Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47110 * 299.99801 * 3 2 1 6 6 H 1.48506 * 109.47030 * 59.99946 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54849 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47254 * 34.32885 * 10 9 7 12 12 C 1.49093 * 110.99718 * 54.50926 * 11 10 9 13 13 C 1.55003 * 106.83795 * 145.35517 * 12 11 10 14 14 C 1.52950 * 103.96112 * 2.39615 * 13 12 11 15 15 H 1.08991 * 110.89808 * 89.73611 * 14 13 12 16 16 C 1.51763 * 116.00536 * 216.56633 * 14 13 12 17 17 C 1.53734 * 107.26569 * 177.34392 * 16 14 13 18 18 C 1.52561 * 111.47727 * 302.23232 * 17 16 14 19 19 C 1.53754 * 111.45016 * 54.73960 * 18 17 16 20 20 C 1.46659 * 111.00136 * 169.99733 * 11 10 9 21 21 H 1.08998 * 109.89239 * 314.35111 * 20 11 10 22 22 C 1.53001 * 117.51716 * 325.70199 * 9 7 2 23 23 C 1.52994 * 117.49847 * 34.32880 * 9 7 2 24 24 H 0.96996 * 119.99674 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 274.32881 * 10 9 7 26 26 H 1.09001 * 109.46832 * 154.33072 * 10 9 7 27 27 H 1.08996 * 109.98856 * 264.69514 * 12 11 10 28 28 H 1.09003 * 109.98982 * 26.00898 * 12 11 10 29 29 H 1.09003 * 110.52607 * 243.77562 * 13 12 11 30 30 H 1.08996 * 110.65132 * 121.07627 * 13 12 11 31 31 H 1.09002 * 109.89829 * 57.90237 * 16 14 13 32 32 H 1.09001 * 109.95856 * 296.81971 * 16 14 13 33 33 H 1.09004 * 109.07883 * 181.70979 * 17 16 14 34 34 H 1.09009 * 109.07649 * 62.74613 * 17 16 14 35 35 H 1.08998 * 109.08114 * 294.23194 * 18 17 16 36 36 H 1.09001 * 109.03067 * 175.21439 * 18 17 16 37 37 H 1.08998 * 109.88929 * 182.96645 * 19 18 17 38 38 H 1.09001 * 109.88896 * 61.86853 * 19 18 17 39 39 H 1.08997 * 117.49845 * 214.96930 * 22 9 7 40 40 H 1.08999 * 117.50024 * 359.97438 * 22 9 7 41 41 H 1.09008 * 117.50231 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49790 * 144.97233 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.1167 -3.7608 0.0028 11 7 3.3368 -3.5169 0.7837 12 6 3.0059 -3.0346 2.1551 13 6 4.0788 -3.6206 3.1081 14 6 5.0242 -4.3808 2.1765 15 1 5.8240 -3.7318 1.8203 16 6 5.5998 -5.6741 2.7236 17 6 6.4572 -6.2986 1.6108 18 6 5.6394 -6.5435 0.3464 19 6 4.9455 -5.2576 -0.1322 20 6 4.0759 -4.7637 1.0071 21 1 3.3893 -5.5513 1.3177 22 6 -0.0728 -2.5504 0.7669 23 6 -0.0729 -2.5511 -0.7631 24 1 -0.4849 0.8400 -0.0004 25 1 2.3862 -4.0174 -1.0217 26 1 1.5584 -4.5840 0.4487 27 1 3.0365 -1.9455 2.1846 28 1 2.0166 -3.3879 2.4457 29 1 3.6213 -4.3008 3.8266 30 1 4.6114 -2.8222 3.6247 31 1 4.7923 -6.3539 2.9954 32 1 6.2188 -5.4660 3.5963 33 1 6.8618 -7.2475 1.9629 34 1 7.2823 -5.6258 1.3767 35 1 4.8832 -7.3011 0.5523 36 1 6.3012 -6.9054 -0.4404 37 1 4.3277 -5.4722 -1.0042 38 1 5.6924 -4.5042 -0.3822 39 1 -0.3272 -3.4829 1.2706 40 1 -0.3989 -1.6401 1.2700 41 1 -0.3994 -1.6412 -1.2668 42 1 -0.3272 -3.4840 -1.2662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162676616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = 22.478118 kcal Electronic energy + Delta-G solvation = -19452.952254 eV Core-core repulsion = 16819.050064 eV Total energy + Delta-G solvation = -2633.902190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80942 -36.83959 -34.85991 -32.21440 -31.33650 -29.23705 -28.03072 -25.69138 -24.51838 -22.36198 -20.95511 -20.59920 -20.18400 -19.68121 -18.51126 -15.96109 -15.09996 -14.93767 -14.84852 -14.38758 -14.18491 -13.62048 -13.25301 -13.16923 -12.82558 -12.51787 -11.98126 -11.77465 -11.65228 -11.10884 -11.01107 -10.95199 -10.81115 -10.66017 -10.50964 -10.41328 -10.28143 -10.10558 -9.95873 -9.87527 -9.63524 -9.25418 -8.68309 -8.27637 -7.95265 -7.50612 -5.84831 -3.86387 3.33788 3.42605 3.48340 4.46180 4.50799 4.77453 4.87096 5.09050 5.18309 5.25313 5.39818 5.44480 5.57264 5.66380 5.69595 5.75855 5.80646 5.91584 6.02347 6.04775 6.14015 6.18990 6.22249 6.27892 6.31064 6.40396 6.44989 6.50345 6.61919 6.69331 6.75298 6.79212 7.01403 7.12126 7.26925 7.36747 7.71532 7.77581 8.02854 8.17568 8.29219 8.67826 9.14634 9.67534 11.12011 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.006651 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.786424 B = 4208.718922 C = 4543.501152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.050 3.950 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.449 4.449 8 H 0.076 0.924 9 C 0.020 3.980 10 C 0.094 3.906 11 N -0.484 5.484 12 C 0.051 3.949 13 C -0.128 4.128 14 C -0.091 4.091 15 H 0.080 0.920 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.101 4.101 20 C 0.059 3.941 21 H 0.036 0.964 22 C -0.192 4.192 23 C -0.190 4.190 24 H 0.255 0.745 25 H 0.059 0.941 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -10.602 4.032 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.487 4.487 8 H 0.094 0.906 9 C 0.020 3.980 10 C -0.034 4.034 11 N -0.207 5.207 12 C -0.076 4.076 13 C -0.167 4.167 14 C -0.110 4.110 15 H 0.098 0.902 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.139 4.139 20 C -0.051 4.051 21 H 0.054 0.946 22 C -0.230 4.230 23 C -0.228 4.228 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.561 -10.069 3.719 14.374 hybrid contribution -0.406 0.235 0.375 0.600 sum 9.155 -9.834 4.094 14.046 Atomic orbital electron populations 1.70043 1.05771 1.25508 1.51275 1.25065 0.94898 0.99157 0.95839 0.86518 0.80301 0.83838 0.77269 1.19629 1.21364 1.21385 1.20736 0.93447 0.87860 1.46613 0.90632 1.19015 0.85506 0.92859 1.00651 1.21764 0.89276 0.95844 0.96481 1.64646 1.20161 1.22719 1.13191 1.23126 0.95593 1.02275 0.86619 1.22319 0.97396 0.99243 0.97701 1.21782 0.97618 0.95745 0.95900 0.90160 1.21432 0.99125 0.96516 0.97469 1.21529 0.98374 1.00225 0.95284 1.21526 0.98980 0.97834 0.97044 1.21278 0.98593 0.96540 0.97512 1.22397 0.94881 0.92445 0.95328 0.94635 1.22878 1.06416 0.99313 0.94390 1.22801 1.05990 0.99607 0.94415 0.93506 0.92238 0.97210 0.88825 0.94003 0.92438 0.91596 0.92200 0.92117 0.92578 0.92173 0.92581 0.92241 0.92124 0.91172 0.94647 0.87328 0.87174 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.85 8.59 55.43 0.48 -24.38 16 2 C 0.05 1.37 5.28 -17.82 -0.09 1.27 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.45 -12.07 7.21 -34.44 -0.25 -12.32 16 8 H 0.08 2.06 7.12 -52.49 -0.37 1.69 16 9 C 0.02 0.50 1.63 -155.66 -0.25 0.25 16 10 C 0.09 2.02 5.06 -3.83 -0.02 2.00 16 11 N -0.48 -9.53 4.37 -223.01 -0.98 -10.51 16 12 C 0.05 0.99 5.42 -1.55 -0.01 0.98 16 13 C -0.13 -1.95 6.61 -25.70 -0.17 -2.12 16 14 C -0.09 -1.30 2.54 -90.03 -0.23 -1.53 16 15 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 16 C -0.11 -1.24 5.61 -26.98 -0.15 -1.39 16 17 C -0.12 -1.23 5.84 -26.57 -0.16 -1.38 16 18 C -0.12 -1.31 5.85 -26.56 -0.16 -1.46 16 19 C -0.10 -1.43 5.90 -27.05 -0.16 -1.59 16 20 C 0.06 0.94 1.63 -67.31 -0.11 0.83 16 21 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 22 C -0.19 -4.83 8.96 -26.73 -0.24 -5.07 16 23 C -0.19 -4.82 9.38 -26.74 -0.25 -5.07 16 24 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.01 0.21 7.64 -51.93 -0.40 -0.19 16 27 H 0.09 2.03 7.00 -51.93 -0.36 1.66 16 28 H 0.04 0.85 7.33 -51.93 -0.38 0.47 16 29 H 0.06 0.80 8.05 -51.93 -0.42 0.39 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.02 8.06 -51.93 -0.42 0.61 16 39 H 0.04 0.82 8.05 -51.93 -0.42 0.41 16 40 H 0.11 3.01 6.29 -51.93 -0.33 2.68 16 41 H 0.11 3.07 6.28 -51.92 -0.33 2.75 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -27.39 311.97 -10.66 -38.06 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.60 Total: 2.37 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -2.25 Total: -26.60 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.50 Total: -34.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.39 -10.66 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.535 kcal (2) G-P(sol) polarization free energy of solvation -27.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds