Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00072 * 2 1 4 4 H 1.48497 * 109.47111 * 85.30253 * 3 2 1 5 5 H 1.48494 * 109.47030 * 205.30520 * 3 2 1 6 6 H 1.48499 * 109.46928 * 325.30306 * 3 2 1 7 7 C 1.37879 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99935 * 187.96661 * 7 2 1 9 9 C 1.50700 * 119.99899 * 7.96409 * 7 2 1 10 10 C 1.52994 * 115.54753 * 176.12133 * 9 7 2 11 11 N 1.46905 * 109.47348 * 325.58433 * 10 9 7 12 12 C 1.48626 * 110.99833 * 288.87541 * 11 10 9 13 13 C 1.55337 * 106.99420 * 233.78703 * 12 11 10 14 14 C 1.53645 * 101.84875 * 337.43953 * 13 12 11 15 15 H 1.08999 * 111.65075 * 281.41509 * 14 13 12 16 16 C 1.51927 * 115.26005 * 153.57933 * 14 13 12 17 17 C 1.53704 * 107.27568 * 185.01405 * 16 14 13 18 18 C 1.52574 * 111.49672 * 58.10636 * 17 16 14 19 19 C 1.53771 * 111.38256 * 305.16102 * 18 17 16 20 20 C 1.45829 * 110.99982 * 170.00370 * 11 10 9 21 21 H 1.08993 * 109.25359 * 35.92478 * 20 11 10 22 22 C 1.53002 * 117.49608 * 30.45296 * 9 7 2 23 23 C 1.53000 * 117.50042 * 321.79436 * 9 7 2 24 24 H 0.96998 * 119.99649 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47209 * 85.58419 * 10 9 7 26 26 H 1.09006 * 109.47075 * 205.58450 * 10 9 7 27 27 H 1.08995 * 109.92902 * 353.11514 * 12 11 10 28 28 H 1.08997 * 109.92763 * 114.45084 * 12 11 10 29 29 H 1.08999 * 110.95321 * 219.30559 * 13 12 11 30 30 H 1.08998 * 110.99145 * 95.59532 * 13 12 11 31 31 H 1.09000 * 109.89644 * 65.56955 * 16 14 13 32 32 H 1.09003 * 109.89487 * 304.45468 * 16 14 13 33 33 H 1.09002 * 109.07753 * 297.58844 * 17 16 14 34 34 H 1.09001 * 109.07455 * 178.62280 * 17 16 14 35 35 H 1.09007 * 109.09884 * 184.67526 * 18 17 16 36 36 H 1.09003 * 109.09724 * 65.65064 * 18 17 16 37 37 H 1.08997 * 109.88315 * 297.82320 * 19 18 17 38 38 H 1.09003 * 109.94505 * 176.78003 * 19 18 17 39 39 H 1.08996 * 117.50183 * 359.97438 * 22 9 7 40 40 H 1.09006 * 117.49290 * 145.01925 * 22 9 7 41 41 H 1.08998 * 117.49815 * 214.98081 * 23 9 7 42 42 H 1.08996 * 117.49797 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3974 2.1038 1.3953 5 1 3.5928 1.4135 -0.5984 6 1 1.4998 2.6220 -0.7970 7 6 2.0046 -1.1941 0.0005 8 1 3.0767 -1.1985 0.1302 9 6 1.2619 -2.4929 -0.1797 10 6 2.1349 -3.7471 -0.2554 11 7 3.3981 -3.4244 -0.9323 12 6 3.1797 -3.1892 -2.3835 13 6 4.1526 -4.1289 -3.1473 14 6 5.2326 -4.3939 -2.0871 15 1 5.9262 -3.5574 -2.0018 16 6 5.9806 -5.7077 -2.2378 17 6 6.9151 -5.8427 -1.0250 18 6 6.1378 -5.7995 0.2872 19 6 5.2711 -4.5331 0.3841 20 6 4.3487 -4.5243 -0.8169 21 1 3.8105 -5.4709 -0.8639 22 6 -0.0119 -2.4666 -1.0268 23 6 -0.1060 -2.6239 0.4930 24 1 -0.4849 0.8401 -0.0004 25 1 2.3441 -4.1055 0.7525 26 1 1.6104 -4.5217 -0.8150 27 1 2.1494 -3.4273 -2.6476 28 1 3.3983 -2.1498 -2.6284 29 1 4.5757 -3.6278 -4.0178 30 1 3.6549 -5.0545 -3.4365 31 1 6.5655 -5.6981 -3.1575 32 1 5.2736 -6.5371 -2.2555 33 1 7.6367 -5.0258 -1.0385 34 1 7.4499 -6.7901 -1.0911 35 1 6.8417 -5.8143 1.1194 36 1 5.4947 -6.6774 0.3498 37 1 5.9061 -3.6473 0.3703 38 1 4.6839 -4.5536 1.3022 39 1 -0.3131 -1.5099 -1.4533 40 1 -0.2282 -3.3432 -1.6376 41 1 -0.3842 -3.6036 0.8813 42 1 -0.4686 -1.7707 1.0662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162676267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = 9.437887 kcal Electronic energy + Delta-G solvation = -19412.606102 eV Core-core repulsion = 16778.138445 eV Total energy + Delta-G solvation = -2634.467657 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10871 -38.54954 -36.29145 -33.73447 -33.05186 -30.48587 -29.26193 -27.68481 -26.15878 -23.59550 -22.64775 -21.97199 -21.67166 -20.78590 -20.43322 -17.86967 -16.87317 -16.63285 -16.21950 -15.60356 -15.27414 -15.18431 -14.73207 -14.43479 -14.21836 -14.02368 -13.41832 -13.33839 -12.97863 -12.82376 -12.68032 -12.44013 -12.23261 -12.17190 -12.04732 -11.97259 -11.90956 -11.57411 -11.36358 -11.32047 -11.13940 -10.78847 -10.64925 -10.21952 -9.97324 -8.92757 -7.93636 -5.98423 1.41640 1.44210 1.55512 2.48807 3.02754 3.18339 3.62197 3.79903 3.93331 3.96947 4.17016 4.24058 4.36165 4.40548 4.51248 4.55025 4.57551 4.63002 4.65818 4.72174 4.79516 4.85120 4.94570 4.96359 5.04637 5.12247 5.17380 5.23825 5.28780 5.30372 5.34418 5.35843 5.39825 5.46672 5.50953 5.63234 5.70408 6.00584 6.19588 6.29761 6.51842 6.68169 7.05300 7.56976 9.01878 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.006676 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.509312 B = 4193.249044 C = 4449.930144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.289 1.289 7 C -0.455 4.455 8 H 0.064 0.936 9 C 0.019 3.981 10 C 0.111 3.889 11 N -0.515 5.515 12 C 0.055 3.945 13 C -0.126 4.126 14 C -0.089 4.089 15 H 0.076 0.924 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.101 4.101 20 C 0.066 3.934 21 H 0.032 0.968 22 C -0.189 4.189 23 C -0.194 4.194 24 H 0.253 0.747 25 H 0.056 0.944 26 H 0.017 0.983 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.217 -12.049 -4.233 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.215 1.215 7 C -0.492 4.492 8 H 0.082 0.918 9 C 0.018 3.982 10 C -0.017 4.017 11 N -0.238 5.238 12 C -0.072 4.072 13 C -0.164 4.164 14 C -0.108 4.108 15 H 0.094 0.906 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.043 4.043 21 H 0.050 0.950 22 C -0.227 4.227 23 C -0.233 4.233 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.276 -11.461 -3.980 17.259 hybrid contribution -0.843 0.635 -0.135 1.064 sum 11.433 -10.826 -4.114 16.274 Atomic orbital electron populations 1.70194 1.06805 1.25940 1.51896 1.25717 0.95610 1.02015 0.95945 0.85660 0.78914 0.80111 0.77597 1.20851 1.19488 1.21455 1.20812 0.93779 0.89409 1.45247 0.91765 1.19144 0.85557 0.93992 0.99495 1.21532 0.89271 0.93895 0.96967 1.63077 1.09821 1.39788 1.11145 1.22983 0.97857 0.99434 0.86964 1.22615 0.96261 0.99316 0.98206 1.22058 0.96084 0.99031 0.93665 0.90605 1.21428 0.98340 0.95263 0.98866 1.21526 0.97780 1.02546 0.93405 1.21509 0.98447 0.96408 0.98439 1.21263 0.97155 0.98849 0.96627 1.22153 0.93099 0.91830 0.97228 0.95010 1.22668 1.07765 0.99305 0.92940 1.22767 1.06100 0.98747 0.95665 0.93796 0.92537 0.96479 0.94512 0.92707 0.89731 0.90927 0.90287 0.91840 0.92026 0.90345 0.90831 0.92172 0.92313 0.93344 0.90446 0.92536 0.92180 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.73 8.66 21.45 0.19 -52.54 16 2 C 0.00 0.24 5.24 84.65 0.44 0.69 16 3 Si 0.95 45.14 29.55 68.60 2.03 47.16 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.45 -25.31 8.55 25.60 0.22 -25.10 16 8 H 0.06 3.63 7.31 -2.91 -0.02 3.61 16 9 C 0.02 0.96 1.95 -52.93 -0.10 0.85 16 10 C 0.11 4.76 4.67 86.30 0.40 5.16 16 11 N -0.52 -20.11 4.02 -862.52 -3.46 -23.58 16 12 C 0.06 2.03 6.35 86.77 0.55 2.58 16 13 C -0.13 -3.37 6.54 31.61 0.21 -3.16 16 14 C -0.09 -2.28 2.63 -10.14 -0.03 -2.30 16 15 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 16 C -0.10 -1.92 5.61 30.48 0.17 -1.74 16 17 C -0.12 -2.00 5.84 30.69 0.18 -1.82 16 18 C -0.11 -2.22 5.84 30.71 0.18 -2.04 16 19 C -0.10 -2.80 5.95 30.34 0.18 -2.62 16 20 C 0.07 2.01 1.72 45.39 0.08 2.09 16 21 H 0.03 0.98 7.56 -2.39 -0.02 0.96 16 22 C -0.19 -9.68 9.16 30.62 0.28 -9.40 16 23 C -0.19 -10.02 9.39 30.62 0.29 -9.73 16 24 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 26 H 0.02 0.70 7.66 -2.38 -0.02 0.68 16 27 H 0.04 1.44 7.27 -2.39 -0.02 1.42 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.19 7.97 -2.39 -0.02 1.17 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.73 8.11 -2.39 -0.02 1.71 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 4.44 6.27 -2.39 -0.01 4.42 16 40 H 0.06 2.62 8.05 -2.38 -0.02 2.60 16 41 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 4.78 6.32 -2.39 -0.02 4.77 16 Total: -1.00 -60.41 315.42 2.75 -57.65 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.95 Total: 17.85 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 3.05 Total: -46.54 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -3.28 Total: -76.12 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -60.41 2.75 -57.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.092 kcal (2) G-P(sol) polarization free energy of solvation -60.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds