Wall clock time and date at job start Mon Mar 30 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47110 * 299.99801 * 3 2 1 6 6 H 1.48506 * 109.47030 * 59.99946 * 3 2 1 7 7 C 1.37877 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54849 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47254 * 34.32885 * 10 9 7 12 12 C 1.49093 * 110.99718 * 54.50926 * 11 10 9 13 13 C 1.55003 * 106.83795 * 145.35517 * 12 11 10 14 14 C 1.52950 * 103.96112 * 2.39615 * 13 12 11 15 15 H 1.08991 * 110.89808 * 89.73611 * 14 13 12 16 16 C 1.51763 * 116.00536 * 216.56633 * 14 13 12 17 17 C 1.53734 * 107.26569 * 177.34392 * 16 14 13 18 18 C 1.52561 * 111.47727 * 302.23232 * 17 16 14 19 19 C 1.53754 * 111.45016 * 54.73960 * 18 17 16 20 20 C 1.46659 * 111.00136 * 169.99733 * 11 10 9 21 21 H 1.08998 * 109.89239 * 314.35111 * 20 11 10 22 22 C 1.53001 * 117.51716 * 325.70199 * 9 7 2 23 23 C 1.52994 * 117.49847 * 34.32880 * 9 7 2 24 24 H 0.96996 * 119.99674 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 274.32881 * 10 9 7 26 26 H 1.09001 * 109.46832 * 154.33072 * 10 9 7 27 27 H 1.08996 * 109.98856 * 264.69514 * 12 11 10 28 28 H 1.09003 * 109.98982 * 26.00898 * 12 11 10 29 29 H 1.09003 * 110.52607 * 243.77562 * 13 12 11 30 30 H 1.08996 * 110.65132 * 121.07627 * 13 12 11 31 31 H 1.09002 * 109.89829 * 57.90237 * 16 14 13 32 32 H 1.09001 * 109.95856 * 296.81971 * 16 14 13 33 33 H 1.09004 * 109.07883 * 181.70979 * 17 16 14 34 34 H 1.09009 * 109.07649 * 62.74613 * 17 16 14 35 35 H 1.08998 * 109.08114 * 294.23194 * 18 17 16 36 36 H 1.09001 * 109.03067 * 175.21439 * 18 17 16 37 37 H 1.08998 * 109.88929 * 182.96645 * 19 18 17 38 38 H 1.09001 * 109.88896 * 61.86853 * 19 18 17 39 39 H 1.08997 * 117.49845 * 214.96930 * 22 9 7 40 40 H 1.08999 * 117.50024 * 359.97438 * 22 9 7 41 41 H 1.09008 * 117.50231 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49790 * 144.97233 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.1167 -3.7608 0.0028 11 7 3.3368 -3.5169 0.7837 12 6 3.0059 -3.0346 2.1551 13 6 4.0788 -3.6206 3.1081 14 6 5.0242 -4.3808 2.1765 15 1 5.8240 -3.7318 1.8203 16 6 5.5998 -5.6741 2.7236 17 6 6.4572 -6.2986 1.6108 18 6 5.6394 -6.5435 0.3464 19 6 4.9455 -5.2576 -0.1322 20 6 4.0759 -4.7637 1.0071 21 1 3.3893 -5.5513 1.3177 22 6 -0.0728 -2.5504 0.7669 23 6 -0.0729 -2.5511 -0.7631 24 1 -0.4849 0.8400 -0.0004 25 1 2.3862 -4.0174 -1.0217 26 1 1.5584 -4.5840 0.4487 27 1 3.0365 -1.9455 2.1846 28 1 2.0166 -3.3879 2.4457 29 1 3.6213 -4.3008 3.8266 30 1 4.6114 -2.8222 3.6247 31 1 4.7923 -6.3539 2.9954 32 1 6.2188 -5.4660 3.5963 33 1 6.8618 -7.2475 1.9629 34 1 7.2823 -5.6258 1.3767 35 1 4.8832 -7.3011 0.5523 36 1 6.3012 -6.9054 -0.4404 37 1 4.3277 -5.4722 -1.0042 38 1 5.6924 -4.5042 -0.3822 39 1 -0.3272 -3.4829 1.2706 40 1 -0.3989 -1.6401 1.2700 41 1 -0.3994 -1.6412 -1.2668 42 1 -0.3272 -3.4840 -1.2662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162676616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:12 Heat of formation + Delta-G solvation = 8.930776 kcal Electronic energy + Delta-G solvation = -19453.539711 eV Core-core repulsion = 16819.050064 eV Total energy + Delta-G solvation = -2634.489647 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09708 -38.60844 -36.21341 -33.78718 -33.08253 -30.48844 -29.23759 -27.69022 -26.18049 -23.55515 -22.64734 -21.95067 -21.69978 -20.88597 -20.27644 -17.92993 -16.88278 -16.36189 -16.24227 -15.66572 -15.40644 -15.20515 -14.69670 -14.56871 -14.15578 -14.11063 -13.36832 -13.13085 -12.97476 -12.88113 -12.71720 -12.43089 -12.27183 -12.19218 -12.01345 -11.97335 -11.89440 -11.48797 -11.32317 -11.28089 -11.12894 -10.79605 -10.63236 -10.26593 -9.99997 -9.07053 -7.94722 -6.01663 1.40687 1.44335 1.55921 2.47253 3.05141 3.19770 3.62033 3.84021 3.93467 3.98479 4.18156 4.25928 4.38042 4.41737 4.48482 4.53938 4.58915 4.61913 4.65669 4.74730 4.80216 4.84595 4.98249 4.98697 5.06843 5.12500 5.18947 5.25223 5.29818 5.32761 5.34980 5.36453 5.40648 5.49369 5.53065 5.62042 5.68368 5.98644 6.18514 6.21682 6.45805 6.63580 7.02307 7.54349 9.00421 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.006651 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.786424 B = 4208.718922 C = 4543.501152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.005 3.995 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.457 4.457 8 H 0.067 0.933 9 C 0.015 3.985 10 C 0.105 3.895 11 N -0.501 5.501 12 C 0.053 3.947 13 C -0.121 4.121 14 C -0.083 4.083 15 H 0.073 0.927 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.110 4.110 19 C -0.100 4.100 20 C 0.056 3.944 21 H 0.033 0.967 22 C -0.187 4.187 23 C -0.193 4.193 24 H 0.253 0.747 25 H 0.059 0.941 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.336 -12.127 4.718 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.015 3.985 10 C -0.024 4.024 11 N -0.224 5.224 12 C -0.075 4.075 13 C -0.159 4.159 14 C -0.102 4.102 15 H 0.091 0.909 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.138 4.138 20 C -0.053 4.053 21 H 0.051 0.949 22 C -0.225 4.225 23 C -0.231 4.231 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.510 -11.603 4.405 16.927 hybrid contribution -1.040 0.721 0.147 1.274 sum 10.470 -10.882 4.552 15.772 Atomic orbital electron populations 1.70189 1.06800 1.25932 1.51893 1.25728 0.95661 1.02057 0.95837 0.85587 0.79215 0.80240 0.77066 1.19271 1.21286 1.21166 1.20876 0.93147 0.89046 1.46428 0.91509 1.19165 0.85689 0.93817 0.99869 1.21567 0.89685 0.94084 0.97016 1.64577 1.19345 1.25174 1.13300 1.22993 0.96361 1.00453 0.87703 1.22270 0.96458 0.99861 0.97267 1.21766 0.96712 0.96975 0.94781 0.90865 1.21421 0.99501 0.94730 0.98372 1.21531 0.97993 1.01329 0.94358 1.21500 0.99239 0.96053 0.98057 1.21295 0.98089 0.97856 0.96604 1.22514 0.94957 0.90724 0.97115 0.94869 1.22696 1.06875 0.98805 0.94142 1.22708 1.06668 0.99377 0.94391 0.93743 0.92219 0.96731 0.92111 0.95707 0.90793 0.90630 0.91966 0.90403 0.90376 0.91941 0.92251 0.90671 0.93041 0.91951 0.92853 0.90111 0.89900 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.18 8.59 21.45 0.18 -51.99 16 2 C 0.00 0.25 5.28 84.65 0.45 0.70 16 3 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.46 -25.06 7.21 25.60 0.18 -24.88 16 8 H 0.07 3.72 7.12 -2.91 -0.02 3.70 16 9 C 0.02 0.77 1.63 -52.93 -0.09 0.68 16 10 C 0.10 4.49 5.06 86.30 0.44 4.93 16 11 N -0.50 -19.64 4.37 -859.46 -3.76 -23.40 16 12 C 0.05 2.04 5.42 86.56 0.47 2.51 16 13 C -0.12 -3.47 6.61 31.26 0.21 -3.27 16 14 C -0.08 -2.19 2.54 -10.41 -0.03 -2.22 16 15 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 16 C -0.10 -2.00 5.61 30.44 0.17 -1.83 16 17 C -0.11 -1.98 5.84 30.70 0.18 -1.80 16 18 C -0.11 -2.16 5.85 30.70 0.18 -1.98 16 19 C -0.10 -2.67 5.90 30.39 0.18 -2.49 16 20 C 0.06 1.71 1.63 45.31 0.07 1.78 16 21 H 0.03 1.05 7.73 -2.39 -0.02 1.03 16 22 C -0.19 -9.57 8.96 30.59 0.27 -9.30 16 23 C -0.19 -9.91 9.38 30.59 0.29 -9.62 16 24 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.01 0.61 7.64 -2.39 -0.02 0.59 16 27 H 0.06 2.71 7.00 -2.39 -0.02 2.70 16 28 H 0.02 1.02 7.33 -2.39 -0.02 1.00 16 29 H 0.07 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.22 8.04 -2.39 -0.02 1.20 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.74 8.06 -2.39 -0.02 1.72 16 39 H 0.05 2.49 8.05 -2.39 -0.02 2.47 16 40 H 0.08 4.61 6.29 -2.39 -0.02 4.59 16 41 H 0.08 4.74 6.28 -2.38 -0.01 4.73 16 42 H 0.06 2.78 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -59.34 311.97 2.38 -56.95 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.96 Total: 18.59 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 2.97 Total: -46.80 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -3.57 Total: -75.40 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -59.34 2.38 -56.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162676616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.884 kcal (2) G-P(sol) polarization free energy of solvation -59.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds