25463 -15.03014 -14.91159 -14.41601 -14.05852 -13.37383 -13.09306 -12.95295 -12.79926 -12.73691 -12.67276 -12.59894 -12.55270 -11.96442 -11.94732 -11.77550 -11.65638 -11.57886 -11.49249 -11.24158 -10.99580 -10.75682 -10.50744 -10.44027 -9.05049 -8.35518 -5.27326 1.53187 1.63522 1.79655 2.70103 3.41232 3.45499 3.60486 3.63977 4.02988 4.05135 4.13814 4.26923 4.34568 4.39977 4.45305 4.46104 4.47585 4.60228 4.72691 4.78326 4.80944 4.87282 4.92363 4.97355 5.00066 5.02560 5.09804 5.12810 5.23020 5.26504 5.27554 5.29264 5.35176 5.38929 5.46450 5.50269 5.65811 5.69474 5.70752 5.77437 6.52492 7.14661 8.05392 8.17901 9.16661 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.007688 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.402986 B = 3641.228407 C = 3954.326276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.094 4.094 4 C -0.084 4.084 5 C -0.106 4.106 6 C 0.200 3.800 7 N -0.749 5.749 8 C -0.304 4.304 9 H 0.061 0.939 10 C -0.113 4.113 11 N -0.981 5.981 12 Si 1.122 2.878 13 H -0.293 1.293 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.099 4.099 17 C -0.095 4.095 18 C -0.058 4.058 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.088 4.088 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.354 0.646 31 H 0.241 0.759 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.718 8.508 16.215 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.053 4.053 3 C -0.132 4.132 4 C -0.103 4.103 5 C -0.146 4.146 6 C 0.111 3.889 7 N -0.389 5.389 8 C -0.436 4.436 9 H 0.079 0.921 10 C -0.303 4.303 11 N -0.630 5.630 12 Si 0.947 3.053 13 H -0.219 1.219 14 H -0.206 1.206 15 H -0.207 1.207 16 C -0.137 4.137 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.192 4.192 20 C -0.132 4.132 21 C -0.125 4.125 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.186 0.814 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.402 7.998 15.339 18.446 hybrid contribution -0.965 -0.018 -0.073 0.968 sum -7.367 7.981 15.266 18.735 Atomic orbital electron populations 1.21805 0.92988 1.01897 1.02509 1.20461 0.95935 0.95307 0.93614 1.21553 0.93848 0.95302 1.02458 1.21120 0.96481 0.98751 0.93906 1.21843 0.98914 0.96578 0.97263 1.19752 0.92580 0.90748 0.85782 1.42813 1.03621 1.68045 1.24442 1.20164 0.84849 1.31997 1.06608 0.92136 1.27058 1.10071 0.99121 0.94090 1.70986 1.01962 1.51163 1.38916 0.82692 0.70171 0.76584 0.75803 1.21861 1.20623 1.20663 1.21689 0.94028 0.99544 0.98412 1.21837 0.98708 0.97729 0.95219 1.20536 0.96080 0.95352 0.93931 1.21806 1.00512 1.00012 0.96914 1.21537 0.99547 0.94390 0.97753 1.21563 0.93363 1.00089 0.97490 0.92941 0.90419 0.92892 0.92607 0.89253 0.90504 0.95065 0.94777 0.81403 0.94824 0.93561 0.93642 0.95045 0.95215 0.93213 0.93595 0.90350 0.89295 0.93435 0.89322 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.47 71.98 0.61 -2.12 16 2 C -0.05 -1.33 0.77 -52.18 -0.04 -1.37 16 3 C -0.09 -2.22 4.47 30.59 0.14 -2.08 16 4 C -0.08 -2.33 3.19 -10.79 -0.03 -2.36 16 5 C -0.11 -4.13 4.44 30.60 0.14 -4.00 16 6 C 0.20 8.27 0.89 3.62 0.00 8.27 16 7 N -0.75 -39.56 5.14 -303.26 -1.56 -41.12 16 8 C -0.30 -17.67 8.67 84.03 0.73 -16.94 16 9 H 0.06 3.49 6.69 -2.91 -0.02 3.47 16 10 C -0.11 -6.83 5.50 84.86 0.47 -6.36 16 11 N -0.98 -63.80 13.70 21.65 0.30 -63.50 16 12 Si 1.12 54.39 29.92 68.60 2.05 56.45 16 13 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 C -0.10 -3.44 3.87 30.61 0.12 -3.32 16 17 C -0.10 -3.69 3.72 30.59 0.11 -3.58 16 18 C -0.06 -1.61 0.77 -52.20 -0.04 -1.65 16 19 C -0.14 -3.19 8.47 71.98 0.61 -2.58 16 20 C -0.09 -2.42 4.47 30.59 0.14 -2.28 16 21 C -0.09 -2.08 3.75 30.58 0.11 -1.96 16 22 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.03 1.36 7.27 -2.39 -0.02 1.34 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.35 19.82 6.50 -92.71 -0.60 19.22 16 31 H 0.24 15.71 6.77 -92.70 -0.63 15.08 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.03 1.30 7.27 -2.39 -0.02 1.28 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -68.46 304.46 4.36 -64.10 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.51 Total: 26.41 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 3.06 Total: -42.34 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -1.26 Total: -104.62 kcal Atomic # 14 Polarization: 54.39 SS G_CDS: 2.05 Total: 56.45 kcal Total: -68.46 4.36 -64.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087039101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.474 kcal (2) G-P(sol) polarization free energy of solvation -68.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds