Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00501 * 2 1 4 4 H 1.48499 * 109.46962 * 269.99645 * 3 2 1 5 5 H 1.48496 * 109.47138 * 29.99429 * 3 2 1 6 6 H 1.48503 * 109.47119 * 149.99711 * 3 2 1 7 7 C 1.37887 * 119.99510 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99809 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99774 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.57901 * 354.93115 * 9 7 2 11 11 C 1.53391 * 109.57645 * 115.19617 * 9 7 2 12 12 C 1.53374 * 108.60041 * 60.80095 * 11 9 7 13 13 C 1.53140 * 108.93964 * 59.02144 * 12 11 9 14 14 N 1.46910 * 109.36843 * 359.94717 * 13 12 11 15 15 C 1.46943 * 111.05947 * 61.98465 * 14 13 12 16 16 C 1.53123 * 109.35507 * 298.04592 * 15 14 13 17 17 C 1.46947 * 111.05091 * 297.99474 * 14 13 12 18 18 H 1.09007 * 109.49064 * 181.91952 * 17 14 13 19 19 C 1.52998 * 109.49061 * 301.98808 * 17 14 13 20 20 C 1.54263 * 110.03321 * 303.60903 * 19 17 14 21 21 C 1.54966 * 104.16229 * 217.13387 * 20 19 17 22 22 C 1.54898 * 102.77329 * 37.88712 * 21 20 19 23 23 C 1.53870 * 110.03331 * 186.39043 * 19 17 14 24 24 H 0.97004 * 119.99152 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.75759 * 299.76119 * 11 9 7 26 26 H 1.08999 * 109.58117 * 299.15516 * 12 11 9 27 27 H 1.09002 * 109.57973 * 178.89280 * 12 11 9 28 28 H 1.09007 * 109.48837 * 119.91071 * 13 12 11 29 29 H 1.08993 * 109.49362 * 239.95482 * 13 12 11 30 30 H 1.09004 * 109.48549 * 58.00766 * 15 14 13 31 31 H 1.08999 * 109.49003 * 178.04910 * 15 14 13 32 32 H 1.09000 * 109.57731 * 119.75011 * 16 15 14 33 33 H 1.09009 * 109.57280 * 240.00687 * 16 15 14 34 34 H 1.08998 * 110.01881 * 65.00107 * 19 17 14 35 35 H 1.09000 * 110.48806 * 335.78355 * 20 19 17 36 36 H 1.09007 * 110.48784 * 98.42924 * 20 19 17 37 37 H 1.08995 * 110.72218 * 279.57957 * 21 20 19 38 38 H 1.08999 * 110.92826 * 156.29153 * 21 20 19 39 39 H 1.08995 * 110.48609 * 203.40484 * 22 21 20 40 40 H 1.09003 * 110.59655 * 80.81998 * 22 21 20 41 41 H 1.09000 * 110.03571 * 238.57359 * 23 19 17 42 42 H 1.08998 * 110.03420 * 359.95278 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.1823 -2.3039 0.0908 11 6 1.5271 -3.2522 -1.3069 12 6 3.0311 -3.5385 -1.3982 13 6 3.4527 -4.3732 -0.1854 14 7 2.2811 -4.6233 0.6650 15 6 1.2597 -5.3946 -0.0570 16 6 0.7763 -4.5893 -1.2663 17 6 1.7236 -3.3646 1.1791 18 1 0.8785 -3.5812 1.8326 19 6 2.7993 -2.6140 1.9668 20 6 3.3484 -3.5094 3.0966 21 6 3.5888 -2.5303 4.2734 22 6 2.3865 -1.5600 4.1628 23 6 2.1883 -1.3749 2.6442 24 1 -0.4849 0.8401 -0.0004 25 1 1.2044 -2.6649 -2.1666 26 1 3.5823 -2.5982 -1.4037 27 1 3.2429 -4.0914 -2.3134 28 1 3.8659 -5.3234 -0.5237 29 1 4.2070 -3.8311 0.3848 30 1 1.6883 -6.3378 -0.3959 31 1 0.4187 -5.5950 0.6068 32 1 0.9780 -5.1471 -2.1808 33 1 -0.2948 -4.4064 -1.1787 34 1 3.6087 -2.3146 1.3010 35 1 2.6148 -4.2664 3.3742 36 1 4.2843 -3.9776 2.7916 37 1 4.5298 -1.9956 4.1441 38 1 3.5735 -3.0571 5.2276 39 1 2.6210 -0.6065 4.6359 40 1 1.4964 -1.9995 4.6129 41 1 2.7017 -0.4741 2.3077 42 1 1.1257 -1.3077 2.4111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -23.792990 kcal Electronic energy + Delta-G solvation = -20460.169675 eV Core-core repulsion = 17824.261019 eV Total energy + Delta-G solvation = -2635.908656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79165 -38.35453 -35.11456 -32.91658 -32.17998 -31.62471 -29.24421 -28.13738 -26.77208 -23.61438 -23.30970 -22.71208 -21.17548 -20.41695 -18.73253 -17.50724 -17.40358 -16.88054 -16.29445 -15.94310 -15.89996 -15.16403 -14.13497 -14.01316 -13.95409 -13.76308 -13.59360 -13.27034 -12.92336 -12.84762 -12.62305 -12.53629 -12.29216 -12.15857 -11.72879 -11.69757 -11.61665 -11.51576 -11.32869 -11.23414 -11.09255 -10.95251 -10.69507 -10.31927 -10.21637 -8.81840 -8.03856 -6.01033 1.34967 1.39478 1.45618 2.44787 3.25767 3.34123 3.98219 4.00311 4.09641 4.11291 4.22466 4.31570 4.51991 4.55707 4.58852 4.63683 4.81217 4.84939 4.87045 4.94787 4.98696 5.01783 5.05380 5.10872 5.11869 5.15287 5.19545 5.30434 5.33740 5.41622 5.49831 5.60505 5.63154 5.69008 5.73510 5.78434 5.91414 5.93211 5.97275 6.34438 6.50172 6.63080 7.08151 7.56580 9.05866 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.013005 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.586651 B = 2152.496253 C = 3215.710219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.023 3.977 3 Si 0.920 3.080 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.470 4.470 8 H 0.054 0.946 9 C 0.009 3.991 10 H 0.020 0.980 11 C -0.083 4.083 12 C -0.132 4.132 13 C 0.062 3.938 14 N -0.525 5.525 15 C 0.059 3.941 16 C -0.145 4.145 17 C 0.106 3.894 18 H 0.039 0.961 19 C -0.048 4.048 20 C -0.102 4.102 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.085 4.085 24 H 0.254 0.746 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -8.851 3.600 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.174 4.174 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.508 4.508 8 H 0.072 0.928 9 C -0.011 4.011 10 H 0.038 0.962 11 C -0.103 4.103 12 C -0.171 4.171 13 C -0.067 4.067 14 N -0.245 5.245 15 C -0.070 4.070 16 C -0.184 4.184 17 C -0.002 4.002 18 H 0.058 0.942 19 C -0.066 4.066 20 C -0.140 4.140 21 C -0.155 4.155 22 C -0.168 4.168 23 C -0.123 4.123 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.440 -9.032 4.036 11.804 hybrid contribution -0.599 2.161 -1.213 2.549 sum 5.842 -6.871 2.822 9.450 Atomic orbital electron populations 1.70026 1.07155 1.26346 1.53842 1.25414 0.95043 1.01139 0.95837 0.86141 0.79597 0.81723 0.77761 1.21101 1.21764 1.18650 1.21135 0.92350 0.90616 1.46733 0.92797 1.19624 0.96767 0.93398 0.91328 0.96174 1.21185 0.95390 0.94864 0.98834 1.22043 0.95907 1.00012 0.99121 1.22115 0.93189 0.99179 0.92171 1.62624 1.07335 1.19048 1.35504 1.22150 0.94904 0.96527 0.93372 1.22261 0.99157 0.96929 1.00042 1.21926 0.95143 0.87890 0.95278 0.94235 1.21398 0.96410 0.93556 0.95273 1.22295 1.00289 0.96987 0.94395 1.22484 0.97400 0.96913 0.98664 1.22495 0.98673 0.99332 0.96340 1.21857 0.99724 0.97413 0.93317 0.93677 0.95251 0.93293 0.92207 0.89692 0.91229 0.89062 0.91634 0.91419 0.93995 0.92574 0.92134 0.91729 0.91775 0.90524 0.92259 0.92327 0.94605 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 12.61 21.45 0.27 -54.17 16 2 C 0.02 1.22 4.58 84.66 0.39 1.61 16 3 Si 0.92 43.52 28.87 68.60 1.98 45.50 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.47 -23.94 3.83 25.60 0.10 -23.84 16 8 H 0.05 2.75 5.47 -2.91 -0.02 2.73 16 9 C 0.01 0.43 2.23 -11.18 -0.02 0.41 16 10 H 0.02 1.13 6.93 -2.39 -0.02 1.12 16 11 C -0.08 -3.50 2.98 -10.40 -0.03 -3.53 16 12 C -0.13 -4.77 5.49 30.77 0.17 -4.60 16 13 C 0.06 1.98 5.72 86.35 0.49 2.47 16 14 N -0.52 -17.92 4.54 -868.85 -3.94 -21.87 16 15 C 0.06 1.84 6.09 86.34 0.53 2.37 16 16 C -0.14 -5.08 5.74 30.77 0.18 -4.90 16 17 C 0.11 4.33 1.63 45.13 0.07 4.40 16 18 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 19 C -0.05 -1.83 1.33 -10.07 -0.01 -1.84 16 20 C -0.10 -3.18 5.88 31.69 0.19 -2.99 16 21 C -0.12 -3.30 6.91 31.92 0.22 -3.07 16 22 C -0.13 -4.32 6.83 31.67 0.22 -4.10 16 23 C -0.08 -3.53 4.42 31.32 0.14 -3.39 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.05 1.95 6.73 -2.39 -0.02 1.94 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.07 2.27 6.26 -2.39 -0.01 2.25 16 30 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.06 2.31 4.93 -2.39 -0.01 2.30 16 35 H 0.06 1.91 7.85 -2.39 -0.02 1.89 16 36 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.60 6.72 -2.39 -0.02 1.58 16 42 H 0.04 1.74 6.90 -2.39 -0.02 1.73 16 Total: -1.00 -57.18 296.95 1.90 -55.28 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.97 Total: 16.27 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 2.62 Total: -41.02 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -3.67 Total: -76.03 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.98 Total: 45.50 kcal Total: -57.18 1.90 -55.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.491 kcal (2) G-P(sol) polarization free energy of solvation -57.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds