Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47304 * 240.00350 * 3 2 1 5 5 H 1.48504 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47054 * 120.00160 * 3 2 1 7 7 C 1.37876 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00458 * 173.54921 * 7 2 1 9 9 C 1.50709 * 119.99691 * 353.54302 * 7 2 1 10 10 C 1.52997 * 115.54822 * 85.41428 * 9 7 2 11 11 N 1.46897 * 109.47391 * 65.04627 * 10 9 7 12 12 C 1.46896 * 111.00161 * 185.36781 * 11 10 9 13 13 H 1.09002 * 110.43682 * 327.54597 * 12 11 10 14 14 C 1.54893 * 110.48554 * 90.22783 * 12 11 10 15 15 C 1.54889 * 102.74624 * 156.62170 * 14 12 11 16 16 C 1.54266 * 104.19723 * 322.05391 * 15 14 12 17 17 H 1.08991 * 110.03538 * 264.32533 * 16 15 14 18 18 C 1.53004 * 110.02966 * 142.89810 * 16 15 14 19 19 C 1.52998 * 117.50132 * 131.45815 * 18 16 15 20 20 C 1.53000 * 117.50040 * 62.83237 * 18 16 15 21 21 C 1.53871 * 106.59526 * 23.61505 * 16 15 14 22 22 C 1.53000 * 117.49678 * 231.08061 * 9 7 2 23 23 C 1.52995 * 117.49992 * 299.74072 * 9 7 2 24 24 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46991 * 305.04396 * 10 9 7 26 26 H 1.09004 * 109.46812 * 185.05225 * 10 9 7 27 27 H 1.00902 * 110.99803 * 61.41440 * 11 10 9 28 28 H 1.09005 * 110.75439 * 274.93472 * 14 12 11 29 29 H 1.08994 * 110.75828 * 38.30484 * 14 12 11 30 30 H 1.09003 * 110.48375 * 203.37410 * 15 14 12 31 31 H 1.08995 * 110.60112 * 80.79496 * 15 14 12 32 32 H 1.09008 * 115.54556 * 277.16251 * 18 16 15 33 33 H 1.09007 * 117.49494 * 0.02562 * 19 18 16 34 34 H 1.09000 * 117.49947 * 145.01654 * 19 18 16 35 35 H 1.08994 * 117.49742 * 214.97498 * 20 18 16 36 36 H 1.08997 * 117.49552 * 359.97438 * 20 18 16 37 37 H 1.09007 * 110.03006 * 240.71151 * 21 16 15 38 38 H 1.09002 * 110.03533 * 119.28782 * 21 16 15 39 39 H 1.08997 * 117.49594 * 215.00300 * 22 9 7 40 40 H 1.08997 * 117.49931 * 0.02971 * 22 9 7 41 41 H 1.09000 * 117.50137 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49889 * 144.97141 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1970 -0.1056 9 6 1.2582 -2.4951 0.1457 10 6 0.7021 -3.0862 -1.1514 11 7 1.8141 -3.4575 -2.0365 12 6 1.3183 -3.9109 -3.3428 13 1 0.3565 -4.4117 -3.2320 14 6 1.2011 -2.7168 -4.3224 15 6 1.2785 -3.4032 -5.7087 16 6 2.3170 -4.5276 -5.5168 17 1 3.3000 -4.1876 -5.8423 18 6 1.9007 -5.7668 -6.3119 19 6 2.9605 -6.4287 -7.1948 20 6 1.8193 -5.6351 -7.8341 21 6 2.3422 -4.8505 -4.0126 22 6 1.7472 -3.4737 1.2153 23 6 0.4419 -2.7016 1.4231 24 1 -0.4850 0.8400 0.0004 25 1 0.0740 -2.3464 -1.6478 26 1 0.1088 -3.9714 -0.9221 27 1 2.3984 -4.1597 -1.6080 28 1 0.2462 -2.2064 -4.1967 29 1 2.0314 -2.0237 -4.1876 30 1 1.6172 -2.6961 -6.4660 31 1 0.3102 -3.8210 -5.9844 32 1 1.1746 -6.4168 -5.8234 33 1 3.9546 -5.9816 -7.2088 34 1 2.9320 -7.5144 -7.2872 35 1 1.0400 -6.1987 -8.3470 36 1 2.0619 -4.6655 -8.2690 37 1 3.3377 -4.6670 -3.6080 38 1 2.0580 -5.8900 -3.8489 39 1 1.6727 -4.5386 0.9950 40 1 2.6084 -3.1763 1.8136 41 1 0.4450 -1.8966 2.1580 42 1 -0.4916 -3.2582 1.3394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309573904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = 31.865190 kcal Electronic energy + Delta-G solvation = -18418.888420 eV Core-core repulsion = 15785.393284 eV Total energy + Delta-G solvation = -2633.495136 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.02725 -37.03882 -35.89739 -32.71191 -31.74293 -28.57005 -27.30998 -25.39383 -23.58369 -22.46702 -21.84745 -21.01200 -19.75082 -19.43954 -18.84223 -16.04564 -15.79884 -15.46870 -14.84024 -14.42523 -14.08005 -14.03655 -13.33359 -12.99489 -12.93016 -12.44583 -11.93771 -11.69041 -11.60566 -11.31020 -11.08767 -10.88550 -10.86041 -10.65199 -10.59000 -10.41771 -10.32073 -10.26319 -10.15402 -10.04654 -9.80694 -9.33504 -8.73055 -8.29762 -7.98762 -7.43292 -5.89118 -3.90127 3.40124 3.43807 3.47426 3.71481 4.52872 4.53641 4.72890 4.77592 4.93734 5.00946 5.13664 5.33313 5.41179 5.49803 5.51757 5.58296 5.69162 5.77295 5.85057 5.89118 5.95253 6.00457 6.08218 6.16679 6.25097 6.27455 6.34347 6.39304 6.51630 6.57172 6.63649 6.71743 6.79698 6.82170 7.02583 7.18075 7.53576 7.67903 8.03566 8.09668 8.28451 8.63539 9.08316 9.72438 11.20855 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.005023 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.912176 B = 5572.583537 C = 6145.236490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.058 0.942 9 C 0.054 3.946 10 C 0.108 3.892 11 N -0.662 5.662 12 C 0.084 3.916 13 H 0.037 0.963 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.057 4.057 17 H 0.070 0.930 18 C -0.140 4.140 19 C -0.184 4.184 20 C -0.182 4.182 21 C -0.118 4.118 22 C -0.216 4.216 23 C -0.160 4.160 24 H 0.257 0.743 25 H 0.076 0.924 26 H -0.009 1.009 27 H 0.328 0.672 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -10.412 -11.569 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.020 4.020 11 N -0.292 5.292 12 C -0.027 4.027 13 H 0.055 0.945 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.076 4.076 17 H 0.088 0.912 18 C -0.158 4.158 19 C -0.221 4.221 20 C -0.219 4.219 21 C -0.156 4.156 22 C -0.254 4.254 23 C -0.198 4.198 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.009 0.991 27 H 0.146 0.854 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.344 -9.634 -11.777 15.395 hybrid contribution -0.044 -0.018 0.264 0.269 sum 2.300 -9.652 -11.512 15.198 Atomic orbital electron populations 1.70001 1.05781 1.26151 1.50493 1.24920 0.94729 0.98622 0.95118 0.86750 0.79651 0.83544 0.78535 1.20278 1.21581 1.20512 1.20259 0.92762 0.88402 1.49158 0.92376 1.18830 0.96978 0.93663 0.85246 1.21569 0.90742 0.95686 0.94050 1.60387 1.21703 1.44503 1.02621 1.22327 0.95506 0.93972 0.90861 0.94501 1.22482 1.02446 0.97532 0.92320 1.22376 0.98529 0.96591 0.97899 1.21290 0.98883 0.93011 0.94444 0.91166 1.22482 1.01701 0.99626 0.92021 1.23002 0.94814 0.99037 1.05254 1.22904 1.01239 1.01915 0.95844 1.22368 1.00320 0.98644 0.94303 1.22984 0.98478 0.95407 1.08493 1.22514 0.91930 1.01172 1.04167 0.93348 0.90602 0.99059 0.85431 0.92043 0.90308 0.92172 0.91903 0.88064 0.88923 0.89245 0.89214 0.88870 0.90908 0.92318 0.92281 0.90583 0.90122 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 12.92 55.43 0.72 -24.69 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.47 -12.86 8.74 -34.44 -0.30 -13.16 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.32 1.55 -155.66 -0.24 1.08 16 10 C 0.11 2.45 5.34 -3.83 -0.02 2.43 16 11 N -0.66 -13.03 6.20 -104.98 -0.65 -13.68 16 12 C 0.08 1.38 3.19 -66.05 -0.21 1.17 16 13 H 0.04 0.62 7.87 -51.93 -0.41 0.22 16 14 C -0.11 -1.79 6.57 -24.74 -0.16 -1.95 16 15 C -0.12 -1.50 6.12 -25.07 -0.15 -1.65 16 16 C -0.06 -0.69 3.08 -89.50 -0.28 -0.97 16 17 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 18 C -0.14 -1.47 4.83 -90.62 -0.44 -1.91 16 19 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 20 C -0.18 -1.70 9.98 -26.73 -0.27 -1.97 16 21 C -0.12 -1.59 5.93 -25.62 -0.15 -1.75 16 22 C -0.22 -4.77 9.96 -26.69 -0.27 -5.03 16 23 C -0.16 -3.82 9.42 -26.70 -0.25 -4.07 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.08 1.93 8.13 -51.93 -0.42 1.51 16 26 H -0.01 -0.19 8.09 -51.93 -0.42 -0.61 16 27 H 0.33 6.07 8.38 -39.29 -0.33 5.74 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.10 1.07 7.93 -51.92 -0.41 0.66 16 33 H 0.09 0.84 8.07 -51.92 -0.42 0.42 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.01 7.93 -51.92 -0.41 0.60 16 38 H 0.06 0.73 7.54 -51.93 -0.39 0.34 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -27.93 337.55 -10.78 -38.71 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.81 Total: 5.95 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -3.11 Total: -27.98 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.06 Total: -38.36 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.93 -10.78 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309573904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.575 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds