Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00804 * 2 1 4 4 H 1.48496 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47020 * 300.00392 * 3 2 1 6 6 H 1.48500 * 109.46898 * 59.99727 * 3 2 1 7 7 C 1.37886 * 119.99375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99683 * 186.30469 * 7 2 1 9 9 C 1.50692 * 119.99975 * 6.30271 * 7 2 1 10 10 C 1.53006 * 115.55156 * 275.22297 * 9 7 2 11 11 N 1.46898 * 109.46818 * 304.86211 * 10 9 7 12 12 C 1.46897 * 110.99791 * 174.78404 * 11 10 9 13 13 H 1.09001 * 110.67572 * 31.76518 * 12 11 10 14 14 C 1.54894 * 110.75806 * 268.32914 * 12 11 10 15 15 C 1.54261 * 104.19659 * 203.74340 * 14 12 11 16 16 C 1.53870 * 106.60231 * 23.61158 * 15 14 12 17 17 H 1.09006 * 110.03245 * 240.71799 * 16 15 14 18 18 C 1.52996 * 110.07751 * 119.30315 * 16 15 14 19 19 C 1.52997 * 117.49787 * 131.55420 * 18 16 15 20 20 C 1.53005 * 117.49413 * 62.89491 * 18 16 15 21 21 C 1.54268 * 106.59454 * 359.97438 * 16 15 14 22 22 C 1.53000 * 117.49919 * 129.55317 * 9 7 2 23 23 C 1.53003 * 117.49943 * 60.89362 * 9 7 2 24 24 H 0.96996 * 120.00704 * 185.67182 * 1 2 3 25 25 H 1.08994 * 109.46966 * 64.86589 * 10 9 7 26 26 H 1.08999 * 109.47109 * 184.86379 * 10 9 7 27 27 H 1.00896 * 110.99886 * 298.73607 * 11 10 9 28 28 H 1.09004 * 110.48377 * 322.42532 * 14 12 11 29 29 H 1.09006 * 110.48696 * 85.05999 * 14 12 11 30 30 H 1.08996 * 110.03273 * 264.31969 * 15 14 12 31 31 H 1.09006 * 110.02981 * 142.89730 * 15 14 12 32 32 H 1.08992 * 115.54979 * 277.23030 * 18 16 15 33 33 H 1.09003 * 117.49834 * 0.02562 * 19 18 16 34 34 H 1.09001 * 117.50086 * 145.02091 * 19 18 16 35 35 H 1.09000 * 117.49755 * 214.97461 * 20 18 16 36 36 H 1.08997 * 117.50105 * 359.97438 * 20 18 16 37 37 H 1.09004 * 110.48506 * 217.70999 * 21 16 15 38 38 H 1.09008 * 110.48475 * 95.07717 * 21 16 15 39 39 H 1.09004 * 117.49511 * 359.97438 * 22 9 7 40 40 H 1.09002 * 117.50502 * 145.02152 * 22 9 7 41 41 H 1.09002 * 117.49900 * 214.97492 * 23 9 7 42 42 H 1.09002 * 117.50138 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0795 -1.1970 0.1032 9 6 1.2576 -2.4953 -0.1422 10 6 0.6914 -3.0769 1.1548 11 7 1.7722 -3.2225 2.1390 12 6 1.2457 -3.6622 3.4379 13 1 0.3700 -4.2971 3.3032 14 6 0.9130 -2.4448 4.3360 15 6 0.9777 -3.0049 5.7718 16 6 1.8837 -4.2474 5.7186 17 1 1.3253 -5.1304 6.0296 18 6 3.0996 -4.0501 6.6261 19 6 3.4508 -5.1828 7.5928 20 6 2.8424 -3.8828 8.1251 21 6 2.3375 -4.3993 4.2520 22 6 1.7532 -3.4817 -1.2015 23 6 0.4503 -2.7096 -1.4241 24 1 -0.4851 -0.8358 0.0830 25 1 -0.0723 -2.4073 1.5502 26 1 0.2498 -4.0528 0.9531 27 1 2.4833 -3.8552 1.8041 28 1 1.6537 -1.6568 4.2001 29 1 -0.0874 -2.0711 4.1169 30 1 -0.0204 -3.2847 6.1088 31 1 1.4040 -2.2604 6.4442 32 1 3.9243 -3.4859 6.1909 33 1 2.8159 -6.0687 7.5819 34 1 4.5067 -5.3636 7.7939 35 1 3.4985 -3.2090 8.6761 36 1 1.8071 -3.9130 8.4646 37 1 2.3772 -5.4521 3.9721 38 1 3.3085 -3.9270 4.1022 39 1 2.6191 -3.1894 -1.7955 40 1 1.6755 -4.5451 -0.9747 41 1 -0.4840 -3.2652 -1.3435 42 1 0.4590 -1.9093 -2.1641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309573903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = 27.443133 kcal Electronic energy + Delta-G solvation = -18511.193631 eV Core-core repulsion = 15877.506740 eV Total energy + Delta-G solvation = -2633.686891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.05875 -37.23736 -36.01503 -32.82447 -31.69458 -28.58327 -27.41544 -24.84375 -23.77539 -22.47732 -21.87260 -21.19643 -20.07015 -19.15688 -19.03664 -16.49021 -15.83977 -15.68138 -14.91488 -14.31331 -14.15785 -13.64317 -13.46099 -13.10430 -12.97835 -12.31860 -12.12597 -11.82747 -11.62034 -11.42443 -11.34942 -10.98093 -10.72760 -10.69987 -10.54697 -10.51909 -10.35910 -10.24589 -10.03432 -10.02608 -9.79465 -9.37100 -8.40408 -8.36139 -8.14498 -7.50161 -6.16267 -3.86157 3.52572 3.56168 3.69806 3.71558 4.47612 4.63821 4.69228 4.76262 4.91149 5.00049 5.10568 5.22652 5.32233 5.50157 5.51672 5.54306 5.66323 5.74363 5.79941 5.84160 5.90503 6.00199 6.01254 6.04293 6.17503 6.20393 6.25386 6.29219 6.37192 6.44726 6.51542 6.61339 6.62236 6.72513 6.84449 6.94670 7.32900 7.38615 7.97980 8.17616 8.47358 8.62431 9.05804 9.84613 11.22270 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005359 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.371859 B = 5223.356323 C = 5833.829892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 1.068 2.932 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.104 3.896 11 N -0.654 5.654 12 C 0.081 3.919 13 H 0.038 0.962 14 C -0.109 4.109 15 C -0.117 4.117 16 C -0.058 4.058 17 H 0.066 0.934 18 C -0.138 4.138 19 C -0.185 4.185 20 C -0.182 4.182 21 C -0.117 4.117 22 C -0.201 4.201 23 C -0.181 4.181 24 H 0.271 0.729 25 H 0.065 0.935 26 H -0.006 1.006 27 H 0.331 0.669 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -9.201 12.144 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.898 3.102 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.026 4.026 11 N -0.284 5.284 12 C -0.029 4.029 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.077 4.077 17 H 0.084 0.916 18 C -0.156 4.156 19 C -0.222 4.222 20 C -0.219 4.219 21 C -0.155 4.155 22 C -0.239 4.239 23 C -0.219 4.219 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.012 0.988 27 H 0.149 0.851 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.315 -6.880 12.238 14.425 hybrid contribution -0.099 -2.695 -0.112 2.699 sum 3.217 -9.575 12.126 15.782 Atomic orbital electron populations 1.70661 1.06838 1.31041 1.46522 1.25620 0.96538 1.01946 0.93822 0.83563 0.74632 0.75386 0.76605 1.21672 1.21701 1.21701 1.21130 0.93805 0.89325 1.53460 0.93072 1.19162 0.97599 0.95279 0.85177 1.21617 0.92533 0.95385 0.93028 1.60235 1.13517 1.52969 1.01653 1.22485 0.95336 0.94552 0.90536 0.94414 1.22331 1.01913 0.98184 0.92349 1.22183 0.98512 0.96785 0.98011 1.21270 0.94036 0.98076 0.94277 0.91567 1.22466 1.00112 1.02157 0.90889 1.23013 1.01230 0.92838 1.05088 1.22927 1.01812 1.00216 0.96961 1.22565 0.99761 0.99469 0.93706 1.22893 0.97986 0.95267 1.07737 1.22743 0.92713 1.02194 1.04232 0.91777 0.91633 0.98813 0.85145 0.90280 0.92336 0.92542 0.91582 0.87681 0.89100 0.89170 0.89084 0.88951 0.92441 0.90407 0.90284 0.92049 0.91956 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.24 13.46 55.43 0.75 -26.49 16 2 C 0.02 0.70 5.39 -17.82 -0.10 0.61 16 3 Si 1.07 25.72 29.91 -169.99 -5.08 20.63 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.54 -14.93 8.53 -34.44 -0.29 -15.22 16 8 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.70 1.15 -155.66 -0.18 0.52 16 10 C 0.10 2.31 5.33 -3.82 -0.02 2.29 16 11 N -0.65 -12.98 6.06 -104.64 -0.63 -13.62 16 12 C 0.08 1.34 3.22 -65.73 -0.21 1.13 16 13 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 14 C -0.11 -1.81 6.51 -25.07 -0.16 -1.97 16 15 C -0.12 -1.52 6.28 -25.62 -0.16 -1.68 16 16 C -0.06 -0.69 3.08 -89.51 -0.28 -0.97 16 17 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 18 C -0.14 -1.51 4.93 -90.62 -0.45 -1.95 16 19 C -0.18 -1.74 10.19 -26.69 -0.27 -2.01 16 20 C -0.18 -1.75 9.76 -26.69 -0.26 -2.01 16 21 C -0.12 -1.59 5.74 -25.09 -0.14 -1.73 16 22 C -0.20 -4.43 9.93 -26.69 -0.26 -4.69 16 23 C -0.18 -4.25 8.93 -26.69 -0.24 -4.49 16 24 H 0.27 8.03 6.13 -40.82 -0.25 7.78 16 25 H 0.07 1.61 7.47 -51.93 -0.39 1.22 16 26 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 27 H 0.33 6.23 8.48 -39.29 -0.33 5.89 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.83 7.43 -51.93 -0.39 0.45 16 32 H 0.11 1.21 7.85 -51.93 -0.41 0.80 16 33 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.10 7.66 -51.92 -0.40 0.70 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -28.88 334.09 -10.64 -39.52 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.68 Total: 7.11 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -3.03 Total: -32.19 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.11 Total: -40.11 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.88 -10.64 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309573903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.968 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds