Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00072 * 2 1 4 4 H 1.48497 * 109.47111 * 85.30253 * 3 2 1 5 5 H 1.48494 * 109.47030 * 205.30520 * 3 2 1 6 6 H 1.48499 * 109.46928 * 325.30306 * 3 2 1 7 7 C 1.37879 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99935 * 187.96661 * 7 2 1 9 9 C 1.50700 * 119.99899 * 7.96409 * 7 2 1 10 10 C 1.52994 * 115.54753 * 176.12133 * 9 7 2 11 11 N 1.46905 * 109.47348 * 325.58433 * 10 9 7 12 12 C 1.48626 * 110.99833 * 288.87541 * 11 10 9 13 13 C 1.55337 * 106.99420 * 233.78703 * 12 11 10 14 14 C 1.53645 * 101.84875 * 337.43953 * 13 12 11 15 15 H 1.08999 * 111.65075 * 281.41509 * 14 13 12 16 16 C 1.51927 * 115.26005 * 153.57933 * 14 13 12 17 17 C 1.53704 * 107.27568 * 185.01405 * 16 14 13 18 18 C 1.52574 * 111.49672 * 58.10636 * 17 16 14 19 19 C 1.53771 * 111.38256 * 305.16102 * 18 17 16 20 20 C 1.45829 * 110.99982 * 170.00370 * 11 10 9 21 21 H 1.08993 * 109.25359 * 35.92478 * 20 11 10 22 22 C 1.53002 * 117.49608 * 30.45296 * 9 7 2 23 23 C 1.53000 * 117.50042 * 321.79436 * 9 7 2 24 24 H 0.96998 * 119.99649 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47209 * 85.58419 * 10 9 7 26 26 H 1.09006 * 109.47075 * 205.58450 * 10 9 7 27 27 H 1.08995 * 109.92902 * 353.11514 * 12 11 10 28 28 H 1.08997 * 109.92763 * 114.45084 * 12 11 10 29 29 H 1.08999 * 110.95321 * 219.30559 * 13 12 11 30 30 H 1.08998 * 110.99145 * 95.59532 * 13 12 11 31 31 H 1.09000 * 109.89644 * 65.56955 * 16 14 13 32 32 H 1.09003 * 109.89487 * 304.45468 * 16 14 13 33 33 H 1.09002 * 109.07753 * 297.58844 * 17 16 14 34 34 H 1.09001 * 109.07455 * 178.62280 * 17 16 14 35 35 H 1.09007 * 109.09884 * 184.67526 * 18 17 16 36 36 H 1.09003 * 109.09724 * 65.65064 * 18 17 16 37 37 H 1.08997 * 109.88315 * 297.82320 * 19 18 17 38 38 H 1.09003 * 109.94505 * 176.78003 * 19 18 17 39 39 H 1.08996 * 117.50183 * 359.97438 * 22 9 7 40 40 H 1.09006 * 117.49290 * 145.01925 * 22 9 7 41 41 H 1.08998 * 117.49815 * 214.98081 * 23 9 7 42 42 H 1.08996 * 117.49797 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3974 2.1038 1.3953 5 1 3.5928 1.4135 -0.5984 6 1 1.4998 2.6220 -0.7970 7 6 2.0046 -1.1941 0.0005 8 1 3.0767 -1.1985 0.1302 9 6 1.2619 -2.4929 -0.1797 10 6 2.1349 -3.7471 -0.2554 11 7 3.3981 -3.4244 -0.9323 12 6 3.1797 -3.1892 -2.3835 13 6 4.1526 -4.1289 -3.1473 14 6 5.2326 -4.3939 -2.0871 15 1 5.9262 -3.5574 -2.0018 16 6 5.9806 -5.7077 -2.2378 17 6 6.9151 -5.8427 -1.0250 18 6 6.1378 -5.7995 0.2872 19 6 5.2711 -4.5331 0.3841 20 6 4.3487 -4.5243 -0.8169 21 1 3.8105 -5.4709 -0.8639 22 6 -0.0119 -2.4666 -1.0268 23 6 -0.1060 -2.6239 0.4930 24 1 -0.4849 0.8401 -0.0004 25 1 2.3441 -4.1055 0.7525 26 1 1.6104 -4.5217 -0.8150 27 1 2.1494 -3.4273 -2.6476 28 1 3.3983 -2.1498 -2.6284 29 1 4.5757 -3.6278 -4.0178 30 1 3.6549 -5.0545 -3.4365 31 1 6.5655 -5.6981 -3.1575 32 1 5.2736 -6.5371 -2.2555 33 1 7.6367 -5.0258 -1.0385 34 1 7.4499 -6.7901 -1.0911 35 1 6.8417 -5.8143 1.1194 36 1 5.4947 -6.6774 0.3498 37 1 5.9061 -3.6473 0.3703 38 1 4.6839 -4.5536 1.3022 39 1 -0.3131 -1.5099 -1.4533 40 1 -0.2282 -3.3432 -1.6376 41 1 -0.3842 -3.6036 0.8813 42 1 -0.4686 -1.7707 1.0662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162676267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = 23.054995 kcal Electronic energy + Delta-G solvation = -19412.015620 eV Core-core repulsion = 16778.138445 eV Total energy + Delta-G solvation = -2633.877175 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85374 -36.76195 -34.95484 -32.15599 -31.31174 -29.24414 -28.08999 -25.66976 -24.48465 -22.43402 -20.98508 -20.57030 -20.30615 -19.55050 -18.62566 -15.88852 -15.36916 -14.89767 -14.84208 -14.29306 -14.17324 -13.51780 -13.33041 -13.14839 -12.75389 -12.58472 -12.07042 -11.81914 -11.68781 -11.04152 -11.02263 -10.94091 -10.84860 -10.69731 -10.48910 -10.45676 -10.35980 -10.10698 -10.01168 -9.86310 -9.63768 -9.29341 -8.67673 -8.20490 -7.90307 -7.41254 -5.81189 -3.80206 3.37363 3.44888 3.50825 4.41456 4.53964 4.74889 4.83908 5.06299 5.20725 5.21285 5.31678 5.40952 5.58954 5.64900 5.66311 5.71350 5.80830 5.91099 5.97977 6.01797 6.07143 6.18648 6.21233 6.27218 6.30143 6.40291 6.43125 6.49287 6.56717 6.62204 6.70445 6.82257 6.83877 7.13124 7.30690 7.36965 7.78034 7.79148 8.06140 8.20789 8.32112 8.74245 9.20496 9.72955 11.16396 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.006676 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.509312 B = 4193.249044 C = 4449.930144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.050 3.950 3 Si 0.891 3.109 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.290 1.290 7 C -0.443 4.443 8 H 0.074 0.926 9 C 0.025 3.975 10 C 0.100 3.900 11 N -0.494 5.494 12 C 0.057 3.943 13 C -0.137 4.137 14 C -0.098 4.098 15 H 0.084 0.916 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.071 3.929 21 H 0.031 0.969 22 C -0.194 4.194 23 C -0.191 4.191 24 H 0.254 0.746 25 H 0.056 0.944 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.264 -10.522 -3.555 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.150 4.150 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.198 1.198 6 H -0.216 1.216 7 C -0.480 4.480 8 H 0.092 0.908 9 C 0.025 3.975 10 C -0.028 4.028 11 N -0.217 5.217 12 C -0.070 4.070 13 C -0.176 4.176 14 C -0.117 4.117 15 H 0.102 0.898 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.039 4.039 21 H 0.049 0.951 22 C -0.231 4.231 23 C -0.230 4.230 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.312 -9.925 -3.302 14.689 hybrid contribution -0.202 0.133 -0.370 0.442 sum 10.110 -9.792 -3.672 14.546 Atomic orbital electron populations 1.70047 1.05789 1.25532 1.51342 1.25052 0.94837 0.99109 0.95976 0.86588 0.80067 0.83701 0.77686 1.21160 1.19801 1.21610 1.20643 0.94083 0.88069 1.45242 0.90821 1.18980 0.85316 0.93045 1.00199 1.21761 0.88765 0.95737 0.96525 1.63183 1.10203 1.37724 1.10581 1.23053 0.97572 0.99657 0.86719 1.22681 0.97123 0.99746 0.98031 1.22079 0.96610 0.97571 0.95396 0.89784 1.21440 0.98281 0.97165 0.97580 1.21525 0.98054 1.01253 0.94621 1.21543 0.98561 0.98268 0.97030 1.21243 0.97288 0.97430 0.97927 1.22031 0.93348 0.93230 0.95242 0.95068 1.22836 1.07390 0.99962 0.92959 1.22876 1.05494 0.98734 0.95889 0.93546 0.92512 0.97127 0.92875 0.90309 0.91419 0.92197 0.92131 0.92170 0.92158 0.92576 0.92171 0.92590 0.91254 0.91827 0.87588 0.94560 0.94474 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 8.66 55.43 0.48 -24.69 16 2 C 0.05 1.37 5.24 -17.82 -0.09 1.28 16 3 Si 0.89 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.44 -12.10 8.55 -34.44 -0.29 -12.39 16 8 H 0.07 2.04 7.31 -52.49 -0.38 1.66 16 9 C 0.03 0.64 1.95 -155.66 -0.30 0.33 16 10 C 0.10 2.14 4.67 -3.82 -0.02 2.12 16 11 N -0.49 -9.68 4.02 -223.97 -0.90 -10.58 16 12 C 0.06 1.06 6.35 -1.63 -0.01 1.05 16 13 C -0.14 -1.98 6.54 -25.16 -0.16 -2.14 16 14 C -0.10 -1.35 2.63 -89.61 -0.24 -1.59 16 15 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 16 C -0.11 -1.21 5.61 -26.91 -0.15 -1.36 16 17 C -0.12 -1.23 5.84 -26.58 -0.16 -1.38 16 18 C -0.12 -1.33 5.84 -26.55 -0.15 -1.48 16 19 C -0.10 -1.46 5.95 -27.12 -0.16 -1.62 16 20 C 0.07 1.13 1.72 -67.87 -0.12 1.01 16 21 H 0.03 0.51 7.56 -51.93 -0.39 0.12 16 22 C -0.19 -4.90 9.16 -26.69 -0.24 -5.14 16 23 C -0.19 -4.88 9.39 -26.69 -0.25 -5.13 16 24 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 26 H 0.01 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.05 1.04 7.27 -51.93 -0.38 0.66 16 28 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 2.96 6.27 -51.93 -0.33 2.63 16 40 H 0.04 0.84 8.05 -51.93 -0.42 0.43 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 3.13 6.32 -51.93 -0.33 2.80 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -27.90 315.42 -10.70 -38.60 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.66 Total: 1.75 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.35 Total: -26.45 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.42 Total: -35.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.90 -10.70 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.658 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds