Wall clock time and date at job start Mon Mar 30 2020 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52308 * 115.28775 * 2 1 4 4 C 1.52071 * 115.92575 * 291.92041 * 2 1 3 5 5 H 1.08991 * 117.25606 * 359.71567 * 4 2 1 6 6 C 1.52720 * 120.52080 * 209.98897 * 4 2 1 7 7 C 1.52876 * 110.14832 * 21.47347 * 6 4 2 8 8 C 1.53285 * 108.55112 * 305.46500 * 7 6 4 9 9 C 1.52075 * 114.64186 * 145.30100 * 2 1 3 10 10 H 1.09000 * 109.26279 * 46.61153 * 9 2 1 11 11 N 1.46902 * 109.26687 * 287.11382 * 9 2 1 12 12 C 1.46899 * 110.99940 * 154.50199 * 11 9 2 13 13 C 1.52995 * 109.46867 * 185.50529 * 12 11 9 14 14 C 1.50703 * 115.56607 * 320.28758 * 13 12 11 15 15 H 1.07998 * 119.99798 * 99.51222 * 14 13 12 16 16 C 1.37881 * 119.99941 * 279.51483 * 14 13 12 17 17 N 1.31520 * 120.00108 * 8.80461 * 16 14 13 18 18 Si 1.86801 * 119.99911 * 188.80602 * 16 14 13 19 19 H 1.48505 * 109.47034 * 59.99859 * 18 16 14 20 20 H 1.48495 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46937 * 299.99959 * 18 16 14 22 22 C 1.53006 * 117.49699 * 174.59867 * 13 12 11 23 23 C 1.52991 * 60.03231 * 252.52160 * 22 13 12 24 24 H 1.09005 * 109.46937 * 249.11498 * 1 2 3 25 25 H 1.08994 * 109.47182 * 9.11275 * 1 2 3 26 26 H 1.08993 * 109.47361 * 129.11867 * 1 2 3 27 27 H 1.08999 * 117.54107 * 0.57926 * 3 2 1 28 28 H 1.09001 * 117.53590 * 145.82440 * 3 2 1 29 29 H 1.09001 * 109.35303 * 141.67817 * 6 4 2 30 30 H 1.08999 * 109.35890 * 261.40034 * 6 4 2 31 31 H 1.08999 * 109.62323 * 65.20756 * 7 6 4 32 32 H 1.09004 * 109.61141 * 185.56323 * 7 6 4 33 33 H 1.08994 * 109.64541 * 314.74395 * 8 7 6 34 34 H 1.09006 * 109.58833 * 194.21269 * 8 7 6 35 35 H 1.00898 * 111.00015 * 278.45328 * 11 9 2 36 36 H 1.09003 * 109.47233 * 65.50739 * 12 11 9 37 37 H 1.09002 * 109.47252 * 305.50692 * 12 11 9 38 38 H 0.96997 * 119.99735 * 174.96246 * 17 16 14 39 39 H 1.09001 * 117.49770 * 145.02161 * 22 13 12 40 40 H 1.08999 * 117.49977 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.50147 * 107.47467 * 23 22 13 42 42 H 1.08999 * 117.50489 * 252.47632 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1806 1.3771 0.0000 4 6 2.1948 0.5106 -1.2688 5 1 1.5417 0.8318 -2.0800 6 6 3.5587 -0.0250 -1.6992 7 6 3.8181 -1.3857 -1.0524 8 6 3.6547 -1.2434 0.4651 9 6 2.1640 -1.1364 0.7869 10 1 1.6715 -2.0731 0.5259 11 7 1.9952 -0.8841 2.2242 12 6 2.0183 -2.1402 2.9855 13 6 1.7037 -1.8519 4.4547 14 6 2.3230 -0.5990 5.0187 15 1 1.7351 0.3029 5.1036 16 6 3.6403 -0.6043 5.4261 17 7 4.4049 -1.6422 5.1659 18 14 4.3387 0.8627 6.3478 19 1 3.5750 1.0668 7.6050 20 1 5.7658 0.6102 6.6715 21 1 4.2302 2.0772 5.5001 22 6 1.5547 -3.0507 5.3937 23 6 0.3199 -2.2516 4.9727 24 1 -0.3633 -0.3664 0.9602 25 1 -0.3633 1.0146 -0.1628 26 1 -0.3634 -0.6483 -0.7972 27 1 1.5220 2.2456 0.0098 28 1 3.1188 1.4912 0.5429 29 1 3.5793 -0.1308 -2.7839 30 1 4.3356 0.6740 -1.3895 31 1 3.1011 -2.1139 -1.4315 32 1 4.8311 -1.7142 -1.2851 33 1 4.1682 -0.3446 0.8063 34 1 4.0743 -2.1185 0.9615 35 1 2.6963 -0.2427 2.5635 36 1 3.0063 -2.5941 2.9078 37 1 1.2717 -2.8238 2.5814 38 1 5.3490 -1.6166 5.3871 39 1 1.9047 -2.9332 6.4193 40 1 1.6813 -4.0447 4.9648 41 1 -0.3659 -2.7196 4.2665 42 1 -0.1429 -1.6086 5.7214 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336777191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:32 Heat of formation + Delta-G solvation = 30.718585 kcal Electronic energy + Delta-G solvation = -19233.347291 eV Core-core repulsion = 16599.802434 eV Total energy + Delta-G solvation = -2633.544857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75758 -36.73691 -34.02430 -33.05824 -31.90106 -29.10656 -27.19645 -25.55249 -24.65205 -22.78560 -21.47111 -20.99247 -20.27622 -19.14482 -17.84708 -15.87091 -15.43959 -14.65733 -14.54440 -14.14226 -13.99005 -13.54632 -13.33244 -13.18805 -12.82479 -12.54272 -12.15015 -11.74459 -11.60636 -11.37170 -11.17978 -11.02112 -10.92121 -10.82475 -10.71986 -10.49651 -10.41228 -10.11487 -10.05638 -9.52272 -9.33008 -9.12946 -8.73308 -8.41869 -8.00665 -7.18675 -5.98980 -4.01807 3.31973 3.37174 3.40773 3.99951 4.43092 4.86688 4.90042 5.01337 5.20161 5.29056 5.35007 5.43234 5.47359 5.52311 5.67598 5.76866 5.88391 5.89743 6.04587 6.11751 6.17517 6.20647 6.23013 6.28523 6.39001 6.41944 6.48067 6.50047 6.60836 6.64430 6.70937 6.76978 6.84316 6.87943 7.06859 7.17866 7.51561 7.53789 7.93298 8.22798 8.53171 8.61761 8.99987 9.61150 11.08862 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.007294 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.778560 B = 3838.069937 C = 4281.235504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.172 4.172 4 C -0.155 4.155 5 H 0.095 0.905 6 C -0.086 4.086 7 C -0.114 4.114 8 C -0.150 4.150 9 C 0.125 3.875 10 H 0.068 0.932 11 N -0.664 5.664 12 C 0.109 3.891 13 C 0.056 3.944 14 C -0.481 4.481 15 H 0.060 0.940 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.172 4.172 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.354 0.646 36 H 0.030 0.970 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 1.547 -11.837 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.209 4.209 4 C -0.174 4.174 5 H 0.113 0.887 6 C -0.123 4.123 7 C -0.152 4.152 8 C -0.189 4.189 9 C 0.014 3.986 10 H 0.087 0.913 11 N -0.295 5.295 12 C -0.020 4.020 13 C 0.056 3.944 14 C -0.519 4.519 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.519 5.519 18 Si 0.713 3.287 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.210 4.210 23 C -0.244 4.244 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.001 1.479 -11.753 12.220 hybrid contribution 1.481 0.547 0.543 1.669 sum -1.520 2.025 -11.210 11.492 Atomic orbital electron populations 1.21350 0.92625 1.00620 1.02321 1.20932 0.94724 0.95549 0.97189 1.23149 1.02959 0.94140 1.00677 1.22334 0.98461 1.04979 0.91600 0.88707 1.21014 0.95069 0.96829 0.99395 1.21525 1.00759 0.96946 0.96018 1.22354 0.98692 1.02334 0.95506 1.20727 0.92292 0.95517 0.90080 0.91337 1.60395 1.55877 1.14108 0.99160 1.21351 0.97641 0.89338 0.93655 1.18787 0.91926 0.94039 0.89678 1.20356 0.95960 0.95448 1.40178 0.92167 1.24976 0.97201 0.95559 0.95609 1.69983 1.05297 1.29343 1.47254 0.86775 0.77776 0.83263 0.80883 1.20343 1.21565 1.20232 1.22588 1.01929 0.95456 1.01013 1.22962 0.92091 1.05295 1.04054 0.90747 0.93396 0.93514 0.89484 0.89091 0.92287 0.92057 0.92051 0.92536 0.91821 0.91678 0.82492 0.95139 0.94873 0.93184 0.90507 0.92204 0.91876 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.08 -1.24 2.16 -155.81 -0.34 -1.58 16 3 C -0.17 -2.49 9.21 -26.75 -0.25 -2.74 16 4 C -0.15 -2.02 5.83 -90.90 -0.53 -2.55 16 5 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.09 -1.04 5.83 -26.94 -0.16 -1.20 16 7 C -0.11 -1.50 5.93 -26.65 -0.16 -1.66 16 8 C -0.15 -2.40 4.94 -26.65 -0.13 -2.53 16 9 C 0.12 2.10 2.05 -68.25 -0.14 1.96 16 10 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 11 N -0.66 -13.44 5.90 -107.30 -0.63 -14.08 16 12 C 0.11 2.43 5.62 -3.83 -0.02 2.41 16 13 C 0.06 1.37 1.68 -155.62 -0.26 1.11 16 14 C -0.48 -12.74 7.45 -34.44 -0.26 -13.00 16 15 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 16 C 0.07 1.84 5.41 -17.82 -0.10 1.74 16 17 N -0.88 -24.28 13.19 55.43 0.73 -23.55 16 18 Si 0.89 20.89 29.55 -169.99 -5.02 15.86 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.17 -4.07 9.79 -26.73 -0.26 -4.33 16 23 C -0.21 -4.62 9.88 -26.70 -0.26 -4.88 16 24 H 0.07 1.19 7.99 -51.93 -0.41 0.78 16 25 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.19 7.91 -51.93 -0.41 0.77 16 28 H 0.09 1.41 7.26 -51.93 -0.38 1.03 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.75 8.06 -51.93 -0.42 0.34 16 31 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.08 7.01 -51.93 -0.36 0.72 16 34 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 35 H 0.35 7.91 7.40 -39.29 -0.29 7.62 16 36 H 0.03 0.74 7.65 -51.93 -0.40 0.34 16 37 H 0.03 0.70 7.72 -51.93 -0.40 0.30 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 42 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -26.27 328.76 -10.09 -36.36 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.61 Total: 8.93 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: -2.50 Total: -28.48 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.10 Total: -37.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.27 -10.09 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336777191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.076 kcal (2) G-P(sol) polarization free energy of solvation -26.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds