Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00501 * 2 1 4 4 H 1.48499 * 109.46962 * 269.99645 * 3 2 1 5 5 H 1.48496 * 109.47138 * 29.99429 * 3 2 1 6 6 H 1.48503 * 109.47119 * 149.99711 * 3 2 1 7 7 C 1.37887 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99809 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99774 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.57901 * 354.93115 * 9 7 2 11 11 C 1.53391 * 109.57645 * 115.19617 * 9 7 2 12 12 C 1.53374 * 108.60041 * 60.80095 * 11 9 7 13 13 C 1.53140 * 108.93964 * 59.02144 * 12 11 9 14 14 N 1.46910 * 109.36843 * 359.94717 * 13 12 11 15 15 C 1.46943 * 111.05947 * 61.98465 * 14 13 12 16 16 C 1.53123 * 109.35507 * 298.04592 * 15 14 13 17 17 C 1.46947 * 111.05091 * 297.99474 * 14 13 12 18 18 H 1.09007 * 109.49064 * 181.91952 * 17 14 13 19 19 C 1.52998 * 109.49061 * 301.98808 * 17 14 13 20 20 C 1.54263 * 110.03321 * 303.60903 * 19 17 14 21 21 C 1.54966 * 104.16229 * 217.13387 * 20 19 17 22 22 C 1.54898 * 102.77329 * 37.88712 * 21 20 19 23 23 C 1.53870 * 110.03331 * 186.39043 * 19 17 14 24 24 H 0.97004 * 119.99152 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.75759 * 299.76119 * 11 9 7 26 26 H 1.08999 * 109.58117 * 299.15516 * 12 11 9 27 27 H 1.09002 * 109.57973 * 178.89280 * 12 11 9 28 28 H 1.09007 * 109.48837 * 119.91071 * 13 12 11 29 29 H 1.08993 * 109.49362 * 239.95482 * 13 12 11 30 30 H 1.09004 * 109.48549 * 58.00766 * 15 14 13 31 31 H 1.08999 * 109.49003 * 178.04910 * 15 14 13 32 32 H 1.09000 * 109.57731 * 119.75011 * 16 15 14 33 33 H 1.09009 * 109.57280 * 240.00687 * 16 15 14 34 34 H 1.08998 * 110.01881 * 65.00107 * 19 17 14 35 35 H 1.09000 * 110.48806 * 335.78355 * 20 19 17 36 36 H 1.09007 * 110.48784 * 98.42924 * 20 19 17 37 37 H 1.08995 * 110.72218 * 279.57957 * 21 20 19 38 38 H 1.08999 * 110.92826 * 156.29153 * 21 20 19 39 39 H 1.08995 * 110.48609 * 203.40484 * 22 21 20 40 40 H 1.09003 * 110.59655 * 80.81998 * 22 21 20 41 41 H 1.09000 * 110.03571 * 238.57359 * 23 19 17 42 42 H 1.08998 * 110.03420 * 359.95278 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.1823 -2.3039 0.0908 11 6 1.5271 -3.2522 -1.3069 12 6 3.0311 -3.5385 -1.3982 13 6 3.4527 -4.3732 -0.1854 14 7 2.2811 -4.6233 0.6650 15 6 1.2597 -5.3946 -0.0570 16 6 0.7763 -4.5893 -1.2663 17 6 1.7236 -3.3646 1.1791 18 1 0.8785 -3.5812 1.8326 19 6 2.7993 -2.6140 1.9668 20 6 3.3484 -3.5094 3.0966 21 6 3.5888 -2.5303 4.2734 22 6 2.3865 -1.5600 4.1628 23 6 2.1883 -1.3749 2.6442 24 1 -0.4849 0.8401 -0.0004 25 1 1.2044 -2.6649 -2.1666 26 1 3.5823 -2.5982 -1.4037 27 1 3.2429 -4.0914 -2.3134 28 1 3.8659 -5.3234 -0.5237 29 1 4.2070 -3.8311 0.3848 30 1 1.6883 -6.3378 -0.3959 31 1 0.4187 -5.5950 0.6068 32 1 0.9780 -5.1471 -2.1808 33 1 -0.2948 -4.4064 -1.1787 34 1 3.6087 -2.3146 1.3010 35 1 2.6148 -4.2664 3.3742 36 1 4.2843 -3.9776 2.7916 37 1 4.5298 -1.9956 4.1441 38 1 3.5735 -3.0571 5.2276 39 1 2.6210 -0.6065 4.6359 40 1 1.4964 -1.9995 4.6129 41 1 2.7017 -0.4741 2.3077 42 1 1.1257 -1.3077 2.4111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -10.642483 kcal Electronic energy + Delta-G solvation = -20459.599426 eV Core-core repulsion = 17824.261019 eV Total energy + Delta-G solvation = -2635.338407 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19371 -36.87447 -33.21334 -31.35851 -30.47996 -30.08304 -27.75793 -26.57284 -24.88825 -22.14160 -21.73164 -20.99804 -19.79761 -18.78439 -16.95913 -15.90054 -15.71621 -15.22445 -14.58863 -14.48332 -14.13660 -13.73142 -12.55301 -12.45059 -12.28342 -12.18098 -11.92218 -11.61352 -11.43062 -11.07774 -10.94776 -10.94491 -10.57875 -10.44276 -10.34335 -10.13386 -10.04993 -9.89242 -9.75931 -9.64138 -9.53064 -9.35033 -8.91587 -8.41192 -8.37954 -7.22917 -5.99912 -3.95145 3.28129 3.36669 3.38846 4.43262 4.83070 5.26404 5.44706 5.47676 5.51923 5.53953 5.66784 5.86138 5.97195 6.00571 6.09901 6.15704 6.27999 6.30609 6.35385 6.39046 6.43324 6.46580 6.50130 6.56451 6.59059 6.66034 6.70008 6.77443 6.86136 6.92822 7.05640 7.13574 7.19974 7.30601 7.52029 7.55375 7.60893 7.74196 7.88958 7.99124 8.13273 8.50598 9.08598 9.61546 11.09378 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.013005 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.586651 B = 2152.496253 C = 3215.710219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.488 4.488 8 H 0.056 0.944 9 C 0.011 3.989 10 H 0.067 0.933 11 C -0.078 4.078 12 C -0.138 4.138 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.059 3.941 16 C -0.151 4.151 17 C 0.095 3.905 18 H 0.055 0.945 19 C -0.050 4.050 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.087 4.087 24 H 0.259 0.741 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -6.768 2.805 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.074 0.926 9 C -0.009 4.009 10 H 0.085 0.915 11 C -0.097 4.097 12 C -0.177 4.177 13 C -0.069 4.069 14 N -0.252 5.252 15 C -0.070 4.070 16 C -0.190 4.190 17 C -0.013 4.013 18 H 0.074 0.926 19 C -0.069 4.069 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.125 4.125 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.248 -6.939 3.241 8.757 hybrid contribution 0.111 1.527 -0.917 1.785 sum 4.359 -5.412 2.324 7.327 Atomic orbital electron populations 1.69885 1.05830 1.26293 1.51355 1.24879 0.94627 0.98588 0.95169 0.86880 0.80262 0.84530 0.78024 1.20985 1.21329 1.19695 1.20973 0.92595 0.89901 1.49163 0.92595 1.19687 0.99765 0.92834 0.88570 0.91501 1.21291 0.93040 0.93820 1.01567 1.22109 0.98312 1.00240 0.97054 1.22036 0.93701 0.97953 0.93212 1.62617 1.06910 1.20777 1.34941 1.22028 0.94860 0.95910 0.94182 1.22333 1.00367 0.98253 0.98065 1.22226 0.95217 0.87158 0.96686 0.92631 1.21479 0.97372 0.93485 0.94574 1.22396 0.99960 0.97367 0.95221 1.22515 0.98172 0.97690 0.97994 1.22537 0.97359 0.98021 0.99259 1.21994 1.02557 0.97649 0.90268 0.93098 0.92070 0.91242 0.94501 0.92876 0.91128 0.92298 0.91840 0.93764 0.92618 0.91176 0.92099 0.93142 0.92560 0.93163 0.93235 0.92774 0.92415 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 12.61 55.43 0.70 -24.03 16 2 C 0.07 1.78 4.58 -17.82 -0.08 1.70 16 3 Si 0.87 20.62 28.87 -169.99 -4.91 15.72 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.49 -12.02 3.83 -34.44 -0.13 -12.15 16 8 H 0.06 1.40 5.47 -52.49 -0.29 1.11 16 9 C 0.01 0.26 2.23 -91.22 -0.20 0.06 16 10 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 11 C -0.08 -1.62 2.98 -90.02 -0.27 -1.89 16 12 C -0.14 -2.61 5.49 -26.47 -0.15 -2.76 16 13 C 0.06 1.05 5.72 -3.75 -0.02 1.03 16 14 N -0.53 -9.72 4.54 -225.97 -1.03 -10.74 16 15 C 0.06 1.01 6.09 -3.74 -0.02 0.98 16 16 C -0.15 -2.74 5.74 -26.46 -0.15 -2.89 16 17 C 0.10 1.94 1.63 -67.34 -0.11 1.83 16 18 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 19 C -0.05 -0.98 1.33 -89.51 -0.12 -1.10 16 20 C -0.11 -1.90 5.88 -25.03 -0.15 -2.04 16 21 C -0.13 -1.98 6.91 -24.69 -0.17 -2.15 16 22 C -0.13 -2.31 6.83 -25.07 -0.17 -2.48 16 23 C -0.09 -1.78 4.42 -25.62 -0.11 -1.89 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.41 6.73 -51.93 -0.35 1.06 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.26 6.26 -51.93 -0.33 0.93 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.07 1.47 4.93 -51.93 -0.26 1.22 16 35 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.27 6.72 -51.93 -0.35 0.92 16 42 H 0.07 1.74 6.90 -51.93 -0.36 1.38 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -25.41 296.95 -9.94 -35.35 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.32 Total: 3.01 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -1.86 Total: -23.77 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.33 Total: -34.77 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.91 Total: 15.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.41 -9.94 -35.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.703 kcal (2) G-P(sol) polarization free energy of solvation -25.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds