Wall clock time and date at job start Mon Mar 30 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47410 * 270.00434 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00262 * 3 2 1 6 6 H 1.48495 * 109.47033 * 150.00046 * 3 2 1 7 7 C 1.37874 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99815 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47087 * 175.69673 * 9 7 2 11 11 C 1.46907 * 110.99537 * 289.50053 * 10 9 7 12 12 C 1.53004 * 117.49732 * 234.80559 * 11 10 9 13 13 C 1.53003 * 117.49680 * 166.14776 * 11 10 9 14 14 C 1.46895 * 111.00142 * 165.55222 * 10 9 7 15 15 H 1.08997 * 111.20451 * 176.73203 * 14 10 9 16 16 C 1.50606 * 111.41309 * 51.78892 * 14 10 9 17 17 C 1.26317 * 122.03659 * 152.84819 * 16 14 10 18 18 C 1.50687 * 122.06059 * 145.90023 * 17 16 14 19 19 C 1.55114 * 99.43523 * 268.25503 * 18 17 16 20 20 C 1.54398 * 109.88958 * 53.39861 * 19 18 17 21 21 C 1.52771 * 111.63590 * 270.45845 * 20 19 18 22 22 C 1.54327 * 111.73786 * 127.69160 * 21 20 19 23 23 H 0.97000 * 120.00380 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47597 * 55.69207 * 9 7 2 25 25 H 1.08996 * 109.46677 * 295.69076 * 9 7 2 26 26 H 1.08997 * 115.55395 * 20.47154 * 11 10 9 27 27 H 1.09002 * 117.49610 * 359.97438 * 12 11 10 28 28 H 1.08995 * 117.49917 * 145.02043 * 12 11 10 29 29 H 1.09003 * 117.49542 * 214.97986 * 13 11 10 30 30 H 1.09002 * 117.50052 * 359.97343 * 13 11 10 31 31 H 1.07993 * 118.97982 * 332.82774 * 16 14 10 32 32 H 1.07991 * 118.97113 * 325.87493 * 17 16 14 33 33 H 1.09003 * 111.40788 * 150.70291 * 18 17 16 34 34 H 1.08996 * 111.47238 * 25.83666 * 18 17 16 35 35 H 1.09003 * 109.40077 * 293.26853 * 19 18 17 36 36 H 1.09001 * 109.32993 * 173.47960 * 19 18 17 37 37 H 1.08998 * 109.03596 * 30.98735 * 20 19 18 38 38 H 1.08993 * 109.03957 * 149.92806 * 20 19 18 39 39 H 1.08998 * 109.02674 * 248.14575 * 21 20 19 40 40 H 1.09004 * 109.02590 * 6.96960 * 21 20 19 41 41 H 1.08997 * 109.41836 * 148.51078 * 22 21 20 42 42 H 1.09000 * 109.44193 * 28.72048 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0011 -2.5752 0.1032 11 6 3.7444 -3.1261 1.4407 12 6 4.9382 -3.6911 2.2130 13 6 3.8910 -4.6383 1.6219 14 6 5.4288 -2.6542 -0.2334 15 1 5.8092 -3.6672 -0.1026 16 6 6.2359 -1.6575 0.5562 17 6 7.4542 -1.8483 0.8297 18 6 8.4439 -0.7145 0.9062 19 6 8.9526 -0.7218 -0.5591 20 6 7.7562 -0.6325 -1.5310 21 6 7.2256 -2.0168 -1.8999 22 6 5.7041 -2.1266 -1.6661 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6154 0.8494 25 1 3.8751 -0.7479 -0.9256 26 1 2.9659 -2.6236 2.0147 27 1 5.9140 -3.6544 1.7286 28 1 4.9449 -3.5606 3.2951 29 1 3.2091 -5.1305 2.3153 30 1 4.1775 -5.2244 0.7486 31 1 5.7582 -0.7515 0.8988 32 1 7.7972 -2.8553 1.0150 33 1 9.2484 -0.9353 1.6078 34 1 7.9535 0.2272 1.1525 35 1 9.5034 -1.6436 -0.7465 36 1 9.6115 0.1321 -0.7165 37 1 6.9575 -0.0596 -1.0599 38 1 8.0733 -0.1198 -2.4390 39 1 7.4365 -2.2094 -2.9517 40 1 7.7353 -2.7658 -1.2938 41 1 5.2743 -2.8146 -2.3941 42 1 5.2470 -1.1441 -1.7842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304169586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:23 Heat of formation + Delta-G solvation = 64.871866 kcal Electronic energy + Delta-G solvation = -19490.820529 eV Core-core repulsion = 16858.756670 eV Total energy + Delta-G solvation = -2632.063859 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77432 -37.22277 -34.14496 -32.76263 -32.36929 -31.04404 -27.39442 -26.05856 -24.59969 -22.17060 -21.83576 -20.85876 -20.55532 -19.44428 -18.21744 -16.80416 -15.98861 -15.29772 -15.14300 -14.87927 -14.07693 -13.91337 -13.34841 -12.92059 -12.67306 -12.61744 -12.32277 -12.09182 -12.06606 -11.66209 -11.53209 -11.12455 -10.92405 -10.82480 -10.75499 -10.61612 -10.42930 -10.18992 -10.01230 -9.87460 -9.70289 -9.58599 -9.25247 -8.54906 -8.35999 -7.17350 -6.04085 -4.00589 2.49410 3.27244 3.35044 3.35949 4.33764 4.42014 4.61032 4.87718 4.88121 5.07472 5.20255 5.26493 5.37036 5.43018 5.46554 5.54787 5.56668 5.58008 5.73152 5.80443 5.83747 5.92157 6.02341 6.04115 6.07788 6.13566 6.24204 6.31319 6.32214 6.46484 6.52730 6.56667 6.59812 6.73560 6.85058 6.89440 7.04700 7.25792 7.64515 7.94932 8.07770 8.68185 9.08058 9.57973 11.09270 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.008666 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.267239 B = 3230.125913 C = 4063.900446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.160 3.840 10 N -0.488 5.488 11 C 0.055 3.945 12 C -0.227 4.227 13 C -0.182 4.182 14 C 0.116 3.884 15 H 0.083 0.917 16 C -0.170 4.170 17 C -0.178 4.178 18 C -0.086 4.086 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.114 4.114 23 H 0.263 0.737 24 H -0.005 1.005 25 H 0.030 0.970 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.763 -3.463 0.463 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.207 5.207 11 C -0.055 4.055 12 C -0.266 4.266 13 C -0.220 4.220 14 C 0.007 3.993 15 H 0.101 0.899 16 C -0.189 4.189 17 C -0.197 4.197 18 C -0.124 4.124 19 C -0.148 4.148 20 C -0.158 4.158 21 C -0.151 4.151 22 C -0.152 4.152 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.048 0.952 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.310 -3.603 0.072 16.703 hybrid contribution 0.755 1.403 0.655 1.722 sum 17.065 -2.200 0.727 17.221 Atomic orbital electron populations 1.69893 1.06083 1.26719 1.51263 1.24886 0.94687 0.98661 0.95023 0.86948 0.80403 0.84347 0.78621 1.20148 1.21230 1.19209 1.21084 0.88838 0.94728 1.49885 0.90046 1.20300 0.96790 0.83984 0.95515 1.61759 1.12043 1.23348 1.23589 1.22524 0.98286 0.94324 0.90354 1.23606 0.95829 1.07531 0.99626 1.22998 1.02299 0.94279 1.02463 1.21479 0.88018 0.96269 0.93571 0.89870 1.22359 0.96492 1.03217 0.96881 1.21149 0.95617 0.98821 1.04102 1.21261 0.97729 0.97336 0.96056 1.22223 0.97218 1.01164 0.94177 1.21917 0.97933 0.97578 0.98369 1.21844 0.95849 0.97081 1.00325 1.22419 0.94715 1.02483 0.95534 0.92720 0.98774 0.95184 0.86136 0.88478 0.89916 0.89365 0.89297 0.87731 0.88636 0.91508 0.91316 0.91994 0.92671 0.91432 0.92847 0.92795 0.91735 0.91512 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.36 27.56 -169.99 -4.68 16.67 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.30 6.42 56.52 0.36 -5.94 16 7 C -0.51 -14.29 9.05 -34.44 -0.31 -14.60 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.16 3.78 2.80 -4.98 -0.01 3.76 16 10 N -0.49 -10.02 4.72 -220.23 -1.04 -11.06 16 11 C 0.05 1.06 5.55 -67.71 -0.38 0.68 16 12 C -0.23 -3.59 8.89 -26.69 -0.24 -3.82 16 13 C -0.18 -2.96 10.16 -26.69 -0.27 -3.23 16 14 C 0.12 1.93 2.07 -67.78 -0.14 1.79 16 15 H 0.08 1.32 6.65 -51.93 -0.35 0.97 16 16 C -0.17 -2.67 3.73 -35.12 -0.13 -2.80 16 17 C -0.18 -2.36 5.74 -35.08 -0.20 -2.57 16 18 C -0.09 -1.00 6.69 -26.77 -0.18 -1.18 16 19 C -0.11 -1.20 5.70 -24.88 -0.14 -1.34 16 20 C -0.12 -1.50 5.21 -26.12 -0.14 -1.64 16 21 C -0.11 -1.45 5.19 -26.15 -0.14 -1.58 16 22 C -0.11 -1.80 5.07 -24.91 -0.13 -1.92 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H -0.01 -0.13 5.48 -51.93 -0.28 -0.42 16 25 H 0.03 0.72 5.27 -51.93 -0.27 0.44 16 26 H 0.12 2.60 7.51 -51.93 -0.39 2.21 16 27 H 0.10 1.46 4.30 -51.93 -0.22 1.24 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 1.92 6.30 -52.49 -0.33 1.59 16 32 H 0.10 1.20 7.60 -52.49 -0.40 0.80 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.98 6.08 -51.93 -0.32 0.66 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.79 5.95 -51.93 -0.31 0.48 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.32 5.41 -51.93 -0.28 1.04 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -29.05 306.03 -9.79 -38.83 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.95 Total: 4.28 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.50 Total: -26.55 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.26 Total: -37.84 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.68 Total: 16.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.05 -9.79 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304169586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.705 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds