Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00804 * 2 1 4 4 H 1.48496 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47020 * 300.00392 * 3 2 1 6 6 H 1.48500 * 109.46898 * 59.99727 * 3 2 1 7 7 C 1.37886 * 119.99375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99683 * 186.30469 * 7 2 1 9 9 C 1.50692 * 119.99975 * 6.30271 * 7 2 1 10 10 C 1.53006 * 115.55156 * 275.22297 * 9 7 2 11 11 N 1.46898 * 109.46818 * 304.86211 * 10 9 7 12 12 C 1.46897 * 110.99791 * 174.78404 * 11 10 9 13 13 H 1.09001 * 110.67572 * 31.76518 * 12 11 10 14 14 C 1.54894 * 110.75806 * 268.32914 * 12 11 10 15 15 C 1.54261 * 104.19659 * 203.74340 * 14 12 11 16 16 C 1.53870 * 106.60231 * 23.61158 * 15 14 12 17 17 H 1.09006 * 110.03245 * 240.71799 * 16 15 14 18 18 C 1.52996 * 110.07751 * 119.30315 * 16 15 14 19 19 C 1.52997 * 117.49787 * 131.55420 * 18 16 15 20 20 C 1.53005 * 117.49413 * 62.89491 * 18 16 15 21 21 C 1.54268 * 106.59454 * 359.97438 * 16 15 14 22 22 C 1.53000 * 117.49919 * 129.55317 * 9 7 2 23 23 C 1.53003 * 117.49943 * 60.89362 * 9 7 2 24 24 H 0.96996 * 120.00704 * 185.67182 * 1 2 3 25 25 H 1.08994 * 109.46966 * 64.86589 * 10 9 7 26 26 H 1.08999 * 109.47109 * 184.86379 * 10 9 7 27 27 H 1.00896 * 110.99886 * 298.73607 * 11 10 9 28 28 H 1.09004 * 110.48377 * 322.42532 * 14 12 11 29 29 H 1.09006 * 110.48696 * 85.05999 * 14 12 11 30 30 H 1.08996 * 110.03273 * 264.31969 * 15 14 12 31 31 H 1.09006 * 110.02981 * 142.89730 * 15 14 12 32 32 H 1.08992 * 115.54979 * 277.23030 * 18 16 15 33 33 H 1.09003 * 117.49834 * 0.02562 * 19 18 16 34 34 H 1.09001 * 117.50086 * 145.02091 * 19 18 16 35 35 H 1.09000 * 117.49755 * 214.97461 * 20 18 16 36 36 H 1.08997 * 117.50105 * 359.97438 * 20 18 16 37 37 H 1.09004 * 110.48506 * 217.70999 * 21 16 15 38 38 H 1.09008 * 110.48475 * 95.07717 * 21 16 15 39 39 H 1.09004 * 117.49511 * 359.97438 * 22 9 7 40 40 H 1.09002 * 117.50502 * 145.02152 * 22 9 7 41 41 H 1.09002 * 117.49900 * 214.97492 * 23 9 7 42 42 H 1.09002 * 117.50138 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0795 -1.1970 0.1032 9 6 1.2576 -2.4953 -0.1422 10 6 0.6914 -3.0769 1.1548 11 7 1.7722 -3.2225 2.1390 12 6 1.2457 -3.6622 3.4379 13 1 0.3700 -4.2971 3.3032 14 6 0.9130 -2.4448 4.3360 15 6 0.9777 -3.0049 5.7718 16 6 1.8837 -4.2474 5.7186 17 1 1.3253 -5.1304 6.0296 18 6 3.0996 -4.0501 6.6261 19 6 3.4508 -5.1828 7.5928 20 6 2.8424 -3.8828 8.1251 21 6 2.3375 -4.3993 4.2520 22 6 1.7532 -3.4817 -1.2015 23 6 0.4503 -2.7096 -1.4241 24 1 -0.4851 -0.8358 0.0830 25 1 -0.0723 -2.4073 1.5502 26 1 0.2498 -4.0528 0.9531 27 1 2.4833 -3.8552 1.8041 28 1 1.6537 -1.6568 4.2001 29 1 -0.0874 -2.0711 4.1169 30 1 -0.0204 -3.2847 6.1088 31 1 1.4040 -2.2604 6.4442 32 1 3.9243 -3.4859 6.1909 33 1 2.8159 -6.0687 7.5819 34 1 4.5067 -5.3636 7.7939 35 1 3.4985 -3.2090 8.6761 36 1 1.8071 -3.9130 8.4646 37 1 2.3772 -5.4521 3.9721 38 1 3.3085 -3.9270 4.1022 39 1 2.6191 -3.1894 -1.7955 40 1 1.6755 -4.5451 -0.9747 41 1 -0.4840 -3.2652 -1.3435 42 1 0.4590 -1.9093 -2.1641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309573903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = 12.786377 kcal Electronic energy + Delta-G solvation = -18511.829195 eV Core-core repulsion = 15877.506740 eV Total energy + Delta-G solvation = -2634.322456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17312 -38.91239 -37.20273 -34.29163 -33.79163 -29.74301 -28.76846 -26.92462 -25.43125 -23.25093 -23.05474 -22.76874 -21.44121 -21.00420 -20.11579 -18.47785 -16.91154 -16.76779 -16.50510 -15.63256 -15.58979 -15.37054 -15.03108 -14.66631 -14.42765 -14.19925 -13.34229 -13.15807 -13.09796 -12.67657 -12.61818 -12.34914 -12.28227 -12.20270 -12.03353 -11.92574 -11.90570 -11.73807 -11.30343 -11.27000 -10.91852 -10.67255 -10.43453 -10.39358 -10.13696 -9.07894 -8.40422 -6.09680 1.55122 1.63586 1.79234 2.64029 2.92892 3.13360 3.34413 3.45650 3.62770 3.78680 3.86503 4.12736 4.14864 4.20300 4.26707 4.36486 4.47017 4.54713 4.56262 4.59438 4.64835 4.71773 4.81240 4.83099 4.83503 4.86580 4.92731 5.01743 5.08558 5.09928 5.18450 5.26232 5.31235 5.37549 5.38433 5.47144 5.54763 5.57227 6.25250 6.37069 6.44509 6.71324 6.85901 7.66775 8.98944 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005359 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.371859 B = 5223.356323 C = 5833.829892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.023 4.023 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.542 4.542 8 H 0.036 0.964 9 C -0.001 4.001 10 C 0.119 3.881 11 N -0.669 5.669 12 C 0.079 3.921 13 H 0.040 0.960 14 C -0.112 4.112 15 C -0.108 4.108 16 C -0.049 4.049 17 H 0.081 0.919 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.179 4.179 21 C -0.107 4.107 22 C -0.174 4.174 23 C -0.185 4.185 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.011 0.989 27 H 0.338 0.662 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -10.794 13.387 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.221 4.221 3 Si 0.933 3.067 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.580 4.580 8 H 0.054 0.946 9 C -0.002 4.002 10 C -0.010 4.010 11 N -0.299 5.299 12 C -0.031 4.031 13 H 0.058 0.942 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.068 4.068 17 H 0.099 0.901 18 C -0.173 4.173 19 C -0.211 4.211 20 C -0.216 4.216 21 C -0.145 4.145 22 C -0.212 4.212 23 C -0.223 4.223 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.175 -8.493 13.482 16.472 hybrid contribution -0.345 -2.222 -0.512 2.306 sum 3.830 -10.715 12.970 17.254 Atomic orbital electron populations 1.70764 1.07624 1.30523 1.48864 1.26785 0.96663 1.05181 0.93469 0.83036 0.74385 0.72465 0.76829 1.20204 1.20968 1.21413 1.21339 0.93252 0.91052 1.52391 0.94565 1.19262 0.98870 0.95403 0.86651 1.21280 0.92324 0.95132 0.92296 1.60137 1.13285 1.54071 1.02412 1.22565 0.96533 0.94778 0.89225 0.94189 1.22293 0.99737 0.97768 0.95222 1.22125 0.99735 0.97389 0.95329 1.21201 0.94359 0.97826 0.93419 0.90089 1.22361 0.99551 1.03846 0.91498 1.23090 1.01970 0.92722 1.03331 1.23000 1.02348 1.00556 0.95668 1.22491 0.98062 0.99770 0.94190 1.22896 0.96718 0.96344 1.05206 1.22656 0.94342 1.02230 1.03051 0.92827 0.94877 0.97120 0.84399 0.93070 0.94355 0.91277 0.91156 0.88669 0.88277 0.88322 0.88476 0.88475 0.90787 0.91242 0.90498 0.88944 0.90361 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.46 21.45 0.29 -57.04 16 2 C -0.02 -1.30 5.39 84.66 0.46 -0.84 16 3 Si 1.11 52.35 29.91 68.60 2.05 54.41 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.54 -30.42 8.53 25.60 0.22 -30.20 16 8 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 9 C 0.00 -0.05 1.15 -52.93 -0.06 -0.12 16 10 C 0.12 5.32 5.33 86.31 0.46 5.78 16 11 N -0.67 -26.46 6.06 -484.97 -2.94 -29.40 16 12 C 0.08 2.56 3.22 46.20 0.15 2.71 16 13 H 0.04 1.30 7.87 -2.39 -0.02 1.28 16 14 C -0.11 -3.76 6.51 31.67 0.21 -3.56 16 15 C -0.11 -2.68 6.28 31.32 0.20 -2.48 16 16 C -0.05 -1.07 3.08 -10.07 -0.03 -1.10 16 17 H 0.08 1.57 7.94 -2.38 -0.02 1.55 16 18 C -0.15 -3.04 4.93 -10.79 -0.05 -3.09 16 19 C -0.17 -2.77 10.19 30.62 0.31 -2.46 16 20 C -0.18 -2.98 9.76 30.62 0.30 -2.68 16 21 C -0.11 -2.72 5.74 31.66 0.18 -2.54 16 22 C -0.17 -7.38 9.93 30.62 0.30 -7.08 16 23 C -0.18 -8.65 8.93 30.62 0.27 -8.38 16 24 H 0.26 16.00 6.13 -92.71 -0.57 15.43 16 25 H 0.03 1.67 7.47 -2.39 -0.02 1.65 16 26 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 27 H 0.34 12.38 8.48 -89.70 -0.76 11.62 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.69 7.43 -2.38 -0.02 1.67 16 32 H 0.10 2.07 7.85 -2.39 -0.02 2.05 16 33 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.07 1.89 7.66 -2.38 -0.02 1.87 16 39 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 40 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -62.53 334.09 2.72 -59.81 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.41 Total: 28.24 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 2.91 Total: -56.02 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.65 Total: -86.44 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.05 Total: 54.41 kcal Total: -62.53 2.72 -59.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309573903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.599 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds