Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47304 * 240.00350 * 3 2 1 5 5 H 1.48504 * 109.47168 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47054 * 120.00160 * 3 2 1 7 7 C 1.37876 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00458 * 173.54921 * 7 2 1 9 9 C 1.50709 * 119.99691 * 353.54302 * 7 2 1 10 10 C 1.52997 * 115.54822 * 85.41428 * 9 7 2 11 11 N 1.46897 * 109.47391 * 65.04627 * 10 9 7 12 12 C 1.46896 * 111.00161 * 185.36781 * 11 10 9 13 13 H 1.09002 * 110.43682 * 327.54597 * 12 11 10 14 14 C 1.54893 * 110.48554 * 90.22783 * 12 11 10 15 15 C 1.54889 * 102.74624 * 156.62170 * 14 12 11 16 16 C 1.54266 * 104.19723 * 322.05391 * 15 14 12 17 17 H 1.08991 * 110.03538 * 264.32533 * 16 15 14 18 18 C 1.53004 * 110.02966 * 142.89810 * 16 15 14 19 19 C 1.52998 * 117.50132 * 131.45815 * 18 16 15 20 20 C 1.53000 * 117.50040 * 62.83237 * 18 16 15 21 21 C 1.53871 * 106.59526 * 23.61505 * 16 15 14 22 22 C 1.53000 * 117.49678 * 231.08061 * 9 7 2 23 23 C 1.52995 * 117.49992 * 299.74072 * 9 7 2 24 24 H 0.97000 * 120.00263 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46991 * 305.04396 * 10 9 7 26 26 H 1.09004 * 109.46812 * 185.05225 * 10 9 7 27 27 H 1.00902 * 110.99803 * 61.41440 * 11 10 9 28 28 H 1.09005 * 110.75439 * 274.93472 * 14 12 11 29 29 H 1.08994 * 110.75828 * 38.30484 * 14 12 11 30 30 H 1.09003 * 110.48375 * 203.37410 * 15 14 12 31 31 H 1.08995 * 110.60112 * 80.79496 * 15 14 12 32 32 H 1.09008 * 115.54556 * 277.16251 * 18 16 15 33 33 H 1.09007 * 117.49494 * 0.02562 * 19 18 16 34 34 H 1.09000 * 117.49947 * 145.01654 * 19 18 16 35 35 H 1.08994 * 117.49742 * 214.97498 * 20 18 16 36 36 H 1.08997 * 117.49552 * 359.97438 * 20 18 16 37 37 H 1.09007 * 110.03006 * 240.71151 * 21 16 15 38 38 H 1.09002 * 110.03533 * 119.28782 * 21 16 15 39 39 H 1.08997 * 117.49594 * 215.00300 * 22 9 7 40 40 H 1.08997 * 117.49931 * 0.02971 * 22 9 7 41 41 H 1.09000 * 117.50137 * 359.97438 * 23 9 7 42 42 H 1.09001 * 117.49889 * 144.97141 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1970 -0.1056 9 6 1.2582 -2.4951 0.1457 10 6 0.7021 -3.0862 -1.1514 11 7 1.8141 -3.4575 -2.0365 12 6 1.3183 -3.9109 -3.3428 13 1 0.3565 -4.4117 -3.2320 14 6 1.2011 -2.7168 -4.3224 15 6 1.2785 -3.4032 -5.7087 16 6 2.3170 -4.5276 -5.5168 17 1 3.3000 -4.1876 -5.8423 18 6 1.9007 -5.7668 -6.3119 19 6 2.9605 -6.4287 -7.1948 20 6 1.8193 -5.6351 -7.8341 21 6 2.3422 -4.8505 -4.0126 22 6 1.7472 -3.4737 1.2153 23 6 0.4419 -2.7016 1.4231 24 1 -0.4850 0.8400 0.0004 25 1 0.0740 -2.3464 -1.6478 26 1 0.1088 -3.9714 -0.9221 27 1 2.3984 -4.1597 -1.6080 28 1 0.2462 -2.2064 -4.1967 29 1 2.0314 -2.0237 -4.1876 30 1 1.6172 -2.6961 -6.4660 31 1 0.3102 -3.8210 -5.9844 32 1 1.1746 -6.4168 -5.8234 33 1 3.9546 -5.9816 -7.2088 34 1 2.9320 -7.5144 -7.2872 35 1 1.0400 -6.1987 -8.3470 36 1 2.0619 -4.6655 -8.2690 37 1 3.3377 -4.6670 -3.6080 38 1 2.0580 -5.8900 -3.8489 39 1 1.6727 -4.5386 0.9950 40 1 2.6084 -3.1763 1.8136 41 1 0.4450 -1.8966 2.1580 42 1 -0.4916 -3.2582 1.3394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309573904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = 18.089231 kcal Electronic energy + Delta-G solvation = -18419.485791 eV Core-core repulsion = 15785.393284 eV Total energy + Delta-G solvation = -2634.092507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12069 -38.66077 -37.12048 -34.22312 -33.77814 -29.72095 -28.69736 -27.42347 -25.22969 -23.21192 -22.92891 -22.70584 -21.03940 -20.85015 -20.38403 -17.99535 -16.80271 -16.62750 -16.58158 -16.18084 -15.47628 -15.27000 -14.85173 -14.66840 -14.33976 -13.67214 -13.46844 -13.19719 -12.85972 -12.82837 -12.59189 -12.40522 -12.32889 -12.19490 -12.01354 -11.95269 -11.86279 -11.62778 -11.34825 -11.25213 -10.92891 -10.72384 -10.64901 -10.34647 -9.89559 -9.01378 -8.01901 -6.07862 1.43904 1.44649 1.51518 2.48837 2.95268 3.27911 3.31793 3.64913 3.67596 3.74803 3.91070 4.15683 4.23555 4.29901 4.41783 4.53210 4.57379 4.59880 4.68659 4.70941 4.73662 4.80352 4.85293 4.91270 4.94494 4.99686 5.02720 5.11161 5.11890 5.21684 5.29239 5.32832 5.34981 5.39200 5.43933 5.59209 5.65190 5.77800 5.90142 6.42951 6.56249 6.82056 6.95216 7.57042 9.07081 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.005023 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.912176 B = 5572.583537 C = 6145.236490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.047 0.953 9 C 0.025 3.975 10 C 0.125 3.875 11 N -0.672 5.672 12 C 0.081 3.919 13 H 0.035 0.965 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.051 4.051 17 H 0.072 0.928 18 C -0.151 4.151 19 C -0.178 4.178 20 C -0.179 4.179 21 C -0.109 4.109 22 C -0.187 4.187 23 C -0.168 4.168 24 H 0.255 0.745 25 H 0.038 0.962 26 H 0.002 0.998 27 H 0.337 0.663 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -11.899 -12.677 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.004 4.004 11 N -0.303 5.303 12 C -0.028 4.028 13 H 0.053 0.947 14 C -0.151 4.151 15 C -0.143 4.143 16 C -0.070 4.070 17 H 0.091 0.909 18 C -0.169 4.169 19 C -0.215 4.215 20 C -0.215 4.215 21 C -0.147 4.147 22 C -0.224 4.224 23 C -0.206 4.206 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.020 0.980 27 H 0.155 0.845 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.277 -11.131 -12.886 17.341 hybrid contribution -0.322 0.439 0.614 0.821 sum 2.954 -10.693 -12.272 16.543 Atomic orbital electron populations 1.70109 1.06898 1.26583 1.51577 1.25563 0.95457 1.01510 0.95117 0.85860 0.78532 0.80109 0.78549 1.20125 1.21333 1.19908 1.20494 0.92452 0.90042 1.48713 0.93468 1.18945 0.98088 0.93983 0.86524 1.21188 0.91079 0.94902 0.93245 1.60285 1.21090 1.45546 1.03378 1.22406 0.96388 0.94609 0.89448 0.94732 1.22443 1.00308 0.97373 0.94992 1.22306 0.99462 0.96850 0.95709 1.21207 0.98650 0.93453 0.93661 0.90911 1.22380 1.02777 0.99171 0.92591 1.23075 0.94654 0.99740 1.04018 1.22977 1.01572 1.02191 0.94804 1.22293 0.98934 0.98538 0.94919 1.22967 0.97069 0.96415 1.05928 1.22433 0.93446 1.01345 1.03370 0.93595 0.94310 0.97989 0.84489 0.94120 0.92592 0.91178 0.91131 0.87946 0.88759 0.88114 0.88179 0.88827 0.91258 0.90798 0.89305 0.90566 0.92468 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.45 12.92 21.45 0.28 -53.17 16 2 C 0.02 1.26 5.39 84.65 0.46 1.71 16 3 Si 0.94 44.90 29.54 68.60 2.03 46.93 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.48 -26.63 8.74 25.60 0.22 -26.40 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.03 1.25 1.55 -52.93 -0.08 1.17 16 10 C 0.13 5.71 5.34 86.30 0.46 6.17 16 11 N -0.67 -26.30 6.20 -486.04 -3.01 -29.32 16 12 C 0.08 2.64 3.19 45.99 0.15 2.79 16 13 H 0.03 1.15 7.87 -2.39 -0.02 1.13 16 14 C -0.11 -3.74 6.57 31.89 0.21 -3.53 16 15 C -0.11 -2.59 6.12 31.67 0.19 -2.40 16 16 C -0.05 -1.12 3.08 -10.07 -0.03 -1.16 16 17 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 18 C -0.15 -2.77 4.83 -10.79 -0.05 -2.83 16 19 C -0.18 -2.78 10.18 30.59 0.31 -2.47 16 20 C -0.18 -2.84 9.98 30.60 0.31 -2.53 16 21 C -0.11 -2.74 5.93 31.32 0.19 -2.56 16 22 C -0.19 -7.94 9.96 30.62 0.30 -7.63 16 23 C -0.17 -8.02 9.42 30.62 0.29 -7.73 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.04 2.03 8.13 -2.38 -0.02 2.01 16 26 H 0.00 0.09 8.09 -2.39 -0.02 0.07 16 27 H 0.34 12.04 8.38 -89.69 -0.75 11.29 16 28 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 32 H 0.10 1.88 7.93 -2.38 -0.02 1.87 16 33 H 0.09 1.45 8.07 -2.38 -0.02 1.43 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.81 7.93 -2.38 -0.02 1.79 16 38 H 0.07 1.65 7.54 -2.39 -0.02 1.63 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -59.92 337.55 2.42 -57.49 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.21 Total: 25.47 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 2.92 Total: -47.40 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.74 Total: -82.49 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -59.92 2.42 -57.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309573904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.584 kcal (2) G-P(sol) polarization free energy of solvation -59.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds