Wall clock time and date at job start Mon Mar 30 2020 06:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53658 * 116.28064 * 2 1 4 4 C 1.52075 * 117.25093 * 292.18330 * 2 1 3 5 5 H 1.08991 * 115.93194 * 359.52881 * 4 2 1 6 6 C 1.52073 * 120.01645 * 214.81860 * 4 2 1 7 7 C 1.52866 * 110.51746 * 338.30103 * 6 4 2 8 8 C 1.55054 * 107.82076 * 55.59431 * 7 6 4 9 9 C 1.52712 * 115.39341 * 140.91613 * 2 1 3 10 10 H 1.09000 * 109.35595 * 248.85576 * 9 2 1 11 11 N 1.46895 * 109.35510 * 8.57199 * 9 2 1 12 12 C 1.46901 * 111.00218 * 198.21648 * 11 9 2 13 13 C 1.52995 * 109.47271 * 183.60917 * 12 11 9 14 14 C 1.50697 * 115.56398 * 80.46007 * 13 12 11 15 15 H 1.07999 * 119.99980 * 270.40863 * 14 13 12 16 16 C 1.37885 * 119.99843 * 90.39757 * 14 13 12 17 17 N 1.31515 * 119.99710 * 173.56648 * 16 14 13 18 18 Si 1.86796 * 119.99960 * 353.57379 * 16 14 13 19 19 H 1.48506 * 109.47153 * 85.04725 * 18 16 14 20 20 H 1.48499 * 109.46903 * 205.04482 * 18 16 14 21 21 H 1.48495 * 109.47381 * 325.04376 * 18 16 14 22 22 C 1.52996 * 117.50103 * 294.76881 * 13 12 11 23 23 C 1.52995 * 60.00378 * 252.51096 * 22 13 12 24 24 H 1.08998 * 109.47029 * 278.48891 * 1 2 3 25 25 H 1.09001 * 109.47589 * 38.48987 * 1 2 3 26 26 H 1.09002 * 109.47137 * 158.49307 * 1 2 3 27 27 H 1.08999 * 117.53845 * 359.72595 * 3 2 1 28 28 H 1.08999 * 117.53428 * 144.97381 * 3 2 1 29 29 H 1.08999 * 109.26734 * 98.57154 * 6 4 2 30 30 H 1.08998 * 109.26654 * 218.06787 * 6 4 2 31 31 H 1.09004 * 109.61774 * 174.61848 * 7 6 4 32 32 H 1.08999 * 109.62108 * 294.97316 * 7 6 4 33 33 H 1.08996 * 109.42014 * 165.34321 * 8 7 6 34 34 H 1.08997 * 110.58373 * 44.31334 * 8 7 6 35 35 H 1.00900 * 111.00054 * 322.17473 * 11 9 2 36 36 H 1.09002 * 109.46486 * 63.61014 * 12 11 9 37 37 H 1.08998 * 109.46859 * 303.61328 * 12 11 9 38 38 H 0.96995 * 119.99690 * 179.97438 * 17 16 14 39 39 H 1.09004 * 117.49914 * 145.02200 * 22 13 12 40 40 H 1.09003 * 117.49643 * 0.02562 * 22 13 12 41 41 H 1.09006 * 117.49759 * 107.48583 * 23 22 13 42 42 H 1.08996 * 117.49921 * 252.50824 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2103 1.3778 0.0000 4 6 2.2263 0.5105 -1.2519 5 1 1.5732 0.8324 -2.0629 6 6 3.5357 -0.1173 -1.7037 7 6 4.2240 -0.8212 -0.5342 8 6 3.2228 -1.8463 0.0582 9 6 2.1848 -1.0709 0.8698 10 1 2.6749 -0.5960 1.7198 11 7 1.1556 -1.9987 1.3572 12 6 1.6417 -2.7644 2.5128 13 6 0.5786 -3.7804 2.9351 14 6 0.5306 -5.0477 2.1211 15 1 -0.0942 -5.1013 1.2418 16 6 1.2844 -6.1387 2.4988 17 7 1.1481 -7.2832 1.8655 18 14 2.4991 -5.9911 3.9102 19 1 1.7923 -6.2144 5.1971 20 1 3.5695 -7.0079 3.7504 21 1 3.1012 -4.6337 3.9052 22 6 -0.7463 -3.2350 3.4718 23 6 0.2558 -3.8864 4.4269 24 1 -0.3633 0.1517 1.0164 25 1 -0.3634 0.8044 -0.6396 26 1 -0.3633 -0.9561 -0.3768 27 1 1.5669 2.2575 -0.0046 28 1 3.1431 1.4791 0.5547 29 1 3.3337 -0.8427 -2.4917 30 1 4.1928 0.6611 -2.0914 31 1 5.1097 -1.3456 -0.8928 32 1 4.5130 -0.0859 0.2167 33 1 3.7557 -2.5375 0.7111 34 1 2.7255 -2.4003 -0.7378 35 1 0.3031 -1.5077 1.5814 36 1 1.8433 -2.0843 3.3404 37 1 2.5580 -3.2886 2.2417 38 1 1.6786 -8.0505 2.1310 39 1 -1.6526 -3.7928 3.2360 40 1 -0.8607 -2.1522 3.5236 41 1 0.8008 -3.2322 5.1075 42 1 0.0087 -4.8727 4.8196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336777189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:30 Heat of formation + Delta-G solvation = 40.921136 kcal Electronic energy + Delta-G solvation = -19140.176484 eV Core-core repulsion = 16507.074043 eV Total energy + Delta-G solvation = -2633.102441 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96103 -37.24366 -34.27514 -33.27303 -31.95048 -29.16381 -27.50245 -26.12579 -24.74828 -23.17718 -21.85518 -21.43600 -20.14969 -18.83891 -17.79432 -16.44796 -15.83577 -15.14276 -14.63145 -14.55568 -14.09754 -13.73533 -13.50520 -12.97802 -12.84017 -12.78204 -12.58291 -12.18091 -11.97000 -11.81661 -11.43417 -11.21375 -11.04141 -10.89379 -10.65703 -10.61904 -10.34661 -10.02874 -9.99198 -9.71139 -9.53012 -9.32532 -8.91781 -8.46851 -8.41794 -7.63189 -5.99535 -3.98096 3.34894 3.43337 3.47389 3.77407 4.44955 4.50989 4.65767 4.86483 4.98537 5.03023 5.15394 5.28241 5.29419 5.35400 5.44569 5.60575 5.62702 5.75863 5.80313 5.90937 5.92545 5.96671 6.09698 6.11855 6.15183 6.18813 6.22355 6.24527 6.25302 6.33882 6.43476 6.49612 6.54799 6.59192 6.74949 6.80200 7.14921 7.31862 7.80787 7.85049 8.09756 8.66031 9.07938 9.64698 11.13146 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.006659 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.755237 B = 4203.771240 C = 4664.745637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.189 4.189 4 C -0.129 4.129 5 H 0.096 0.904 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.107 4.107 9 C 0.127 3.873 10 H 0.032 0.968 11 N -0.667 5.667 12 C 0.097 3.903 13 C 0.012 3.988 14 C -0.467 4.467 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.265 1.265 22 C -0.181 4.181 23 C -0.207 4.207 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.336 0.664 36 H 0.000 1.000 37 H 0.072 0.928 38 H 0.262 0.738 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 16.025 -3.128 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.110 4.110 3 C -0.226 4.226 4 C -0.147 4.147 5 H 0.114 0.886 6 C -0.125 4.125 7 C -0.161 4.161 8 C -0.145 4.145 9 C 0.017 3.983 10 H 0.049 0.951 11 N -0.300 5.300 12 C -0.032 4.032 13 C 0.011 3.989 14 C -0.505 4.505 15 H 0.097 0.903 16 C -0.128 4.128 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.218 4.218 23 C -0.245 4.245 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.018 0.982 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.548 15.340 -3.586 16.148 hybrid contribution 0.682 0.709 1.587 1.867 sum 4.230 16.049 -1.999 16.717 Atomic orbital electron populations 1.21298 0.92068 1.02600 1.01281 1.21505 0.94864 0.94474 1.00172 1.23257 1.02576 0.94337 1.02429 1.21863 0.98788 1.02347 0.91714 0.88622 1.20853 0.94361 0.99083 0.98179 1.21931 0.98141 0.98283 0.97708 1.21907 0.95495 0.96877 1.00250 1.20881 0.92435 0.90456 0.94556 0.95063 1.60435 1.05452 1.27441 1.36644 1.21829 0.98897 0.93629 0.88801 1.19404 0.92072 0.96526 0.90926 1.20215 1.26621 0.92504 1.11119 0.90284 1.24951 0.96568 0.94943 0.96298 1.69905 1.40947 1.01085 1.42090 0.86884 0.81319 0.77881 0.83135 1.20449 1.22351 1.18992 1.22726 0.95580 0.97232 1.06287 1.23034 1.05524 1.01322 0.94582 0.92539 0.93089 0.90399 0.89314 0.89114 0.91373 0.92140 0.91897 0.92263 0.91924 0.90221 0.84330 0.98240 0.90980 0.92801 0.89540 0.91604 0.91353 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.11 37.16 0.30 -1.16 16 2 C -0.11 -1.46 2.56 -154.79 -0.40 -1.86 16 3 C -0.19 -2.15 9.30 -26.74 -0.25 -2.40 16 4 C -0.13 -1.52 5.70 -91.92 -0.52 -2.04 16 5 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.09 -0.99 5.90 -27.27 -0.16 -1.15 16 7 C -0.12 -1.52 5.76 -25.71 -0.15 -1.67 16 8 C -0.11 -1.69 5.32 -25.71 -0.14 -1.82 16 9 C 0.13 1.99 2.40 -67.92 -0.16 1.83 16 10 H 0.03 0.50 7.87 -51.93 -0.41 0.10 16 11 N -0.67 -12.30 5.82 -106.95 -0.62 -12.93 16 12 C 0.10 2.04 4.85 -3.83 -0.02 2.02 16 13 C 0.01 0.28 1.04 -155.66 -0.16 0.12 16 14 C -0.47 -13.11 9.41 -34.44 -0.32 -13.43 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 16 C 0.07 2.12 5.46 -17.82 -0.10 2.02 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.88 22.01 24.95 -169.99 -4.24 17.77 16 19 H -0.28 -6.83 6.92 56.52 0.39 -6.44 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.34 6.19 56.52 0.35 -5.99 16 22 C -0.18 -3.70 9.56 -26.74 -0.26 -3.96 16 23 C -0.21 -4.49 7.59 -26.73 -0.20 -4.70 16 24 H 0.06 0.69 7.28 -51.93 -0.38 0.31 16 25 H 0.05 0.55 8.08 -51.93 -0.42 0.14 16 26 H 0.08 1.10 7.83 -51.93 -0.41 0.70 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.03 7.18 -51.93 -0.37 0.66 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.71 7.06 -51.93 -0.37 0.34 16 33 H 0.06 1.07 7.14 -51.93 -0.37 0.70 16 34 H 0.08 1.37 8.06 -51.93 -0.42 0.96 16 35 H 0.34 5.78 5.63 -39.29 -0.22 5.56 16 36 H 0.00 -0.01 7.94 -51.93 -0.41 -0.42 16 37 H 0.07 1.64 6.10 -51.93 -0.32 1.32 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.07 1.17 8.01 -51.93 -0.42 0.76 16 41 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 42 H 0.09 2.04 7.09 -51.93 -0.37 1.67 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -29.37 316.49 -9.31 -38.68 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.45 Total: 6.84 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.54 Total: -28.19 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.15 Total: -39.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.24 Total: 17.77 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.37 -9.31 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336777189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.601 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds