Wall clock time and date at job start Mon Mar 30 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46652 * 90.00329 * 3 2 1 5 5 H 1.48505 * 109.47036 * 209.99883 * 3 2 1 6 6 H 1.48498 * 109.47510 * 330.00233 * 3 2 1 7 7 C 1.37877 * 119.99867 * 179.73170 * 2 1 3 8 8 H 1.07999 * 119.99745 * 338.30721 * 7 2 1 9 9 C 1.50704 * 119.99867 * 158.31353 * 7 2 1 10 10 H 1.08993 * 109.57903 * 54.35922 * 9 7 2 11 11 C 1.53386 * 109.57406 * 294.09799 * 9 7 2 12 12 C 1.53392 * 108.59686 * 181.24796 * 11 9 7 13 13 C 1.53125 * 108.84625 * 58.99779 * 12 11 9 14 14 N 1.46947 * 109.35270 * 359.93797 * 13 12 11 15 15 C 1.46939 * 110.96912 * 62.08869 * 14 13 12 16 16 C 1.53126 * 109.35345 * 297.91494 * 15 14 13 17 17 C 1.46910 * 111.05011 * 298.03924 * 14 13 12 18 18 H 1.09007 * 109.48229 * 181.97357 * 17 14 13 19 19 C 1.52995 * 109.49220 * 302.03620 * 17 14 13 20 20 C 1.54259 * 110.03420 * 302.87452 * 19 17 14 21 21 C 1.54888 * 104.19750 * 217.10292 * 20 19 17 22 22 C 1.54890 * 102.74692 * 37.94335 * 21 20 19 23 23 C 1.53871 * 110.03333 * 185.70549 * 19 17 14 24 24 H 0.96997 * 119.99974 * 174.91776 * 1 2 3 25 25 H 1.08998 * 110.11902 * 59.80626 * 11 9 7 26 26 H 1.08995 * 109.57539 * 178.81359 * 12 11 9 27 27 H 1.09007 * 109.57281 * 299.19182 * 12 11 9 28 28 H 1.09000 * 109.49355 * 239.96400 * 13 12 11 29 29 H 1.09002 * 109.48884 * 119.89985 * 13 12 11 30 30 H 1.09000 * 109.48391 * 177.95741 * 15 14 13 31 31 H 1.08997 * 109.49377 * 57.88226 * 15 14 13 32 32 H 1.08994 * 109.57752 * 240.24886 * 16 15 14 33 33 H 1.09000 * 109.68187 * 119.92616 * 16 15 14 34 34 H 1.09001 * 110.01189 * 64.31650 * 19 17 14 35 35 H 1.09003 * 110.48955 * 335.78495 * 20 19 17 36 36 H 1.09007 * 110.48806 * 98.42951 * 20 19 17 37 37 H 1.09002 * 110.76050 * 279.62681 * 21 20 19 38 38 H 1.08999 * 110.75774 * 156.25764 * 21 20 19 39 39 H 1.09001 * 110.48440 * 203.38222 * 22 21 20 40 40 H 1.08991 * 110.60186 * 80.79286 * 22 21 20 41 41 H 1.08999 * 110.03565 * 238.57378 * 23 19 17 42 42 H 1.09004 * 110.03297 * 359.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6528 -0.7000 7 6 2.0045 -1.1941 0.0056 8 1 1.5218 -2.0946 0.3555 9 6 3.4316 -1.2425 -0.4765 10 1 4.0261 -0.5092 0.0681 11 6 3.4779 -0.9294 -1.9773 12 6 4.9345 -1.0154 -2.4503 13 6 5.4646 -2.4236 -2.1659 14 7 4.4062 -3.2240 -1.5345 15 6 3.2516 -3.3702 -2.4316 16 6 2.6578 -1.9893 -2.7237 17 6 4.0037 -2.6442 -0.2461 18 1 3.2443 -3.2756 0.2153 19 6 5.2215 -2.5533 0.6755 20 6 5.8527 -3.9492 0.8564 21 6 6.3118 -3.9698 2.3355 22 6 5.1731 -3.2074 3.0574 23 6 4.7894 -2.0816 2.0750 24 1 -0.4850 -0.8367 -0.0744 25 1 3.0683 0.0629 -2.1661 26 1 4.9833 -0.8160 -3.5207 27 1 5.5369 -0.2830 -1.9127 28 1 6.3221 -2.3611 -1.4959 29 1 5.7672 -2.8940 -3.1014 30 1 2.4978 -3.9967 -1.9547 31 1 3.5724 -3.8330 -3.3648 32 1 1.6230 -1.9572 -2.3828 33 1 2.6957 -1.7926 -3.7951 34 1 5.9543 -1.8625 0.2584 35 1 5.1127 -4.7289 0.6757 36 1 6.7069 -4.0709 0.1901 37 1 7.2613 -3.4474 2.4526 38 1 6.3851 -4.9933 2.7030 39 1 5.5313 -2.7877 3.9975 40 1 4.3227 -3.8658 3.2341 41 1 5.3131 -1.1624 2.3375 42 1 3.7121 -1.9170 2.0974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:18 Heat of formation + Delta-G solvation = -17.702720 kcal Electronic energy + Delta-G solvation = -20263.468491 eV Core-core repulsion = 17627.823929 eV Total energy + Delta-G solvation = -2635.644562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34098 -37.19670 -33.22534 -31.47681 -30.80310 -30.30557 -28.12027 -27.17974 -24.26133 -22.22562 -21.97221 -20.89855 -19.97017 -19.20057 -17.40099 -16.61917 -15.91126 -15.40916 -14.92681 -14.70657 -13.96654 -13.50844 -13.01661 -12.78052 -12.61645 -12.35025 -11.85803 -11.55518 -11.48247 -11.31843 -11.21280 -10.98210 -10.67541 -10.62618 -10.52456 -10.40423 -10.23833 -10.11908 -9.95114 -9.77859 -9.68925 -9.42086 -9.17272 -8.77378 -8.12995 -7.44008 -6.38153 -4.00187 3.41051 3.44178 3.59144 4.52357 4.66064 5.08709 5.12002 5.15983 5.27129 5.40374 5.52144 5.72257 5.83854 5.89726 5.91681 5.94067 5.99785 6.03952 6.05271 6.14382 6.16163 6.23446 6.28638 6.35229 6.35425 6.45371 6.49596 6.53279 6.61499 6.66905 6.74020 6.77927 6.85309 7.03390 7.20747 7.25615 7.30555 7.35727 7.78635 7.93457 8.26612 8.40889 8.94133 9.63506 10.94726 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.010955 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.624013 B = 2555.213943 C = 3289.716397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 1.034 2.966 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.588 4.588 8 H 0.055 0.945 9 C 0.004 3.996 10 H 0.024 0.976 11 C -0.085 4.085 12 C -0.152 4.152 13 C 0.056 3.944 14 N -0.530 5.530 15 C 0.064 3.936 16 C -0.133 4.133 17 C 0.104 3.896 18 H 0.076 0.924 19 C -0.079 4.079 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.122 4.122 24 H 0.268 0.732 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 -5.434 -0.805 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.169 4.169 3 Si 0.862 3.138 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.216 1.216 7 C -0.625 4.625 8 H 0.073 0.927 9 C -0.017 4.017 10 H 0.042 0.958 11 C -0.105 4.105 12 C -0.192 4.192 13 C -0.073 4.073 14 N -0.250 5.250 15 C -0.064 4.064 16 C -0.172 4.172 17 C -0.004 4.004 18 H 0.094 0.906 19 C -0.098 4.098 20 C -0.141 4.141 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.160 4.160 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.293 -4.299 -0.647 12.101 hybrid contribution -0.229 -0.607 -0.326 0.726 sum 11.064 -4.906 -0.973 12.142 Atomic orbital electron populations 1.70809 1.07374 1.30417 1.45199 1.25607 0.95909 1.02155 0.93187 0.84157 0.76007 0.76437 0.77152 1.21353 1.20111 1.21603 1.21922 0.96527 0.96737 1.47330 0.92727 1.19692 0.97695 0.93292 0.90973 0.95751 1.21507 0.91890 0.98161 0.98927 1.22317 0.98773 0.98229 0.99839 1.22098 0.95015 0.91789 0.98418 1.62618 1.09680 1.48537 1.04212 1.21985 0.92405 0.96519 0.95535 1.22027 1.01823 0.95722 0.97591 1.21917 0.94666 0.96095 0.87695 0.90570 1.21827 0.96757 0.96012 0.95159 1.22263 0.99677 0.97686 0.94503 1.22541 0.98060 0.99316 0.96651 1.22340 0.98006 0.97782 0.97867 1.22192 1.03207 0.97027 0.93559 0.92212 0.92033 0.93338 0.92835 0.91304 0.92184 0.91589 0.92473 0.90483 0.94393 0.92133 0.91411 0.92602 0.92308 0.92494 0.92617 0.92015 0.92774 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.69 55.43 0.76 -26.32 16 2 C 0.04 1.03 5.28 -17.82 -0.09 0.93 16 3 Si 1.03 25.06 26.43 -169.99 -4.49 20.56 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.25 5.89 56.52 0.33 -5.92 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.59 -15.48 7.11 -34.44 -0.24 -15.73 16 8 H 0.05 1.57 7.53 -52.49 -0.40 1.18 16 9 C 0.00 0.09 0.80 -91.50 -0.07 0.01 16 10 H 0.02 0.57 5.65 -51.93 -0.29 0.28 16 11 C -0.09 -1.82 2.45 -90.01 -0.22 -2.04 16 12 C -0.15 -2.74 5.75 -26.46 -0.15 -2.89 16 13 C 0.06 0.91 5.72 -3.73 -0.02 0.89 16 14 N -0.53 -9.53 4.56 -226.32 -1.03 -10.57 16 15 C 0.06 1.17 6.09 -3.74 -0.02 1.14 16 16 C -0.13 -2.68 5.50 -26.46 -0.15 -2.83 16 17 C 0.10 2.05 1.29 -67.64 -0.09 1.96 16 18 H 0.08 1.67 7.28 -51.92 -0.38 1.30 16 19 C -0.08 -1.34 1.68 -89.51 -0.15 -1.50 16 20 C -0.10 -1.54 5.91 -25.08 -0.15 -1.69 16 21 C -0.13 -1.69 6.91 -24.74 -0.17 -1.86 16 22 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 23 C -0.12 -2.08 5.81 -25.62 -0.15 -2.23 16 24 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 25 H 0.06 1.43 5.79 -51.93 -0.30 1.13 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.07 1.08 6.26 -51.93 -0.33 0.75 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.78 7.23 -51.93 -0.38 1.41 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.05 6.61 -51.93 -0.34 0.70 16 35 H 0.07 1.07 7.85 -51.93 -0.41 0.67 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.70 7.01 -51.93 -0.36 1.34 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -27.46 299.59 -9.58 -37.04 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.48 Total: 2.52 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -1.85 Total: -27.75 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.27 Total: -36.88 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.49 Total: 20.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.46 -9.58 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.333 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds