Wall clock time and date at job start Mon Mar 30 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47410 * 270.00434 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00262 * 3 2 1 6 6 H 1.48495 * 109.47033 * 150.00046 * 3 2 1 7 7 C 1.37874 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99981 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99815 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47087 * 175.69673 * 9 7 2 11 11 C 1.46907 * 110.99537 * 289.50053 * 10 9 7 12 12 C 1.53004 * 117.49732 * 234.80559 * 11 10 9 13 13 C 1.53003 * 117.49680 * 166.14776 * 11 10 9 14 14 C 1.46895 * 111.00142 * 165.55222 * 10 9 7 15 15 H 1.08997 * 111.20451 * 176.73203 * 14 10 9 16 16 C 1.50606 * 111.41309 * 51.78892 * 14 10 9 17 17 C 1.26317 * 122.03659 * 152.84819 * 16 14 10 18 18 C 1.50687 * 122.06059 * 145.90023 * 17 16 14 19 19 C 1.55114 * 99.43523 * 268.25503 * 18 17 16 20 20 C 1.54398 * 109.88958 * 53.39861 * 19 18 17 21 21 C 1.52771 * 111.63590 * 270.45845 * 20 19 18 22 22 C 1.54327 * 111.73786 * 127.69160 * 21 20 19 23 23 H 0.97000 * 120.00380 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47597 * 55.69207 * 9 7 2 25 25 H 1.08996 * 109.46677 * 295.69076 * 9 7 2 26 26 H 1.08997 * 115.55395 * 20.47154 * 11 10 9 27 27 H 1.09002 * 117.49610 * 359.97438 * 12 11 10 28 28 H 1.08995 * 117.49917 * 145.02043 * 12 11 10 29 29 H 1.09003 * 117.49542 * 214.97986 * 13 11 10 30 30 H 1.09002 * 117.50052 * 359.97343 * 13 11 10 31 31 H 1.07993 * 118.97982 * 332.82774 * 16 14 10 32 32 H 1.07991 * 118.97113 * 325.87493 * 17 16 14 33 33 H 1.09003 * 111.40788 * 150.70291 * 18 17 16 34 34 H 1.08996 * 111.47238 * 25.83666 * 18 17 16 35 35 H 1.09003 * 109.40077 * 293.26853 * 19 18 17 36 36 H 1.09001 * 109.32993 * 173.47960 * 19 18 17 37 37 H 1.08998 * 109.03596 * 30.98735 * 20 19 18 38 38 H 1.08993 * 109.03957 * 149.92806 * 20 19 18 39 39 H 1.08998 * 109.02674 * 248.14575 * 21 20 19 40 40 H 1.09004 * 109.02590 * 6.96960 * 21 20 19 41 41 H 1.08997 * 109.41836 * 148.51078 * 22 21 20 42 42 H 1.09000 * 109.44193 * 28.72048 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0011 -2.5752 0.1032 11 6 3.7444 -3.1261 1.4407 12 6 4.9382 -3.6911 2.2130 13 6 3.8910 -4.6383 1.6219 14 6 5.4288 -2.6542 -0.2334 15 1 5.8092 -3.6672 -0.1026 16 6 6.2359 -1.6575 0.5562 17 6 7.4542 -1.8483 0.8297 18 6 8.4439 -0.7145 0.9062 19 6 8.9526 -0.7218 -0.5591 20 6 7.7562 -0.6325 -1.5310 21 6 7.2256 -2.0168 -1.8999 22 6 5.7041 -2.1266 -1.6661 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6154 0.8494 25 1 3.8751 -0.7479 -0.9256 26 1 2.9659 -2.6236 2.0147 27 1 5.9140 -3.6544 1.7286 28 1 4.9449 -3.5606 3.2951 29 1 3.2091 -5.1305 2.3153 30 1 4.1775 -5.2244 0.7486 31 1 5.7582 -0.7515 0.8988 32 1 7.7972 -2.8553 1.0150 33 1 9.2484 -0.9353 1.6078 34 1 7.9535 0.2272 1.1525 35 1 9.5034 -1.6436 -0.7465 36 1 9.6115 0.1321 -0.7165 37 1 6.9575 -0.0596 -1.0599 38 1 8.0733 -0.1198 -2.4390 39 1 7.4365 -2.2094 -2.9517 40 1 7.7353 -2.7658 -1.2938 41 1 5.2743 -2.8146 -2.3941 42 1 5.2470 -1.1441 -1.7842 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304169586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:22 Heat of formation + Delta-G solvation = 47.874526 kcal Electronic energy + Delta-G solvation = -19491.557589 eV Core-core repulsion = 16858.756670 eV Total energy + Delta-G solvation = -2632.800919 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05660 -38.46509 -35.66137 -34.61871 -33.48280 -32.59198 -29.20906 -27.17092 -25.83979 -24.06026 -23.14001 -22.13175 -21.60877 -20.60142 -19.69959 -18.86071 -17.42413 -16.61826 -16.38057 -16.17295 -15.88056 -15.28255 -14.81923 -14.45729 -14.20555 -13.76523 -13.68048 -13.44856 -13.16724 -13.10392 -12.86356 -12.78845 -12.39154 -12.24343 -12.04258 -11.83339 -11.71123 -11.62989 -11.48059 -11.41305 -11.16895 -11.06319 -10.89500 -10.74562 -9.51541 -8.70158 -8.29815 -6.31415 1.29543 1.30721 1.36272 1.41140 2.30817 2.93525 3.02829 3.24050 3.82621 3.88426 3.99313 4.04892 4.14181 4.22564 4.25502 4.33305 4.39333 4.44405 4.58377 4.74608 4.78596 4.78752 4.81865 4.88698 4.97811 4.98853 5.07455 5.08838 5.15959 5.18156 5.26557 5.30922 5.34942 5.39112 5.47855 5.55800 5.58833 5.81299 6.03596 6.12410 6.47396 6.70806 6.76553 7.31664 8.87327 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.008666 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.267239 B = 3230.125913 C = 4063.900446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.512 4.512 8 H 0.035 0.965 9 C 0.180 3.820 10 N -0.504 5.504 11 C 0.014 3.986 12 C -0.195 4.195 13 C -0.168 4.168 14 C 0.117 3.883 15 H 0.100 0.900 16 C -0.191 4.191 17 C -0.149 4.149 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.104 4.104 22 C -0.114 4.114 23 H 0.266 0.734 24 H -0.013 1.013 25 H 0.031 0.969 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.676 -3.706 0.665 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.764 3.236 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.053 3.947 10 N -0.225 5.225 11 C -0.095 4.095 12 C -0.233 4.233 13 C -0.206 4.206 14 C 0.009 3.991 15 H 0.117 0.883 16 C -0.211 4.211 17 C -0.168 4.168 18 C -0.126 4.126 19 C -0.142 4.142 20 C -0.161 4.161 21 C -0.142 4.142 22 C -0.152 4.152 23 H 0.075 0.925 24 H 0.005 0.995 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.244 -3.866 0.277 20.611 hybrid contribution -0.490 1.381 0.605 1.586 sum 19.753 -2.485 0.882 19.929 Atomic orbital electron populations 1.70049 1.08005 1.27949 1.52898 1.25782 0.95531 1.02806 0.94601 0.85819 0.79348 0.79143 0.79313 1.18918 1.20604 1.17826 1.21322 0.91402 0.93057 1.49295 0.94665 1.19903 0.93536 0.86272 0.94963 1.61669 1.15029 1.21053 1.24705 1.22373 1.00164 0.96461 0.90519 1.23608 0.95139 1.04592 1.00004 1.23075 1.02414 0.92275 1.02870 1.21528 0.85818 0.97380 0.94384 0.88258 1.21935 0.97313 1.01689 1.00134 1.21403 0.94603 1.00412 1.00338 1.21368 0.97782 0.96078 0.97341 1.22193 0.96559 1.02748 0.92716 1.21937 0.97932 0.97000 0.99190 1.21782 0.93211 0.97693 1.01496 1.22424 0.97104 1.00615 0.95010 0.92493 0.99527 0.95136 0.89920 0.87056 0.88623 0.88233 0.88528 0.90968 0.86648 0.89110 0.92540 0.90362 0.91136 0.93993 0.91872 0.91410 0.90507 0.92184 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.94 45.30 27.56 68.60 1.89 47.19 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.61 6.42 99.48 0.64 -10.97 16 7 C -0.51 -30.54 9.05 25.60 0.23 -30.30 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.33 16 9 C 0.18 8.85 2.80 85.56 0.24 9.09 16 10 N -0.50 -21.27 4.72 -850.67 -4.01 -25.28 16 11 C 0.01 0.57 5.55 44.92 0.25 0.82 16 12 C -0.19 -5.78 8.89 30.62 0.27 -5.50 16 13 C -0.17 -5.28 10.16 30.62 0.31 -4.97 16 14 C 0.12 3.81 2.07 44.87 0.09 3.91 16 15 H 0.10 2.89 6.65 -2.39 -0.02 2.88 16 16 C -0.19 -5.73 3.73 29.61 0.11 -5.62 16 17 C -0.15 -3.45 5.74 29.64 0.17 -3.28 16 18 C -0.09 -1.73 6.69 30.57 0.20 -1.52 16 19 C -0.10 -1.84 5.70 31.79 0.18 -1.66 16 20 C -0.12 -2.75 5.21 30.99 0.16 -2.59 16 21 C -0.10 -2.38 5.19 30.97 0.16 -2.22 16 22 C -0.11 -3.52 5.07 31.78 0.16 -3.36 16 23 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 24 H -0.01 -0.65 5.48 -2.39 -0.01 -0.66 16 25 H 0.03 1.50 5.27 -2.39 -0.01 1.49 16 26 H 0.08 3.83 7.51 -2.39 -0.02 3.81 16 27 H 0.11 2.98 4.30 -2.39 -0.01 2.97 16 28 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.67 6.30 -2.91 -0.02 2.65 16 32 H 0.12 2.30 7.60 -2.92 -0.02 2.28 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.08 1.17 7.68 -2.39 -0.02 1.15 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.17 6.08 -2.39 -0.01 1.15 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.57 5.95 -2.38 -0.01 1.56 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.71 5.41 -2.39 -0.01 1.70 16 Total: -1.00 -66.71 306.03 2.10 -64.61 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.91 Total: 19.90 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.01 Total: -46.17 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -3.71 Total: -85.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.89 Total: 47.19 kcal Total: -66.71 2.10 -64.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304169586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.489 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds