Wall clock time and date at job start Mon Mar 30 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00231 * 2 1 4 4 H 1.48496 * 109.47262 * 274.52240 * 3 2 1 5 5 H 1.48505 * 109.47046 * 34.52019 * 3 2 1 6 6 H 1.48501 * 109.47293 * 154.51819 * 3 2 1 7 7 C 1.37881 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99991 * 353.90591 * 7 2 1 9 9 C 1.50703 * 119.99726 * 173.91348 * 7 2 1 10 10 C 1.52999 * 115.55132 * 94.21269 * 9 7 2 11 11 N 1.46903 * 109.47090 * 40.11291 * 10 9 7 12 12 C 1.49252 * 110.99938 * 277.69556 * 11 10 9 13 13 C 1.55053 * 102.72713 * 198.55714 * 12 11 10 14 14 C 1.55876 * 103.06601 * 36.40205 * 13 12 11 15 15 H 1.09000 * 109.27027 * 100.14396 * 14 13 12 16 16 C 1.51622 * 107.35838 * 219.01799 * 14 13 12 17 17 C 1.52227 * 112.69898 * 152.14216 * 16 14 13 18 18 C 1.53415 * 108.15248 * 301.21212 * 17 16 14 19 19 C 1.52540 * 107.68798 * 68.11368 * 18 17 16 20 20 C 1.47391 * 111.00123 * 162.88366 * 11 10 9 21 21 H 1.08998 * 104.32385 * 40.55707 * 20 11 10 22 22 C 1.52999 * 117.51401 * 239.91375 * 9 7 2 23 23 C 1.53001 * 117.49829 * 308.54137 * 9 7 2 24 24 H 0.96997 * 119.99678 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46956 * 280.11206 * 10 9 7 26 26 H 1.09000 * 109.46773 * 160.10838 * 10 9 7 27 27 H 1.09003 * 110.75748 * 316.87003 * 12 11 10 28 28 H 1.09003 * 110.75587 * 80.24608 * 12 11 10 29 29 H 1.09002 * 110.68278 * 154.87214 * 13 12 11 30 30 H 1.09002 * 110.68520 * 277.86925 * 13 12 11 31 31 H 1.09002 * 108.82019 * 31.34507 * 16 14 13 32 32 H 1.08998 * 108.81986 * 272.94009 * 16 14 13 33 33 H 1.08999 * 109.73065 * 60.87548 * 17 16 14 34 34 H 1.09007 * 109.72620 * 181.50383 * 17 16 14 35 35 H 1.09004 * 109.81713 * 187.66357 * 18 17 16 36 36 H 1.09000 * 109.81481 * 308.50330 * 18 17 16 37 37 H 1.09000 * 108.74020 * 66.13895 * 19 18 17 38 38 H 1.08994 * 108.74330 * 184.22506 * 19 18 17 39 39 H 1.09003 * 117.49626 * 214.96921 * 22 9 7 40 40 H 1.08995 * 117.50219 * 359.97438 * 22 9 7 41 41 H 1.08998 * 117.49618 * 359.97438 * 23 9 7 42 42 H 1.08995 * 117.49827 * 145.00012 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4011 2.1015 -1.3957 5 1 1.4977 2.6231 0.7934 6 1 3.5913 1.4144 0.6023 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1267 0.1002 9 6 3.5052 -1.1979 -0.1379 10 6 4.2889 -1.2272 1.1758 11 7 3.6263 -2.1355 2.1212 12 6 2.4944 -1.4531 2.8146 13 6 2.2597 -2.3546 4.0541 14 6 3.7019 -2.7977 4.4457 15 1 4.0521 -2.1875 5.2783 16 6 3.6284 -4.2505 4.8731 17 6 4.9328 -4.9990 4.6371 18 6 5.2646 -4.9211 3.1413 19 6 5.6064 -3.4702 2.8174 20 6 4.5350 -2.5094 3.2198 21 1 5.0600 -1.5853 3.4618 22 6 4.1028 -1.9417 -1.3339 23 6 4.1091 -0.4120 -1.3034 24 1 -0.4849 0.8400 -0.0004 25 1 4.3245 -0.2238 1.6001 26 1 5.3035 -1.5775 0.9858 27 1 2.7783 -0.4454 3.1178 28 1 1.6089 -1.4315 2.1792 29 1 1.7973 -1.7865 4.8613 30 1 1.6470 -3.2173 3.7923 31 1 2.8341 -4.7425 4.3117 32 1 3.3859 -4.2928 5.9350 33 1 5.7323 -4.5366 5.2159 34 1 4.8181 -6.0412 4.9354 35 1 6.1188 -5.5605 2.9185 36 1 4.4026 -5.2385 2.5545 37 1 6.5280 -3.2036 3.3347 38 1 5.7718 -3.3806 1.7438 39 1 5.0545 -2.4519 -1.1848 40 1 3.4107 -2.4288 -2.0206 41 1 3.4210 0.1074 -1.9704 42 1 5.0647 0.0841 -1.1344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162676479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:09 Heat of formation + Delta-G solvation = 7.799069 kcal Electronic energy + Delta-G solvation = -19709.641285 eV Core-core repulsion = 17075.102564 eV Total energy + Delta-G solvation = -2634.538722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11825 -38.65261 -36.14069 -34.21842 -33.63086 -30.60397 -29.25496 -27.75298 -26.22171 -23.45366 -23.29609 -22.69154 -21.95476 -20.70958 -19.23991 -18.19631 -17.18620 -16.71308 -16.16809 -15.78282 -15.56686 -14.95070 -14.91791 -14.66106 -14.48884 -14.16943 -13.98295 -13.25849 -13.10330 -12.94339 -12.87707 -12.42799 -12.36974 -12.17992 -12.02716 -11.88886 -11.81876 -11.60427 -11.38676 -11.20859 -10.92390 -10.88515 -10.73871 -10.55038 -10.16922 -9.03138 -8.21468 -6.17491 1.30014 1.34896 1.45398 2.38532 2.99395 3.12891 3.41191 3.64974 3.75619 3.93144 4.15999 4.21489 4.26468 4.34481 4.42716 4.47097 4.50536 4.55910 4.61560 4.62096 4.73865 4.81115 4.85097 4.90783 4.96910 4.98634 5.09246 5.11967 5.14186 5.25613 5.34317 5.36510 5.41214 5.47664 5.48791 5.54832 5.57034 5.66302 5.81600 6.26005 6.38870 6.54327 6.84709 7.43184 8.94324 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027547 B = 0.008003 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.184397 B = 3498.054297 C = 4004.078182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.025 3.975 3 Si 0.923 3.077 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.035 0.965 9 C -0.013 4.013 10 C 0.092 3.908 11 N -0.495 5.495 12 C 0.036 3.964 13 C -0.118 4.118 14 C -0.076 4.076 15 H 0.080 0.920 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.098 4.098 20 C 0.074 3.926 21 H 0.002 0.998 22 C -0.160 4.160 23 C -0.205 4.205 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.657 -6.473 9.655 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.171 4.171 3 Si 0.750 3.250 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.166 1.166 7 C -0.480 4.480 8 H 0.053 0.947 9 C -0.015 4.015 10 C -0.037 4.037 11 N -0.219 5.219 12 C -0.091 4.091 13 C -0.156 4.156 14 C -0.095 4.095 15 H 0.098 0.902 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.135 4.135 20 C -0.034 4.034 21 H 0.020 0.980 22 C -0.197 4.197 23 C -0.242 4.242 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.357 -6.802 9.344 16.920 hybrid contribution -0.203 2.075 -0.057 2.086 sum 12.155 -4.727 9.287 16.010 Atomic orbital electron populations 1.70039 1.07838 1.27288 1.53796 1.25548 0.94929 1.01550 0.95085 0.86146 0.80291 0.80337 0.78181 1.20233 1.23076 1.16635 1.20141 0.88955 0.92264 1.46602 0.94719 1.19334 0.93584 1.01198 0.87346 1.21855 0.95940 0.92837 0.93055 1.64733 1.07300 1.37053 1.12797 1.23406 0.96586 0.93948 0.95189 1.23011 0.97003 0.99308 0.96326 1.21149 0.94261 0.98304 0.95802 0.90196 1.21154 0.98517 0.93263 1.01227 1.21450 0.97146 1.00458 0.95878 1.21440 1.01253 0.95326 0.96801 1.20627 0.96326 0.95307 1.01279 1.20920 0.93724 0.97528 0.91250 0.98000 1.22833 1.01557 0.92673 1.02685 1.22974 1.01760 0.95162 1.04337 0.93040 0.96822 0.91005 0.96516 0.90506 0.90748 0.91560 0.93121 0.90827 0.91110 0.90646 0.90575 0.93340 0.90773 0.92606 0.88124 0.90898 0.91242 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 2 C 0.03 1.45 5.13 84.65 0.43 1.88 16 3 Si 0.92 45.28 24.88 68.60 1.71 46.99 16 4 H -0.28 -13.22 7.09 99.48 0.71 -12.52 16 5 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 6 H -0.24 -11.08 5.56 99.48 0.55 -10.53 16 7 C -0.44 -24.61 6.22 25.60 0.16 -24.45 16 8 H 0.03 2.22 8.02 -2.91 -0.02 2.19 16 9 C -0.01 -0.62 1.23 -52.93 -0.07 -0.68 16 10 C 0.09 3.75 4.68 86.30 0.40 4.15 16 11 N -0.50 -19.72 4.88 -869.65 -4.24 -23.96 16 12 C 0.04 1.54 5.71 86.55 0.49 2.04 16 13 C -0.12 -3.92 6.55 32.29 0.21 -3.71 16 14 C -0.08 -2.10 3.20 -10.90 -0.03 -2.14 16 15 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.10 -2.37 5.25 29.89 0.16 -2.21 16 17 C -0.11 -2.16 5.96 30.48 0.18 -1.98 16 18 C -0.11 -2.52 6.05 30.58 0.19 -2.33 16 19 C -0.10 -2.54 5.34 29.30 0.16 -2.38 16 20 C 0.07 2.32 2.05 43.03 0.09 2.41 16 21 H 0.00 0.06 7.59 -2.39 -0.02 0.04 16 22 C -0.16 -6.45 9.88 30.59 0.30 -6.15 16 23 C -0.20 -8.52 7.42 30.59 0.23 -8.30 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.01 0.59 6.33 -2.39 -0.02 0.58 16 26 H 0.07 2.57 6.54 -2.39 -0.02 2.55 16 27 H 0.02 0.72 7.75 -2.39 -0.02 0.70 16 28 H 0.08 3.99 5.61 -2.39 -0.01 3.98 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.27 7.22 -2.39 -0.02 2.25 16 31 H 0.05 1.31 7.20 -2.39 -0.02 1.29 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 1.59 6.80 -2.39 -0.02 1.58 16 39 H 0.10 3.42 8.09 -2.39 -0.02 3.40 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.07 3.12 6.78 -2.39 -0.02 3.11 16 42 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -63.21 305.74 1.48 -61.73 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.81 Total: 17.63 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 2.90 Total: -43.85 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.94 Total: -82.50 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.71 Total: 46.99 kcal Total: -63.21 1.48 -61.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.527 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds