Wall clock time and date at job start Mon Mar 30 2020 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52308 * 115.28775 * 2 1 4 4 C 1.52071 * 115.92575 * 291.92041 * 2 1 3 5 5 H 1.08991 * 117.25606 * 359.71567 * 4 2 1 6 6 C 1.52720 * 120.52080 * 209.98897 * 4 2 1 7 7 C 1.52876 * 110.14832 * 21.47347 * 6 4 2 8 8 C 1.53285 * 108.55112 * 305.46500 * 7 6 4 9 9 C 1.52075 * 114.64186 * 145.30100 * 2 1 3 10 10 H 1.09000 * 109.26279 * 46.61153 * 9 2 1 11 11 N 1.46902 * 109.26687 * 287.11382 * 9 2 1 12 12 C 1.46899 * 110.99940 * 154.50199 * 11 9 2 13 13 C 1.52995 * 109.46867 * 185.50529 * 12 11 9 14 14 C 1.50703 * 115.56607 * 320.28758 * 13 12 11 15 15 H 1.07998 * 119.99798 * 99.51222 * 14 13 12 16 16 C 1.37881 * 119.99941 * 279.51483 * 14 13 12 17 17 N 1.31520 * 120.00108 * 8.80461 * 16 14 13 18 18 Si 1.86801 * 119.99911 * 188.80602 * 16 14 13 19 19 H 1.48505 * 109.47034 * 59.99859 * 18 16 14 20 20 H 1.48495 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46937 * 299.99959 * 18 16 14 22 22 C 1.53006 * 117.49699 * 174.59867 * 13 12 11 23 23 C 1.52991 * 60.03231 * 252.52160 * 22 13 12 24 24 H 1.09005 * 109.46937 * 249.11498 * 1 2 3 25 25 H 1.08994 * 109.47182 * 9.11275 * 1 2 3 26 26 H 1.08993 * 109.47361 * 129.11867 * 1 2 3 27 27 H 1.08999 * 117.54107 * 0.57926 * 3 2 1 28 28 H 1.09001 * 117.53590 * 145.82440 * 3 2 1 29 29 H 1.09001 * 109.35303 * 141.67817 * 6 4 2 30 30 H 1.08999 * 109.35890 * 261.40034 * 6 4 2 31 31 H 1.08999 * 109.62323 * 65.20756 * 7 6 4 32 32 H 1.09004 * 109.61141 * 185.56323 * 7 6 4 33 33 H 1.08994 * 109.64541 * 314.74395 * 8 7 6 34 34 H 1.09006 * 109.58833 * 194.21269 * 8 7 6 35 35 H 1.00898 * 111.00015 * 278.45328 * 11 9 2 36 36 H 1.09003 * 109.47233 * 65.50739 * 12 11 9 37 37 H 1.09002 * 109.47252 * 305.50692 * 12 11 9 38 38 H 0.96997 * 119.99735 * 174.96246 * 17 16 14 39 39 H 1.09001 * 117.49770 * 145.02161 * 22 13 12 40 40 H 1.08999 * 117.49977 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.50147 * 107.47467 * 23 22 13 42 42 H 1.08999 * 117.50489 * 252.47632 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1806 1.3771 0.0000 4 6 2.1948 0.5106 -1.2688 5 1 1.5417 0.8318 -2.0800 6 6 3.5587 -0.0250 -1.6992 7 6 3.8181 -1.3857 -1.0524 8 6 3.6547 -1.2434 0.4651 9 6 2.1640 -1.1364 0.7869 10 1 1.6715 -2.0731 0.5259 11 7 1.9952 -0.8841 2.2242 12 6 2.0183 -2.1402 2.9855 13 6 1.7037 -1.8519 4.4547 14 6 2.3230 -0.5990 5.0187 15 1 1.7351 0.3029 5.1036 16 6 3.6403 -0.6043 5.4261 17 7 4.4049 -1.6422 5.1659 18 14 4.3387 0.8627 6.3478 19 1 3.5750 1.0668 7.6050 20 1 5.7658 0.6102 6.6715 21 1 4.2302 2.0772 5.5001 22 6 1.5547 -3.0507 5.3937 23 6 0.3199 -2.2516 4.9727 24 1 -0.3633 -0.3664 0.9602 25 1 -0.3633 1.0146 -0.1628 26 1 -0.3634 -0.6483 -0.7972 27 1 1.5220 2.2456 0.0098 28 1 3.1188 1.4912 0.5429 29 1 3.5793 -0.1308 -2.7839 30 1 4.3356 0.6740 -1.3895 31 1 3.1011 -2.1139 -1.4315 32 1 4.8311 -1.7142 -1.2851 33 1 4.1682 -0.3446 0.8063 34 1 4.0743 -2.1185 0.9615 35 1 2.6963 -0.2427 2.5635 36 1 3.0063 -2.5941 2.9078 37 1 1.2717 -2.8238 2.5814 38 1 5.3490 -1.6166 5.3871 39 1 1.9047 -2.9332 6.4193 40 1 1.6813 -4.0447 4.9648 41 1 -0.3659 -2.7196 4.2665 42 1 -0.1429 -1.6086 5.7214 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336777191.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:32 Heat of formation + Delta-G solvation = 18.241001 kcal Electronic energy + Delta-G solvation = -19233.888360 eV Core-core repulsion = 16599.802434 eV Total energy + Delta-G solvation = -2634.085925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96152 -38.55627 -35.51084 -34.22436 -33.95935 -30.44960 -28.38378 -27.50473 -26.21185 -24.17934 -22.86311 -22.66621 -21.40058 -21.03135 -19.15860 -17.81079 -16.65422 -16.56929 -15.98670 -15.77018 -15.41798 -15.06953 -14.65384 -14.40527 -14.29155 -13.90062 -13.68859 -13.17220 -13.05845 -12.92908 -12.82510 -12.78434 -12.51290 -12.33425 -12.19450 -11.99729 -11.87787 -11.67941 -11.35856 -11.19372 -10.72619 -10.50357 -10.42241 -10.31668 -9.88046 -8.83806 -8.04928 -6.12423 1.41767 1.44005 1.50011 2.44787 2.84345 3.22132 3.47098 3.70038 3.77647 3.81772 4.08242 4.19515 4.23500 4.31873 4.39178 4.45667 4.59543 4.64160 4.68623 4.74879 4.80303 4.94493 4.97470 5.02106 5.04685 5.05216 5.09091 5.14709 5.20681 5.24828 5.29942 5.31566 5.38457 5.44956 5.53182 5.59695 5.64352 5.67131 5.83282 6.45991 6.65372 6.80894 6.94485 7.52602 9.01784 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.007294 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.778560 B = 3838.069937 C = 4281.235504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C -0.182 4.182 4 C -0.131 4.131 5 H 0.117 0.883 6 C -0.086 4.086 7 C -0.108 4.108 8 C -0.145 4.145 9 C 0.126 3.874 10 H 0.066 0.934 11 N -0.665 5.665 12 C 0.124 3.876 13 C 0.030 3.970 14 C -0.488 4.488 15 H 0.048 0.952 16 C 0.030 3.970 17 N -0.906 5.906 18 Si 0.939 3.061 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.271 1.271 22 C -0.176 4.176 23 C -0.186 4.186 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.339 0.661 36 H 0.002 0.998 37 H 0.045 0.955 38 H 0.256 0.744 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 2.188 -13.708 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.219 4.219 4 C -0.150 4.150 5 H 0.135 0.865 6 C -0.123 4.123 7 C -0.146 4.146 8 C -0.184 4.184 9 C 0.016 3.984 10 H 0.085 0.915 11 N -0.294 5.294 12 C -0.005 4.005 13 C 0.029 3.971 14 C -0.526 4.526 15 H 0.067 0.933 16 C -0.170 4.170 17 N -0.544 5.544 18 Si 0.766 3.234 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.215 4.215 23 C -0.223 4.223 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.158 0.842 36 H 0.020 0.980 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.692 2.121 -13.634 14.284 hybrid contribution 1.669 0.331 1.136 2.046 sum -2.022 2.452 -12.498 12.896 Atomic orbital electron populations 1.21295 0.91880 1.01597 1.01608 1.20900 0.95289 0.95013 0.98827 1.23161 1.02386 0.94293 1.02075 1.22448 0.98758 1.02683 0.91103 0.86475 1.21062 0.94481 0.95843 1.00925 1.21494 1.01753 0.98054 0.93348 1.22249 0.97815 1.00459 0.97897 1.20777 0.92935 0.96494 0.88211 0.91532 1.60405 1.55213 1.12788 1.00990 1.21118 0.96259 0.90206 0.92946 1.18971 0.93650 0.93666 0.90802 1.20486 0.96120 0.95850 1.40155 0.93345 1.25533 0.97511 0.97714 0.96227 1.70086 1.05264 1.30811 1.48210 0.85906 0.76951 0.80853 0.79662 1.20363 1.21517 1.19610 1.22513 1.03151 0.95953 0.99844 1.22959 0.91468 1.04142 1.03735 0.93109 0.92236 0.91888 0.88602 0.90788 0.89557 0.92223 0.91291 0.91424 0.93305 0.94051 0.84203 0.97999 0.93684 0.93450 0.92538 0.91122 0.89540 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.67 71.98 0.70 -2.12 16 2 C -0.10 -2.83 2.16 -53.02 -0.11 -2.94 16 3 C -0.18 -5.01 9.21 30.59 0.28 -4.73 16 4 C -0.13 -3.03 5.83 -10.97 -0.06 -3.10 16 5 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 6 C -0.09 -1.84 5.83 30.46 0.18 -1.66 16 7 C -0.11 -2.64 5.93 30.65 0.18 -2.46 16 8 C -0.14 -4.68 4.94 30.65 0.15 -4.53 16 9 C 0.13 4.20 2.05 44.57 0.09 4.30 16 10 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 11 N -0.66 -27.29 5.90 -493.37 -2.91 -30.20 16 12 C 0.12 5.60 5.62 86.30 0.49 6.09 16 13 C 0.03 1.46 1.68 -52.90 -0.09 1.37 16 14 C -0.49 -26.21 7.45 25.60 0.19 -26.02 16 15 H 0.05 2.66 7.83 -2.91 -0.02 2.64 16 16 C 0.03 1.63 5.41 84.65 0.46 2.09 16 17 N -0.91 -50.94 13.19 21.45 0.28 -50.66 16 18 Si 0.94 43.37 29.55 68.60 2.03 45.40 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C -0.18 -8.39 9.79 30.59 0.30 -8.10 16 23 C -0.19 -8.15 9.88 30.62 0.30 -7.85 16 24 H 0.05 1.57 7.99 -2.38 -0.02 1.55 16 25 H 0.06 1.41 7.72 -2.39 -0.02 1.39 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.10 2.44 7.91 -2.39 -0.02 2.42 16 28 H 0.07 2.28 7.26 -2.39 -0.02 2.27 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.33 8.06 -2.39 -0.02 1.31 16 31 H 0.07 1.60 8.04 -2.39 -0.02 1.58 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.70 7.01 -2.39 -0.02 1.68 16 34 H 0.04 1.50 7.67 -2.38 -0.02 1.48 16 35 H 0.34 15.63 7.40 -89.70 -0.66 14.97 16 36 H 0.00 0.09 7.65 -2.39 -0.02 0.08 16 37 H 0.04 1.89 7.72 -2.39 -0.02 1.87 16 38 H 0.26 14.01 8.32 -92.71 -0.77 13.23 16 39 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.09 3.37 8.08 -2.38 -0.02 3.35 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -56.20 328.76 2.75 -53.45 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.31 Total: 31.66 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 3.05 Total: -49.64 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.63 Total: -80.86 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -56.20 2.75 -53.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336777191.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.691 kcal (2) G-P(sol) polarization free energy of solvation -56.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds