Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48497 * 109.46950 * 269.99301 * 3 2 1 5 5 H 1.48501 * 109.47314 * 29.99774 * 3 2 1 6 6 H 1.48507 * 109.46804 * 149.99577 * 3 2 1 7 7 C 1.37877 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99820 * 171.33758 * 7 2 1 9 9 C 1.50702 * 119.99613 * 351.34138 * 7 2 1 10 10 C 1.52997 * 115.55128 * 326.07492 * 9 7 2 11 11 N 1.46899 * 109.47326 * 305.74047 * 10 9 7 12 12 C 1.49159 * 110.99959 * 289.30566 * 11 10 9 13 13 C 1.53327 * 103.12960 * 212.63540 * 12 11 10 14 14 H 1.09003 * 111.53192 * 285.19339 * 13 12 11 15 15 C 1.51717 * 116.18440 * 156.76326 * 13 12 11 16 16 C 1.53773 * 107.09740 * 184.58949 * 15 13 12 17 17 C 1.52545 * 111.64655 * 57.67952 * 16 15 13 18 18 C 1.53803 * 111.59639 * 305.89882 * 17 16 15 19 19 C 1.51524 * 107.11301 * 57.32018 * 18 17 16 20 20 H 1.09010 * 109.99674 * 55.31678 * 19 18 17 21 21 C 1.48824 * 110.99861 * 169.03367 * 11 10 9 22 22 C 1.52995 * 117.49745 * 111.75522 * 9 7 2 23 23 C 1.52999 * 117.49618 * 180.41223 * 9 7 2 24 24 H 0.96997 * 120.00031 * 5.02771 * 1 2 3 25 25 H 1.09005 * 109.46687 * 65.74087 * 10 9 7 26 26 H 1.09002 * 109.47213 * 185.73218 * 10 9 7 27 27 H 1.09003 * 110.68467 * 331.04447 * 12 11 10 28 28 H 1.08997 * 110.68172 * 94.22211 * 12 11 10 29 29 H 1.09005 * 109.92536 * 65.19865 * 15 13 12 30 30 H 1.08997 * 109.99986 * 304.02949 * 15 13 12 31 31 H 1.08998 * 109.04577 * 297.12585 * 16 15 13 32 32 H 1.08998 * 109.04742 * 178.23791 * 16 15 13 33 33 H 1.08997 * 109.05353 * 185.35021 * 17 16 15 34 34 H 1.09005 * 109.04991 * 66.44008 * 17 16 15 35 35 H 1.08998 * 109.92841 * 297.91631 * 18 17 16 36 36 H 1.09006 * 109.92366 * 176.71999 * 18 17 16 37 37 H 1.08996 * 110.20891 * 237.88412 * 21 11 10 38 38 H 1.08998 * 110.20943 * 359.71204 * 21 11 10 39 39 H 1.09005 * 117.49747 * 214.99981 * 22 9 7 40 40 H 1.08998 * 117.49931 * 0.02562 * 22 9 7 41 41 H 1.09008 * 117.49884 * 359.97314 * 23 9 7 42 42 H 1.08998 * 117.50417 * 144.96918 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0754 -1.1993 -0.1403 9 6 1.2639 -2.4916 0.1976 10 6 0.0538 -2.4254 1.1314 11 7 0.4631 -1.8604 2.4241 12 6 1.3178 -2.8206 3.1806 13 6 0.9592 -2.5290 4.6426 14 1 1.4084 -1.5973 4.9866 15 6 1.2152 -3.6510 5.6313 16 6 0.6794 -3.1832 6.9946 17 6 -0.8021 -2.8269 6.9247 18 6 -1.0853 -1.7982 5.8170 19 6 -0.5881 -2.3954 4.5162 20 1 -1.0508 -3.3687 4.3519 21 6 -0.7222 -1.5354 3.2634 22 6 1.1855 -3.4482 -0.9938 23 6 2.0866 -3.7816 0.1978 24 1 -0.4850 0.8368 -0.0736 25 1 -0.7148 -1.7939 0.6858 26 1 -0.3436 -3.4291 1.2829 27 1 1.0657 -3.8485 2.9200 28 1 2.3739 -2.6235 2.9965 29 1 2.2851 -3.8483 5.7004 30 1 0.6910 -4.5529 5.3156 31 1 1.2414 -2.3062 7.3157 32 1 0.8194 -3.9806 7.7244 33 1 -1.1140 -2.4125 7.8834 34 1 -1.3767 -3.7315 6.7256 35 1 -0.5535 -0.8702 6.0269 36 1 -2.1566 -1.6071 5.7525 37 1 -0.7165 -0.4785 3.5298 38 1 -1.6402 -1.7842 2.7309 39 1 0.2717 -4.0305 -1.1125 40 1 1.6700 -3.1393 -1.9200 41 1 3.1636 -3.6917 0.0549 42 1 1.7660 -4.5830 0.8634 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381821022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = 6.387039 kcal Electronic energy + Delta-G solvation = -19475.470337 eV Core-core repulsion = 16840.870385 eV Total energy + Delta-G solvation = -2634.599952 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99404 -38.55873 -36.19281 -34.01859 -32.44018 -31.39816 -28.11090 -27.58631 -26.65865 -23.28677 -22.94435 -21.90323 -21.46035 -20.96628 -20.58534 -18.06500 -16.61491 -16.18366 -16.10993 -15.72950 -15.47119 -15.16762 -14.91175 -14.57308 -14.17729 -13.69577 -13.63188 -13.14924 -13.00352 -12.82300 -12.73554 -12.68613 -12.34153 -12.29109 -12.15673 -11.90416 -11.84006 -11.64381 -11.35821 -11.09946 -11.00122 -10.86593 -10.65495 -10.45944 -9.88375 -8.72185 -7.86948 -5.96660 1.43613 1.47581 1.55618 2.51672 3.11898 3.40848 3.52334 3.75973 3.78916 3.90011 4.19264 4.31238 4.36770 4.43676 4.50045 4.52621 4.60323 4.64259 4.69363 4.72046 4.80260 4.83759 4.91615 4.96664 5.01120 5.07178 5.09806 5.16006 5.20225 5.29208 5.29936 5.38909 5.40248 5.43023 5.48269 5.55203 5.65452 5.68675 6.08651 6.42776 6.56351 6.70652 7.02535 7.64231 9.11024 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.007338 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.348862 B = 3815.082923 C = 4327.862747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.053 3.947 3 Si 0.941 3.059 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.492 4.492 8 H 0.038 0.962 9 C 0.039 3.961 10 C 0.115 3.885 11 N -0.510 5.510 12 C 0.060 3.940 13 C -0.092 4.092 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.101 4.101 19 C -0.105 4.105 20 H 0.067 0.933 21 C 0.057 3.943 22 C -0.210 4.210 23 C -0.194 4.194 24 H 0.255 0.745 25 H 0.087 0.913 26 H -0.014 1.014 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -5.925 13.439 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.148 4.148 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.013 4.013 11 N -0.232 5.232 12 C -0.067 4.067 13 C -0.111 4.111 14 H 0.090 0.910 15 C -0.139 4.139 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.124 4.124 20 H 0.085 0.915 21 C -0.070 4.070 22 C -0.249 4.249 23 C -0.232 4.232 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.004 0.996 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.946 -5.321 13.386 14.536 hybrid contribution 0.046 0.207 -0.600 0.636 sum -1.901 -5.114 12.786 13.902 Atomic orbital electron populations 1.69899 1.06663 1.26262 1.49914 1.25262 0.95250 1.00672 0.93634 0.85848 0.78869 0.80906 0.77534 1.20751 1.21165 1.20271 1.20439 0.92336 0.90648 1.49545 0.94400 1.19066 0.94725 0.88521 0.93893 1.21624 0.97375 0.93128 0.89194 1.64103 1.16043 1.40908 1.02190 1.22751 0.97764 0.93392 0.92811 1.22098 0.95502 0.99715 0.93821 0.90953 1.21354 1.01181 0.96713 0.94688 1.21511 0.95889 1.01411 0.96280 1.21515 0.96424 0.98643 0.98388 1.21314 1.00827 0.98596 0.93191 1.22128 0.96510 0.99056 0.94725 0.91493 1.22468 0.92317 0.99133 0.93121 1.22977 1.00539 1.07561 0.93823 1.22863 0.96625 1.01664 1.02006 0.93575 0.89498 0.99614 0.94907 0.92690 0.91386 0.91948 0.92214 0.90558 0.90654 0.92048 0.92140 0.91466 0.92845 0.94401 0.90821 0.91228 0.91006 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.89 10.61 21.45 0.23 -49.66 16 2 C 0.05 2.93 5.15 84.65 0.44 3.37 16 3 Si 0.94 44.83 29.55 68.60 2.03 46.86 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.49 -27.56 8.75 25.60 0.22 -27.34 16 8 H 0.04 2.16 7.83 -2.91 -0.02 2.14 16 9 C 0.04 1.95 1.73 -52.93 -0.09 1.86 16 10 C 0.11 5.55 3.67 86.30 0.32 5.87 16 11 N -0.51 -22.66 4.77 -884.94 -4.22 -26.89 16 12 C 0.06 2.30 5.32 85.97 0.46 2.76 16 13 C -0.09 -2.79 2.53 -10.13 -0.03 -2.81 16 14 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 15 C -0.10 -2.35 5.68 30.43 0.17 -2.18 16 16 C -0.11 -2.13 5.84 30.70 0.18 -1.95 16 17 C -0.11 -2.09 5.84 30.71 0.18 -1.91 16 18 C -0.10 -2.38 5.68 30.38 0.17 -2.21 16 19 C -0.10 -3.10 2.29 -10.45 -0.02 -3.12 16 20 H 0.07 1.97 7.99 -2.38 -0.02 1.95 16 21 C 0.06 2.20 6.56 85.78 0.56 2.77 16 22 C -0.21 -9.76 9.96 30.62 0.30 -9.46 16 23 C -0.19 -8.56 9.32 30.62 0.29 -8.28 16 24 H 0.25 13.80 8.32 -92.71 -0.77 13.03 16 25 H 0.09 4.71 5.80 -2.38 -0.01 4.69 16 26 H -0.01 -0.65 7.78 -2.39 -0.02 -0.66 16 27 H 0.03 1.23 7.26 -2.39 -0.02 1.21 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.06 1.43 8.02 -2.39 -0.02 1.41 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.48 8.05 -2.39 -0.02 1.46 16 36 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.05 2.14 8.07 -2.39 -0.02 2.13 16 38 H 0.04 1.49 7.55 -2.39 -0.02 1.47 16 39 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 40 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 42 H 0.08 3.20 7.74 -2.39 -0.02 3.18 16 Total: -1.00 -58.54 318.45 2.13 -56.41 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.95 Total: 15.92 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 3.15 Total: -42.64 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -3.99 Total: -76.55 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -58.54 2.13 -56.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381821022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.795 kcal (2) G-P(sol) polarization free energy of solvation -58.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds