Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48502 * 109.47333 * 240.00447 * 3 2 1 5 5 H 1.48499 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47183 * 120.00294 * 3 2 1 7 7 C 1.37880 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00104 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.43415 * 57.46080 * 9 7 2 11 11 C 1.54888 * 110.60177 * 294.84647 * 9 7 2 12 12 C 1.54888 * 102.75258 * 203.32121 * 11 9 7 13 13 C 1.54272 * 104.19201 * 37.93980 * 12 11 9 14 14 H 1.09005 * 110.06714 * 95.69890 * 13 12 11 15 15 N 1.46899 * 110.03183 * 217.10305 * 13 12 11 16 16 C 1.46891 * 111.00210 * 272.17097 * 15 13 12 17 17 C 1.53008 * 109.47191 * 180.02562 * 16 15 13 18 18 H 1.08994 * 109.64067 * 55.41519 * 17 16 15 19 19 C 1.53024 * 109.63814 * 294.99860 * 17 16 15 20 20 C 1.50070 * 110.03521 * 190.94793 * 19 17 16 21 21 C 1.29172 * 124.28199 * 17.04512 * 20 19 17 22 22 C 1.50070 * 123.99416 * 359.61667 * 21 20 19 23 23 C 1.53019 * 110.14796 * 17.08522 * 22 21 20 24 24 C 1.53874 * 106.59901 * 336.39043 * 13 12 11 25 25 H 0.96999 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.09000 * 110.75456 * 321.64118 * 11 9 7 27 27 H 1.09011 * 110.75616 * 85.00623 * 11 9 7 28 28 H 1.09000 * 110.48729 * 279.26678 * 12 11 9 29 29 H 1.08998 * 110.48762 * 156.61934 * 12 11 9 30 30 H 1.00901 * 110.99543 * 36.12729 * 15 13 12 31 31 H 1.09000 * 109.47349 * 60.00177 * 16 15 13 32 32 H 1.09000 * 109.47171 * 300.00056 * 16 15 13 33 33 H 1.09002 * 109.35972 * 311.08657 * 19 17 16 34 34 H 1.08998 * 109.35954 * 70.81421 * 19 17 16 35 35 H 1.08001 * 117.96524 * 197.04376 * 20 19 17 36 36 H 1.07999 * 118.04447 * 179.55051 * 21 20 19 37 37 H 1.09002 * 109.35816 * 256.88395 * 22 21 20 38 38 H 1.08997 * 109.36315 * 137.29615 * 22 21 20 39 39 H 1.08997 * 109.64626 * 190.88377 * 23 22 21 40 40 H 1.09000 * 109.64655 * 70.24857 * 23 22 21 41 41 H 1.09010 * 110.02760 * 119.28387 * 24 13 12 42 42 H 1.08996 * 110.03394 * 240.66558 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5847 -2.5539 -0.8614 11 6 0.4516 -2.6669 1.3154 12 6 0.2734 -4.2023 1.4138 13 6 1.6111 -4.7721 0.8982 14 1 2.2740 -4.9872 1.7363 15 7 1.3707 -5.9950 0.1205 16 6 1.3542 -7.1779 0.9913 17 6 1.1024 -8.4291 0.1473 18 1 1.8479 -8.4924 -0.6453 19 6 -0.2974 -8.3618 -0.4673 20 6 -0.6579 -9.6873 -1.0713 21 6 -0.0526 -10.7970 -0.8052 22 6 1.1052 -10.9149 0.1423 23 6 1.1822 -9.6760 1.0372 24 6 2.2327 -3.6892 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.0212 -2.2888 2.1643 27 1 -0.5159 -2.1694 1.2456 28 1 -0.5508 -4.5321 0.7814 29 1 0.1049 -4.5012 2.4484 30 1 0.5150 -5.9241 -0.4094 31 1 0.5611 -7.0730 1.7317 32 1 2.3148 -7.2693 1.4983 33 1 -1.0207 -8.1093 0.3081 34 1 -0.3155 -7.5950 -1.2417 35 1 -1.4768 -9.7174 -1.7748 36 1 -0.4011 -11.6952 -1.2932 37 1 2.0301 -11.0073 -0.4270 38 1 0.9753 -11.8014 0.7631 39 1 2.1254 -9.6765 1.5834 40 1 0.3486 -9.6788 1.7395 41 1 3.1969 -3.3782 0.4011 42 1 2.3568 -4.0713 -1.0144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382040442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -18.403080 kcal Electronic energy + Delta-G solvation = -18224.114463 eV Core-core repulsion = 15588.439531 eV Total energy + Delta-G solvation = -2635.674932 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07805 -37.58039 -34.43843 -32.34359 -31.04930 -30.42344 -28.00354 -26.72990 -24.68164 -23.53815 -22.68268 -20.86157 -19.63654 -18.74045 -17.99929 -16.48189 -16.17177 -15.11878 -15.02710 -14.48775 -14.21627 -13.82398 -13.57476 -13.23219 -12.92870 -12.59023 -12.43601 -12.31109 -12.05586 -11.67669 -11.57591 -11.00870 -10.96074 -10.70577 -10.66184 -10.61663 -10.38998 -10.18398 -9.93966 -9.72357 -9.46809 -9.10815 -9.06214 -8.73285 -8.29625 -7.89282 -5.94727 -3.96834 2.19714 3.35658 3.40023 3.42923 4.43251 4.49463 4.61519 4.65207 4.96466 5.11530 5.20483 5.28630 5.37297 5.44359 5.49289 5.54873 5.66354 5.72275 5.74747 5.81675 5.89698 5.91156 5.97185 6.04034 6.14167 6.29051 6.41440 6.56044 6.59545 6.67050 6.78620 6.85215 6.92997 7.15469 7.23076 7.39639 7.63579 7.76463 7.82036 7.95924 8.10454 8.54136 9.06330 9.66690 11.14774 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.055441 B = 0.003724 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.919060 B = 7516.810578 C = 7627.297043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.098 4.098 12 C -0.154 4.154 13 C 0.084 3.916 14 H 0.064 0.936 15 N -0.685 5.685 16 C 0.064 3.936 17 C -0.085 4.085 18 H 0.081 0.919 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.164 4.164 22 C -0.089 4.089 23 C -0.114 4.114 24 C -0.106 4.106 25 H 0.259 0.741 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.338 0.662 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -19.055 1.430 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.047 0.953 11 C -0.137 4.137 12 C -0.194 4.194 13 C -0.025 4.025 14 H 0.082 0.918 15 N -0.316 5.316 16 C -0.066 4.066 17 C -0.104 4.104 18 H 0.099 0.901 19 C -0.128 4.128 20 C -0.166 4.166 21 C -0.182 4.182 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.144 4.144 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.069 -19.013 1.248 19.054 hybrid contribution -0.573 1.009 0.454 1.246 sum -0.503 -18.004 1.702 18.092 Atomic orbital electron populations 1.69954 1.05870 1.26393 1.50832 1.24990 0.94828 0.98957 0.95249 0.86722 0.79636 0.83428 0.78569 1.20324 1.21424 1.20359 1.21198 0.92721 0.90663 1.50382 0.92775 1.19448 0.92640 0.91567 0.93487 0.95327 1.22389 1.01230 0.90054 0.99984 1.23150 0.96903 1.00517 0.98799 1.22323 0.95999 0.89093 0.95114 0.91755 1.60782 1.42054 1.02121 1.26594 1.21997 1.00267 0.90012 0.94326 1.21244 0.97194 0.93803 0.98175 0.90104 1.20559 0.96719 0.95414 1.00121 1.22017 0.99874 0.94738 0.99942 1.21946 0.98379 0.97743 1.00104 1.20428 0.97172 0.98203 0.96832 1.21621 1.01912 0.94060 0.97662 1.22294 0.99344 0.94791 0.97999 0.93153 0.93464 0.91741 0.92944 0.93929 0.84303 0.95653 0.91437 0.91090 0.90492 0.88262 0.88352 0.91002 0.91424 0.91613 0.91943 0.92870 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 12.29 55.43 0.68 -25.26 16 2 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 8 H 0.05 1.49 7.55 -52.48 -0.40 1.09 16 9 C 0.05 1.19 2.71 -90.12 -0.24 0.94 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.10 -2.29 5.75 -24.74 -0.14 -2.44 16 12 C -0.15 -2.91 6.46 -25.07 -0.16 -3.07 16 13 C 0.08 1.52 3.23 -66.59 -0.22 1.30 16 14 H 0.06 1.13 7.81 -51.93 -0.41 0.73 16 15 N -0.68 -10.58 6.17 -105.54 -0.65 -11.23 16 16 C 0.06 0.82 4.98 -3.82 -0.02 0.80 16 17 C -0.09 -0.95 2.45 -90.40 -0.22 -1.17 16 18 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 19 C -0.09 -0.99 4.95 -28.18 -0.14 -1.13 16 20 C -0.15 -1.49 9.78 -35.83 -0.35 -1.84 16 21 C -0.16 -1.54 9.80 -35.83 -0.35 -1.89 16 22 C -0.09 -0.78 6.12 -28.18 -0.17 -0.95 16 23 C -0.11 -1.09 5.31 -26.52 -0.14 -1.23 16 24 C -0.11 -2.26 6.15 -25.62 -0.16 -2.41 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 27 H 0.06 1.64 7.56 -51.92 -0.39 1.25 16 28 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.34 5.15 6.62 -39.29 -0.26 4.89 16 31 H 0.03 0.33 8.11 -51.93 -0.42 -0.09 16 32 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.07 0.77 8.08 -51.93 -0.42 0.36 16 34 H 0.08 0.87 7.20 -51.93 -0.37 0.50 16 35 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.05 1.15 7.66 -51.92 -0.40 0.75 16 42 H 0.05 1.15 7.92 -51.93 -0.41 0.73 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -28.17 324.40 -10.45 -38.62 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.65 Total: 2.44 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.70 Total: -26.00 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.03 Total: -36.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.17 -10.45 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.215 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds