Wall clock time and date at job start Mon Mar 30 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00231 * 2 1 4 4 H 1.48496 * 109.47262 * 274.52240 * 3 2 1 5 5 H 1.48505 * 109.47046 * 34.52019 * 3 2 1 6 6 H 1.48501 * 109.47293 * 154.51819 * 3 2 1 7 7 C 1.37881 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99991 * 353.90591 * 7 2 1 9 9 C 1.50703 * 119.99726 * 173.91348 * 7 2 1 10 10 C 1.52999 * 115.55132 * 94.21269 * 9 7 2 11 11 N 1.46903 * 109.47090 * 40.11291 * 10 9 7 12 12 C 1.49252 * 110.99938 * 277.69556 * 11 10 9 13 13 C 1.55053 * 102.72713 * 198.55714 * 12 11 10 14 14 C 1.55876 * 103.06601 * 36.40205 * 13 12 11 15 15 H 1.09000 * 109.27027 * 100.14396 * 14 13 12 16 16 C 1.51622 * 107.35838 * 219.01799 * 14 13 12 17 17 C 1.52227 * 112.69898 * 152.14216 * 16 14 13 18 18 C 1.53415 * 108.15248 * 301.21212 * 17 16 14 19 19 C 1.52540 * 107.68798 * 68.11368 * 18 17 16 20 20 C 1.47391 * 111.00123 * 162.88366 * 11 10 9 21 21 H 1.08998 * 104.32385 * 40.55707 * 20 11 10 22 22 C 1.52999 * 117.51401 * 239.91375 * 9 7 2 23 23 C 1.53001 * 117.49829 * 308.54137 * 9 7 2 24 24 H 0.96997 * 119.99678 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46956 * 280.11206 * 10 9 7 26 26 H 1.09000 * 109.46773 * 160.10838 * 10 9 7 27 27 H 1.09003 * 110.75748 * 316.87003 * 12 11 10 28 28 H 1.09003 * 110.75587 * 80.24608 * 12 11 10 29 29 H 1.09002 * 110.68278 * 154.87214 * 13 12 11 30 30 H 1.09002 * 110.68520 * 277.86925 * 13 12 11 31 31 H 1.09002 * 108.82019 * 31.34507 * 16 14 13 32 32 H 1.08998 * 108.81986 * 272.94009 * 16 14 13 33 33 H 1.08999 * 109.73065 * 60.87548 * 17 16 14 34 34 H 1.09007 * 109.72620 * 181.50383 * 17 16 14 35 35 H 1.09004 * 109.81713 * 187.66357 * 18 17 16 36 36 H 1.09000 * 109.81481 * 308.50330 * 18 17 16 37 37 H 1.09000 * 108.74020 * 66.13895 * 19 18 17 38 38 H 1.08994 * 108.74330 * 184.22506 * 19 18 17 39 39 H 1.09003 * 117.49626 * 214.96921 * 22 9 7 40 40 H 1.08995 * 117.50219 * 359.97438 * 22 9 7 41 41 H 1.08998 * 117.49618 * 359.97438 * 23 9 7 42 42 H 1.08995 * 117.49827 * 145.00012 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4011 2.1015 -1.3957 5 1 1.4977 2.6231 0.7934 6 1 3.5913 1.4144 0.6023 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1267 0.1002 9 6 3.5052 -1.1979 -0.1379 10 6 4.2889 -1.2272 1.1758 11 7 3.6263 -2.1355 2.1212 12 6 2.4944 -1.4531 2.8146 13 6 2.2597 -2.3546 4.0541 14 6 3.7019 -2.7977 4.4457 15 1 4.0521 -2.1875 5.2783 16 6 3.6284 -4.2505 4.8731 17 6 4.9328 -4.9990 4.6371 18 6 5.2646 -4.9211 3.1413 19 6 5.6064 -3.4702 2.8174 20 6 4.5350 -2.5094 3.2198 21 1 5.0600 -1.5853 3.4618 22 6 4.1028 -1.9417 -1.3339 23 6 4.1091 -0.4120 -1.3034 24 1 -0.4849 0.8400 -0.0004 25 1 4.3245 -0.2238 1.6001 26 1 5.3035 -1.5775 0.9858 27 1 2.7783 -0.4454 3.1178 28 1 1.6089 -1.4315 2.1792 29 1 1.7973 -1.7865 4.8613 30 1 1.6470 -3.2173 3.7923 31 1 2.8341 -4.7425 4.3117 32 1 3.3859 -4.2928 5.9350 33 1 5.7323 -4.5366 5.2159 34 1 4.8181 -6.0412 4.9354 35 1 6.1188 -5.5605 2.9185 36 1 4.4026 -5.2385 2.5545 37 1 6.5280 -3.2036 3.3347 38 1 5.7718 -3.3806 1.7438 39 1 5.0545 -2.4519 -1.1848 40 1 3.4107 -2.4288 -2.0206 41 1 3.4210 0.1074 -1.9704 42 1 5.0647 0.0841 -1.1344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162676479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:09 Heat of formation + Delta-G solvation = 24.275039 kcal Electronic energy + Delta-G solvation = -19708.926833 eV Core-core repulsion = 17075.102564 eV Total energy + Delta-G solvation = -2633.824270 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77226 -36.97517 -34.84058 -32.43771 -31.99203 -29.32594 -27.91944 -25.77710 -24.59404 -22.29006 -21.61399 -21.43724 -20.50978 -18.82544 -18.03961 -16.28582 -15.72127 -14.98107 -14.65729 -14.40178 -13.97928 -13.81201 -13.45276 -13.08971 -12.77435 -12.56009 -12.41775 -11.94975 -11.76517 -11.45645 -11.16061 -11.08225 -10.76844 -10.69998 -10.45348 -10.35925 -10.23307 -10.03279 -9.94700 -9.80963 -9.75111 -9.42516 -8.87681 -8.48979 -8.33607 -7.44896 -6.03686 -3.98432 3.30622 3.40817 3.45921 4.47554 4.51512 4.82644 4.95188 4.98745 5.15105 5.27384 5.33985 5.46757 5.50118 5.63609 5.73229 5.78713 5.83745 5.91776 6.00717 6.09861 6.11780 6.13791 6.18724 6.25465 6.29372 6.37724 6.40403 6.44529 6.53229 6.56431 6.59312 6.66148 6.70123 6.79574 6.83313 7.11032 7.21508 7.29321 7.83059 7.85373 8.00669 8.65448 9.03966 9.60592 11.07922 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027547 B = 0.008003 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.184397 B = 3498.054297 C = 4004.078182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.073 3.927 3 Si 0.872 3.128 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.016 3.984 10 C 0.083 3.917 11 N -0.479 5.479 12 C 0.036 3.964 13 C -0.124 4.124 14 C -0.081 4.081 15 H 0.062 0.938 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.098 4.098 20 C 0.075 3.925 21 H 0.007 0.993 22 C -0.176 4.176 23 C -0.210 4.210 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.026 0.974 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -5.904 8.313 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.100 0.900 9 C 0.015 3.985 10 C -0.045 4.045 11 N -0.203 5.203 12 C -0.091 4.091 13 C -0.162 4.162 14 C -0.100 4.100 15 H 0.081 0.919 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.136 4.136 20 C -0.034 4.034 21 H 0.025 0.975 22 C -0.214 4.214 23 C -0.248 4.248 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.143 0.857 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.132 -6.216 8.004 13.641 hybrid contribution 0.843 1.996 0.386 2.201 sum 9.975 -4.220 8.390 13.700 Atomic orbital electron populations 1.69905 1.06100 1.26704 1.51190 1.24937 0.94490 0.98497 0.94882 0.86986 0.80701 0.84177 0.78028 1.20835 1.22471 1.18608 1.20178 0.86730 0.94347 1.48458 0.89950 1.19310 0.95587 0.98343 0.85306 1.22002 0.95200 0.93117 0.94196 1.64796 1.06532 1.37584 1.11379 1.23660 0.97932 0.93273 0.94212 1.23056 0.95209 1.00254 0.97686 1.21113 0.96471 0.96421 0.96037 0.91907 1.21173 0.97950 0.94910 1.00275 1.21464 0.97722 0.99449 0.96864 1.21453 1.01349 0.96169 0.96009 1.20601 0.96365 0.94752 1.01846 1.20733 0.93831 0.96982 0.91893 0.97471 1.22812 1.00766 0.92818 1.04962 1.22951 1.01139 0.94586 1.06125 0.92822 0.95495 0.93433 0.95600 0.85734 0.92330 0.90794 0.91625 0.92887 0.92544 0.92413 0.92635 0.91053 0.93054 0.91323 0.91341 0.89753 0.89610 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.07 2.02 5.13 -17.82 -0.09 1.93 16 3 Si 0.87 21.69 24.88 -169.99 -4.23 17.46 16 4 H -0.28 -6.99 7.09 56.52 0.40 -6.59 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.26 -6.26 5.56 56.52 0.31 -5.95 16 7 C -0.46 -12.31 6.22 -34.44 -0.21 -12.52 16 8 H 0.08 2.46 8.02 -52.49 -0.42 2.04 16 9 C 0.02 0.37 1.23 -155.66 -0.19 0.17 16 10 C 0.08 1.75 4.68 -3.82 -0.02 1.74 16 11 N -0.48 -9.59 4.88 -226.23 -1.10 -10.69 16 12 C 0.04 0.75 5.71 -1.43 -0.01 0.74 16 13 C -0.12 -2.06 6.55 -24.11 -0.16 -2.22 16 14 C -0.08 -1.21 3.20 -90.79 -0.29 -1.50 16 15 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 16 C -0.11 -1.35 5.25 -27.82 -0.15 -1.50 16 17 C -0.12 -1.36 5.96 -26.91 -0.16 -1.52 16 18 C -0.11 -1.44 6.05 -26.75 -0.16 -1.61 16 19 C -0.10 -1.42 5.34 -28.73 -0.15 -1.57 16 20 C 0.07 1.24 2.05 -70.21 -0.14 1.10 16 21 H 0.01 0.12 7.59 -51.93 -0.39 -0.27 16 22 C -0.18 -3.70 9.88 -26.73 -0.26 -3.96 16 23 C -0.21 -4.59 7.42 -26.73 -0.20 -4.79 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.60 6.33 -51.93 -0.33 0.27 16 26 H 0.05 0.92 6.54 -51.93 -0.34 0.58 16 27 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 28 H 0.12 3.03 5.61 -51.93 -0.29 2.74 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.24 7.22 -51.93 -0.38 0.86 16 31 H 0.07 0.90 7.20 -51.93 -0.37 0.52 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.08 6.80 -51.93 -0.35 0.72 16 39 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.98 6.78 -51.93 -0.35 1.63 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -27.97 305.74 -9.65 -37.62 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.50 Total: 2.34 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -2.20 Total: -25.52 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.33 Total: -36.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.23 Total: 17.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.97 -9.65 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.896 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds