Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99912 * 2 1 4 4 H 1.48502 * 109.47333 * 240.00447 * 3 2 1 5 5 H 1.48499 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47183 * 120.00294 * 3 2 1 7 7 C 1.37880 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00104 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.43415 * 57.46080 * 9 7 2 11 11 C 1.54888 * 110.60177 * 294.84647 * 9 7 2 12 12 C 1.54888 * 102.75258 * 203.32121 * 11 9 7 13 13 C 1.54272 * 104.19201 * 37.93980 * 12 11 9 14 14 H 1.09005 * 110.06714 * 95.69890 * 13 12 11 15 15 N 1.46899 * 110.03183 * 217.10305 * 13 12 11 16 16 C 1.46891 * 111.00210 * 272.17097 * 15 13 12 17 17 C 1.53008 * 109.47191 * 180.02562 * 16 15 13 18 18 H 1.08994 * 109.64067 * 55.41519 * 17 16 15 19 19 C 1.53024 * 109.63814 * 294.99860 * 17 16 15 20 20 C 1.50070 * 110.03521 * 190.94793 * 19 17 16 21 21 C 1.29172 * 124.28199 * 17.04512 * 20 19 17 22 22 C 1.50070 * 123.99416 * 359.61667 * 21 20 19 23 23 C 1.53019 * 110.14796 * 17.08522 * 22 21 20 24 24 C 1.53874 * 106.59901 * 336.39043 * 13 12 11 25 25 H 0.96999 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.09000 * 110.75456 * 321.64118 * 11 9 7 27 27 H 1.09011 * 110.75616 * 85.00623 * 11 9 7 28 28 H 1.09000 * 110.48729 * 279.26678 * 12 11 9 29 29 H 1.08998 * 110.48762 * 156.61934 * 12 11 9 30 30 H 1.00901 * 110.99543 * 36.12729 * 15 13 12 31 31 H 1.09000 * 109.47349 * 60.00177 * 16 15 13 32 32 H 1.09000 * 109.47171 * 300.00056 * 16 15 13 33 33 H 1.09002 * 109.35972 * 311.08657 * 19 17 16 34 34 H 1.08998 * 109.35954 * 70.81421 * 19 17 16 35 35 H 1.08001 * 117.96524 * 197.04376 * 20 19 17 36 36 H 1.07999 * 118.04447 * 179.55051 * 21 20 19 37 37 H 1.09002 * 109.35816 * 256.88395 * 22 21 20 38 38 H 1.08997 * 109.36315 * 137.29615 * 22 21 20 39 39 H 1.08997 * 109.64626 * 190.88377 * 23 22 21 40 40 H 1.09000 * 109.64655 * 70.24857 * 23 22 21 41 41 H 1.09010 * 110.02760 * 119.28387 * 24 13 12 42 42 H 1.08996 * 110.03394 * 240.66558 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5847 -2.5539 -0.8614 11 6 0.4516 -2.6669 1.3154 12 6 0.2734 -4.2023 1.4138 13 6 1.6111 -4.7721 0.8982 14 1 2.2740 -4.9872 1.7363 15 7 1.3707 -5.9950 0.1205 16 6 1.3542 -7.1779 0.9913 17 6 1.1024 -8.4291 0.1473 18 1 1.8479 -8.4924 -0.6453 19 6 -0.2974 -8.3618 -0.4673 20 6 -0.6579 -9.6873 -1.0713 21 6 -0.0526 -10.7970 -0.8052 22 6 1.1052 -10.9149 0.1423 23 6 1.1822 -9.6760 1.0372 24 6 2.2327 -3.6892 -0.0011 25 1 -0.4850 0.8400 0.0004 26 1 1.0212 -2.2888 2.1643 27 1 -0.5159 -2.1694 1.2456 28 1 -0.5508 -4.5321 0.7814 29 1 0.1049 -4.5012 2.4484 30 1 0.5150 -5.9241 -0.4094 31 1 0.5611 -7.0730 1.7317 32 1 2.3148 -7.2693 1.4983 33 1 -1.0207 -8.1093 0.3081 34 1 -0.3155 -7.5950 -1.2417 35 1 -1.4768 -9.7174 -1.7748 36 1 -0.4011 -11.6952 -1.2932 37 1 2.0301 -11.0073 -0.4270 38 1 0.9753 -11.8014 0.7631 39 1 2.1254 -9.6765 1.5834 40 1 0.3486 -9.6788 1.7395 41 1 3.1969 -3.3782 0.4011 42 1 2.3568 -4.0713 -1.0144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382040442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -32.781779 kcal Electronic energy + Delta-G solvation = -18224.737970 eV Core-core repulsion = 15588.439531 eV Total energy + Delta-G solvation = -2636.298439 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06937 -39.01197 -35.86274 -34.15435 -32.01022 -31.44788 -29.81214 -28.28474 -26.05533 -25.11760 -23.58154 -21.78655 -21.35442 -20.46962 -18.78955 -18.51671 -17.05933 -16.60154 -16.42775 -16.22716 -15.20418 -15.07958 -14.62877 -14.36953 -14.19826 -14.09236 -13.82653 -13.42088 -13.19401 -12.99436 -12.94082 -12.74905 -12.62578 -12.38881 -12.21201 -11.85323 -11.56338 -11.47996 -11.35629 -11.26486 -10.99561 -10.83174 -10.79455 -10.43137 -9.84273 -9.18717 -8.10082 -6.19724 1.41491 1.43010 1.46414 1.50554 2.44581 3.19436 3.30393 3.80375 3.85286 3.97227 4.07357 4.16089 4.30483 4.35712 4.45111 4.52410 4.60616 4.72307 4.74936 4.80836 4.86705 4.88305 4.97096 5.00654 5.06775 5.10074 5.12523 5.18509 5.24060 5.30245 5.35736 5.44837 5.49108 5.56484 5.66729 5.82928 5.95246 6.01889 6.11772 6.26795 6.43694 6.56335 6.91822 7.47388 8.98324 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.055441 B = 0.003724 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.919060 B = 7516.810578 C = 7627.297043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.039 3.961 10 H -0.005 1.005 11 C -0.092 4.092 12 C -0.140 4.140 13 C 0.097 3.903 14 H 0.077 0.923 15 N -0.686 5.686 16 C 0.066 3.934 17 C -0.079 4.079 18 H 0.070 0.930 19 C -0.090 4.090 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.098 4.098 25 H 0.259 0.741 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.339 0.661 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -20.613 2.097 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.013 0.987 11 C -0.131 4.131 12 C -0.180 4.180 13 C -0.013 4.013 14 H 0.095 0.905 15 N -0.317 5.317 16 C -0.063 4.063 17 C -0.098 4.098 18 H 0.089 0.911 19 C -0.127 4.127 20 C -0.183 4.183 21 C -0.179 4.179 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.790 -20.591 1.913 20.695 hybrid contribution -0.802 1.466 0.212 1.685 sum -0.012 -19.125 2.125 19.243 Atomic orbital electron populations 1.70086 1.07240 1.27145 1.51548 1.25784 0.95683 1.02437 0.94923 0.85697 0.78438 0.79171 0.78877 1.19680 1.21030 1.19536 1.21596 0.92911 0.92241 1.50374 0.93001 1.19431 0.93087 0.92450 0.93003 0.98653 1.22176 0.99043 0.93396 0.98487 1.23036 0.97769 0.96702 1.00446 1.22071 0.95273 0.89209 0.94736 0.90499 1.60704 1.42340 1.01914 1.26771 1.22059 1.00620 0.89411 0.94245 1.21161 0.96924 0.93788 0.97911 0.91139 1.20519 0.96593 0.95794 0.99837 1.22067 1.00819 0.94612 1.00846 1.22182 0.98069 0.97963 0.99668 1.20483 0.97056 0.98401 0.96847 1.21607 1.02404 0.93461 0.97512 1.22145 0.98220 0.94439 0.98826 0.93191 0.94668 0.94646 0.92369 0.91682 0.84151 0.95266 0.91044 0.91270 0.91489 0.87736 0.87002 0.90575 0.89805 0.90769 0.91882 0.93381 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.80 12.29 21.45 0.26 -54.54 16 2 C 0.01 0.58 5.35 84.65 0.45 1.03 16 3 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.27 8.47 25.60 0.22 -30.05 16 8 H 0.05 2.89 7.55 -2.91 -0.02 2.87 16 9 C 0.04 2.01 2.71 -10.47 -0.03 1.98 16 10 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 11 C -0.09 -4.40 5.75 31.88 0.18 -4.21 16 12 C -0.14 -5.13 6.46 31.67 0.20 -4.93 16 13 C 0.10 3.36 3.23 45.64 0.15 3.51 16 14 H 0.08 2.52 7.81 -2.38 -0.02 2.50 16 15 N -0.69 -20.17 6.17 -487.83 -3.01 -23.18 16 16 C 0.07 1.55 4.98 86.31 0.43 1.98 16 17 C -0.08 -1.61 2.45 -10.65 -0.03 -1.64 16 18 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 19 C -0.09 -1.85 4.95 29.66 0.15 -1.70 16 20 C -0.17 -3.09 9.78 27.30 0.27 -2.82 16 21 C -0.16 -2.66 9.80 27.30 0.27 -2.39 16 22 C -0.09 -1.34 6.12 29.66 0.18 -1.16 16 23 C -0.11 -1.85 5.31 30.73 0.16 -1.68 16 24 C -0.10 -4.16 6.15 31.32 0.19 -3.97 16 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 26 H 0.03 1.72 8.05 -2.39 -0.02 1.70 16 27 H 0.03 1.85 7.56 -2.38 -0.02 1.83 16 28 H 0.06 2.06 7.56 -2.39 -0.02 2.04 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.34 9.97 6.62 -89.69 -0.59 9.38 16 31 H 0.03 0.68 8.11 -2.39 -0.02 0.66 16 32 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 34 H 0.07 1.48 7.20 -2.39 -0.02 1.46 16 35 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.11 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 41 H 0.05 2.06 7.66 -2.38 -0.02 2.04 16 42 H 0.05 2.24 7.92 -2.39 -0.02 2.22 16 Total: -1.00 -60.68 324.40 2.44 -58.24 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.37 Total: 18.97 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 2.80 Total: -46.07 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.75 Total: -77.72 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.68 2.44 -58.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.458 kcal (2) G-P(sol) polarization free energy of solvation -60.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds