Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48493 * 109.47315 * 274.52038 * 3 2 1 5 5 H 1.48503 * 109.47016 * 34.52099 * 3 2 1 6 6 H 1.48496 * 109.47029 * 154.51704 * 3 2 1 7 7 C 1.37877 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00024 * 4.65478 * 7 2 1 9 9 C 1.50700 * 119.99578 * 184.66304 * 7 2 1 10 10 C 1.52998 * 115.55342 * 84.83805 * 9 7 2 11 11 N 1.46896 * 109.47191 * 65.14218 * 10 9 7 12 12 C 1.46907 * 110.99807 * 185.08133 * 11 10 9 13 13 H 1.08998 * 110.43315 * 319.63731 * 12 11 10 14 14 C 1.54266 * 110.48688 * 82.17967 * 12 11 10 15 15 C 1.53881 * 106.59844 * 142.28873 * 14 12 11 16 16 C 1.54266 * 106.59559 * 359.97438 * 15 14 12 17 17 H 1.09000 * 110.48154 * 95.06964 * 16 15 14 18 18 C 1.53005 * 110.48529 * 217.58081 * 16 15 14 19 19 C 1.53007 * 117.49525 * 245.38348 * 18 16 15 20 20 C 1.53004 * 59.99961 * 252.50981 * 19 18 16 21 21 C 1.54890 * 104.31781 * 336.32618 * 16 15 14 22 22 C 1.53002 * 117.49779 * 230.50434 * 9 7 2 23 23 C 1.52997 * 117.49750 * 299.16147 * 9 7 2 24 24 H 0.97002 * 120.00480 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46746 * 305.14362 * 10 9 7 26 26 H 1.09004 * 109.47263 * 185.14314 * 10 9 7 27 27 H 1.00897 * 111.00081 * 61.12411 * 11 10 9 28 28 H 1.08999 * 110.03090 * 23.00401 * 14 12 11 29 29 H 1.09001 * 110.07364 * 261.59058 * 14 12 11 30 30 H 1.09001 * 110.02715 * 240.71734 * 15 14 12 31 31 H 1.08993 * 110.07366 * 119.30140 * 15 14 12 32 32 H 1.08994 * 115.55094 * 31.08907 * 18 16 15 33 33 H 1.08999 * 117.50059 * 359.97438 * 19 18 16 34 34 H 1.09002 * 117.49670 * 145.02137 * 19 18 16 35 35 H 1.08994 * 117.49915 * 252.51569 * 20 19 18 36 36 H 1.09004 * 117.49805 * 107.48696 * 20 19 18 37 37 H 1.08998 * 110.75606 * 156.32381 * 21 16 15 38 38 H 1.09001 * 110.75270 * 279.69357 * 21 16 15 39 39 H 1.08999 * 117.50354 * 215.00532 * 22 9 7 40 40 H 1.09006 * 117.50011 * 0.02562 * 22 9 7 41 41 H 1.08995 * 117.50287 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49890 * 145.00175 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4010 2.1017 -1.3956 5 1 1.4975 2.6232 0.7935 6 1 3.5910 1.4146 0.6024 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1278 -0.0769 9 6 3.5078 -1.1961 0.1056 10 6 4.0691 -1.1294 1.5273 11 7 3.7011 -2.3502 2.2568 12 6 4.1196 -2.2697 3.6627 13 1 5.1047 -1.8097 3.7407 14 6 3.0863 -1.4763 4.4890 15 6 2.9930 -2.1703 5.8592 16 6 3.9723 -3.3615 5.8175 17 1 4.9344 -3.0795 6.2453 18 6 3.3872 -4.5622 6.5637 19 6 4.1049 -5.0227 7.8341 20 6 4.1963 -5.8608 6.5573 21 6 4.1225 -3.6812 4.3094 22 6 4.2875 -2.0165 -0.9240 23 6 4.2948 -0.4877 -0.9987 24 1 -0.4851 0.8400 0.0004 25 1 3.6561 -0.2610 2.0406 26 1 5.1550 -1.0445 1.4856 27 1 4.0878 -3.1684 1.8107 28 1 2.1160 -1.4974 3.9929 29 1 3.4191 -0.4459 4.6143 30 1 1.9773 -2.5282 6.0280 31 1 3.2808 -1.4775 6.6499 32 1 2.3007 -4.6461 6.5406 33 1 4.9942 -4.4705 8.1379 34 1 3.4906 -5.4096 8.6471 35 1 3.6421 -6.7989 6.5303 36 1 5.1455 -5.8596 6.0213 37 1 5.0637 -4.1956 4.1154 38 1 3.2780 -4.2714 3.9537 39 1 5.2003 -2.5087 -0.5885 40 1 3.7131 -2.5544 -1.6783 41 1 3.7255 -0.0204 -1.8021 42 1 5.2126 0.0260 -0.7123 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309573902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = 19.521626 kcal Electronic energy + Delta-G solvation = -18518.722426 eV Core-core repulsion = 15884.692032 eV Total energy + Delta-G solvation = -2634.030393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10661 -38.88529 -37.18265 -34.33830 -34.01561 -29.60071 -28.88521 -27.64991 -25.36992 -23.32250 -23.12849 -22.74653 -21.00547 -20.62402 -20.36789 -18.23024 -17.16900 -16.85390 -16.59513 -15.94244 -15.41973 -15.26509 -14.94945 -14.78396 -14.52615 -14.25017 -13.47996 -13.36990 -13.04196 -12.81917 -12.52472 -12.34748 -12.31383 -12.12910 -12.05069 -11.88988 -11.84411 -11.56209 -11.36696 -11.33267 -10.94258 -10.93456 -10.61803 -10.48054 -10.19182 -9.04357 -8.19729 -6.21611 1.35825 1.38735 1.51531 2.42601 2.92216 3.10550 3.17200 3.53370 3.64763 3.69828 4.01445 4.12058 4.16660 4.24997 4.29216 4.40140 4.47262 4.53614 4.57671 4.59166 4.69579 4.72080 4.83753 4.85985 4.86938 4.89867 4.93575 5.07417 5.11192 5.12295 5.21246 5.29646 5.33092 5.36783 5.42234 5.49666 5.57583 5.59951 5.79599 6.37303 6.48645 6.76446 6.84844 7.44240 8.97090 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.005219 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.301028 B = 5363.834639 C = 5729.298848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.276 1.276 5 H -0.302 1.302 6 H -0.231 1.231 7 C -0.453 4.453 8 H 0.027 0.973 9 C -0.019 4.019 10 C 0.112 3.888 11 N -0.679 5.679 12 C 0.081 3.919 13 H 0.046 0.954 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.050 4.050 17 H 0.083 0.917 18 C -0.155 4.155 19 C -0.174 4.174 20 C -0.179 4.179 21 C -0.103 4.103 22 C -0.163 4.163 23 C -0.199 4.199 24 H 0.260 0.740 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.340 0.660 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 -6.999 13.341 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.202 1.202 5 H -0.230 1.230 6 H -0.154 1.154 7 C -0.491 4.491 8 H 0.045 0.955 9 C -0.020 4.020 10 C -0.017 4.017 11 N -0.310 5.310 12 C -0.028 4.028 13 H 0.063 0.937 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.069 4.069 17 H 0.102 0.898 18 C -0.173 4.173 19 C -0.211 4.211 20 C -0.216 4.216 21 C -0.141 4.141 22 C -0.201 4.201 23 C -0.236 4.236 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.159 0.841 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.532 -6.682 13.470 19.574 hybrid contribution 0.283 0.864 -0.524 1.050 sum 12.815 -5.818 12.946 19.122 Atomic orbital electron populations 1.70069 1.08297 1.27449 1.53982 1.25750 0.95126 1.02591 0.94637 0.85925 0.80549 0.79067 0.78266 1.20180 1.23008 1.15402 1.20290 0.89427 0.92156 1.47242 0.95522 1.19363 0.92099 1.02096 0.88460 1.21439 0.94660 0.92414 0.93181 1.60186 1.64761 1.04350 1.01715 1.22481 0.95571 0.96851 0.87917 0.93652 1.22174 0.99336 0.98436 0.95910 1.22107 0.99615 0.96996 0.95849 1.21433 0.98396 0.93003 0.94051 0.89825 1.22309 0.98158 0.95462 1.01344 1.23077 1.02866 1.03731 0.91412 1.22973 1.02215 0.94808 1.01563 1.22596 1.01982 0.94898 0.94640 1.22828 1.01651 0.92518 1.03068 1.23028 1.02055 0.95679 1.02887 0.93085 0.93849 0.95576 0.84100 0.93793 0.93047 0.92226 0.90869 0.88644 0.88232 0.88318 0.88591 0.88488 0.90469 0.91711 0.87898 0.90680 0.91048 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 2 C 0.01 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.94 45.67 24.94 68.60 1.71 47.38 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.23 -10.16 5.69 99.48 0.57 -9.59 16 7 C -0.45 -26.13 9.33 25.60 0.24 -25.89 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 9 C -0.02 -0.86 0.97 -52.93 -0.05 -0.91 16 10 C 0.11 4.51 4.96 86.30 0.43 4.94 16 11 N -0.68 -25.13 6.15 -485.35 -2.99 -28.11 16 12 C 0.08 2.45 3.16 46.12 0.15 2.60 16 13 H 0.05 1.28 7.98 -2.39 -0.02 1.26 16 14 C -0.12 -3.85 6.18 31.32 0.19 -3.66 16 15 C -0.11 -2.67 6.37 31.32 0.20 -2.48 16 16 C -0.05 -1.06 3.02 -9.72 -0.03 -1.09 16 17 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 18 C -0.15 -2.97 5.16 -10.79 -0.06 -3.03 16 19 C -0.17 -2.69 10.19 30.60 0.31 -2.38 16 20 C -0.18 -2.95 9.98 30.60 0.31 -2.64 16 21 C -0.10 -2.52 5.56 32.02 0.18 -2.34 16 22 C -0.16 -6.24 9.96 30.62 0.30 -5.94 16 23 C -0.20 -7.98 7.31 30.62 0.22 -7.76 16 24 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.04 1.91 6.79 -2.38 -0.02 1.90 16 26 H 0.03 0.91 8.09 -2.39 -0.02 0.90 16 27 H 0.34 11.51 8.59 -89.70 -0.77 10.74 16 28 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.53 7.61 -2.39 -0.02 1.52 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 2.00 7.80 -2.39 -0.02 1.98 16 33 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.80 8.06 -2.39 -0.02 1.79 16 39 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.07 3.08 7.13 -2.39 -0.02 3.06 16 42 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -66.31 328.36 1.94 -64.38 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.06 Total: 27.03 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 2.86 Total: -49.25 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.69 Total: -89.54 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.71 Total: 47.38 kcal Total: -66.31 1.94 -64.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309573902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.900 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds