Wall clock time and date at job start Mon Mar 30 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48498 * 109.46824 * 269.99868 * 3 2 1 5 5 H 1.48498 * 109.46933 * 29.99252 * 3 2 1 6 6 H 1.48498 * 109.47438 * 149.99505 * 3 2 1 7 7 C 1.37884 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 158.58801 * 7 2 1 9 9 C 1.50698 * 120.00120 * 338.59116 * 7 2 1 10 10 C 1.53005 * 115.55069 * 324.30800 * 9 7 2 11 11 N 1.46896 * 109.47401 * 148.45637 * 10 9 7 12 12 C 1.48826 * 111.00194 * 283.50625 * 11 10 9 13 13 C 1.52547 * 105.65810 * 241.16326 * 12 11 10 14 14 H 1.09000 * 110.75613 * 87.13433 * 13 12 11 15 15 C 1.51526 * 116.99487 * 214.25093 * 13 12 11 16 16 C 1.53811 * 107.10479 * 178.24715 * 15 13 12 17 17 C 1.52541 * 111.59489 * 302.67920 * 16 15 13 18 18 C 1.53777 * 111.64883 * 54.10448 * 17 16 15 19 19 C 1.51719 * 107.09707 * 302.31871 * 18 17 16 20 20 H 1.08999 * 110.91411 * 303.37055 * 19 18 17 21 21 C 1.49160 * 111.00007 * 163.22804 * 11 10 9 22 22 C 1.53003 * 117.51933 * 110.00667 * 9 7 2 23 23 C 1.52998 * 117.50189 * 178.63844 * 9 7 2 24 24 H 0.96999 * 119.99655 * 5.44252 * 1 2 3 25 25 H 1.09003 * 109.46875 * 28.45729 * 10 9 7 26 26 H 1.08998 * 109.46819 * 268.45918 * 10 9 7 27 27 H 1.09001 * 110.20796 * 0.21085 * 12 11 10 28 28 H 1.09000 * 110.21134 * 122.11244 * 12 11 10 29 29 H 1.09001 * 109.93045 * 58.85019 * 15 13 12 30 30 H 1.08997 * 109.99994 * 297.68599 * 15 13 12 31 31 H 1.09001 * 109.05543 * 182.13502 * 16 15 13 32 32 H 1.08998 * 109.05719 * 63.22160 * 16 15 13 33 33 H 1.08997 * 109.04293 * 293.54600 * 17 16 15 34 34 H 1.08993 * 108.98484 * 174.62474 * 17 16 15 35 35 H 1.09000 * 109.92310 * 182.92023 * 18 17 16 36 36 H 1.08994 * 109.99806 * 61.75817 * 18 17 16 37 37 H 1.09003 * 110.68098 * 265.77461 * 21 11 10 38 38 H 1.08996 * 110.68647 * 28.95491 * 21 11 10 39 39 H 1.08999 * 117.49573 * 214.97124 * 22 9 7 40 40 H 1.09004 * 117.49614 * 359.97438 * 22 9 7 41 41 H 1.08996 * 117.49328 * 359.97383 * 23 9 7 42 42 H 1.08999 * 117.50323 * 144.99507 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0285 -1.2266 -0.3409 9 6 1.3289 -2.4540 0.4775 10 6 0.3503 -2.2783 1.6404 11 7 -0.7279 -3.2695 1.5271 12 6 -1.7057 -2.8762 0.4763 13 6 -3.0393 -2.7069 1.1975 14 1 -3.1397 -1.6956 1.5914 15 6 -4.2890 -3.0912 0.4316 16 6 -5.4831 -2.8751 1.3767 17 6 -5.3351 -3.6830 2.6621 18 6 -3.9956 -3.3969 3.3610 19 6 -2.8958 -3.7246 2.3685 20 1 -2.9784 -4.7549 2.0224 21 6 -1.4639 -3.4086 2.8170 22 6 0.9971 -3.5184 -0.5704 23 6 2.1364 -3.7524 0.4237 24 1 -0.4849 0.8363 -0.0797 25 1 -0.0740 -1.2748 1.6098 26 1 0.8776 -2.4212 2.5836 27 1 -1.4049 -1.9355 0.0152 28 1 -1.7825 -3.6587 -0.2785 29 1 -4.2353 -4.1385 0.1344 30 1 -4.3945 -2.4599 -0.4506 31 1 -6.3985 -3.1789 0.8688 32 1 -5.5514 -1.8166 1.6276 33 1 -5.3920 -4.7449 2.4233 34 1 -6.1508 -3.4264 3.3380 35 1 -3.8967 -4.0253 4.2461 36 1 -3.9397 -2.3457 3.6438 37 1 -1.0553 -4.2290 3.4069 38 1 -1.4338 -2.4758 3.3800 39 1 0.0817 -4.0934 -0.4311 40 1 1.2671 -3.3073 -1.6051 41 1 3.1561 -3.6954 0.0430 42 1 1.9706 -4.4815 1.2169 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381821019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:47 Heat of formation + Delta-G solvation = 20.881232 kcal Electronic energy + Delta-G solvation = -19467.053460 eV Core-core repulsion = 16833.082024 eV Total energy + Delta-G solvation = -2633.971436 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67551 -36.90624 -34.59720 -32.15337 -31.24901 -29.96494 -26.76933 -26.01302 -24.88684 -22.00836 -21.17938 -20.55447 -20.03774 -19.62346 -18.50410 -16.07024 -15.01794 -14.87417 -14.62908 -14.47169 -14.17802 -13.79687 -13.41345 -12.83352 -12.50059 -12.32504 -12.15582 -11.65934 -11.55182 -11.26297 -11.12433 -10.99685 -10.80739 -10.77942 -10.57866 -10.41981 -10.29334 -10.17720 -9.80183 -9.77067 -9.40656 -9.08681 -9.00895 -8.50731 -7.90625 -7.24230 -6.05408 -4.00799 3.25882 3.34599 3.40753 4.37537 4.72516 4.80315 4.88651 4.97963 5.08558 5.37408 5.45699 5.56397 5.62033 5.69183 5.72655 5.79656 5.93488 5.99705 6.11531 6.14134 6.20865 6.23301 6.32052 6.39907 6.42651 6.44751 6.57553 6.60698 6.71279 6.77320 6.94785 6.96403 7.01794 7.21087 7.28373 7.47926 7.56187 7.66239 7.88514 8.10987 8.13470 8.60642 8.92890 9.52462 10.93852 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.006767 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.128715 B = 4136.684476 C = 4611.589474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.073 3.927 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.055 3.945 10 C 0.078 3.922 11 N -0.524 5.524 12 C 0.045 3.955 13 C -0.110 4.110 14 H 0.068 0.932 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.101 4.101 20 H 0.078 0.922 21 C 0.047 3.953 22 C -0.193 4.193 23 C -0.207 4.207 24 H 0.261 0.739 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -5.111 4.560 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.050 4.050 11 N -0.248 5.248 12 C -0.082 4.082 13 C -0.130 4.130 14 H 0.087 0.913 15 C -0.141 4.141 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.120 4.120 20 H 0.096 0.904 21 C -0.081 4.081 22 C -0.231 4.231 23 C -0.245 4.245 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.125 0.875 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.751 -5.433 4.506 12.038 hybrid contribution 0.144 1.581 0.167 1.597 sum -9.607 -3.852 4.673 11.356 Atomic orbital electron populations 1.69852 1.06064 1.26678 1.48198 1.24921 0.94634 0.98919 0.94481 0.86719 0.80441 0.83501 0.78199 1.20755 1.21133 1.19741 1.20585 0.98436 0.90880 1.42977 0.92212 1.18900 0.94693 0.87399 0.93604 1.21920 0.91290 0.95800 0.95949 1.64462 1.09972 1.47267 1.03089 1.22806 0.88480 1.02663 0.94289 1.22196 0.95472 0.98531 0.96788 0.91333 1.21295 0.94008 1.01150 0.97670 1.21542 0.98002 1.00146 0.95766 1.21502 0.97097 1.00060 0.96562 1.21372 0.94274 1.01204 0.97554 1.22133 0.93882 0.99523 0.96507 0.90356 1.22797 0.92537 0.99415 0.93314 1.22985 0.97961 1.07487 0.94643 1.22776 0.95034 1.03561 1.03107 0.92936 0.89617 0.94534 0.87505 0.92489 0.92069 0.91976 0.92624 0.92445 0.92436 0.92681 0.92332 0.92044 0.91642 0.94332 0.89793 0.91923 0.91716 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.17 9.77 55.43 0.54 -22.62 16 2 C 0.07 1.94 4.95 -17.82 -0.09 1.85 16 3 Si 0.88 20.60 29.59 -169.99 -5.03 15.57 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.49 -13.44 8.98 -34.44 -0.31 -13.75 16 8 H 0.06 1.65 7.90 -52.49 -0.41 1.24 16 9 C 0.05 1.38 2.17 -155.66 -0.34 1.05 16 10 C 0.08 1.84 4.51 -3.82 -0.02 1.82 16 11 N -0.52 -10.77 4.16 -231.05 -0.96 -11.73 16 12 C 0.05 0.90 4.86 -2.99 -0.01 0.89 16 13 C -0.11 -1.82 2.32 -90.10 -0.21 -2.03 16 14 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 15 C -0.10 -1.44 5.68 -27.05 -0.15 -1.59 16 16 C -0.12 -1.39 5.84 -26.54 -0.15 -1.54 16 17 C -0.11 -1.29 5.84 -26.56 -0.16 -1.44 16 18 C -0.11 -1.34 5.68 -26.98 -0.15 -1.49 16 19 C -0.10 -1.53 2.52 -89.60 -0.23 -1.75 16 20 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 21 C 0.05 0.82 6.23 -2.39 -0.01 0.81 16 22 C -0.19 -4.59 8.93 -26.73 -0.24 -4.83 16 23 C -0.21 -4.81 9.94 -26.73 -0.27 -5.07 16 24 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 25 H 0.09 2.22 5.07 -51.93 -0.26 1.96 16 26 H 0.04 0.85 7.99 -51.93 -0.41 0.43 16 27 H 0.11 2.52 5.93 -51.93 -0.31 2.21 16 28 H 0.06 1.14 7.10 -51.93 -0.37 0.77 16 29 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.81 7.98 -51.93 -0.41 0.39 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 39 H 0.08 1.93 5.25 -51.93 -0.27 1.66 16 40 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -26.33 312.19 -10.56 -36.90 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.48 Total: 4.27 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.34 Total: -27.09 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.42 Total: -34.36 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.33 -10.56 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381821019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.776 kcal (2) G-P(sol) polarization free energy of solvation -26.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds