Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.01720 * 58.61242 * 9 7 2 11 11 C 1.54269 * 110.03161 * 297.16208 * 9 7 2 12 12 C 1.54883 * 104.19587 * 217.10721 * 11 9 7 13 13 C 1.54885 * 102.75261 * 37.94646 * 12 11 9 14 14 H 1.09003 * 110.48809 * 80.73129 * 13 12 11 15 15 N 1.46894 * 110.60224 * 203.32763 * 13 12 11 16 16 C 1.46906 * 110.99579 * 269.83829 * 15 13 12 17 17 C 1.52994 * 109.47219 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.64412 * 304.58000 * 17 16 15 19 19 C 1.53026 * 109.64386 * 64.99989 * 17 16 15 20 20 C 1.50067 * 110.14839 * 169.12316 * 19 17 16 21 21 C 1.29440 * 124.07707 * 342.87052 * 20 19 17 22 22 C 1.50070 * 124.07494 * 0.48413 * 21 20 19 23 23 C 1.53034 * 110.14046 * 342.84246 * 22 21 20 24 24 C 1.53872 * 110.02873 * 179.97438 * 9 7 2 25 25 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 26 26 H 1.08996 * 110.48844 * 335.78844 * 11 9 7 27 27 H 1.09007 * 110.47931 * 98.42621 * 11 9 7 28 28 H 1.09003 * 110.75647 * 279.63231 * 12 11 9 29 29 H 1.09002 * 110.91654 * 156.33403 * 12 11 9 30 30 H 1.00895 * 111.00576 * 145.88691 * 15 13 12 31 31 H 1.09000 * 109.46961 * 299.99635 * 16 15 13 32 32 H 1.08991 * 109.47248 * 59.99739 * 16 15 13 33 33 H 1.09002 * 109.35555 * 289.33015 * 19 17 16 34 34 H 1.08992 * 109.35750 * 48.91391 * 19 17 16 35 35 H 1.08002 * 117.96392 * 162.84613 * 20 19 17 36 36 H 1.08002 * 117.96473 * 180.47638 * 21 20 19 37 37 H 1.09007 * 109.35278 * 103.05649 * 22 21 20 38 38 H 1.08993 * 109.36303 * 222.78071 * 22 21 20 39 39 H 1.09002 * 109.65455 * 289.77501 * 23 22 21 40 40 H 1.09000 * 109.63957 * 169.13691 * 23 22 21 41 41 H 1.09004 * 110.03478 * 238.56737 * 24 9 7 42 42 H 1.08997 * 110.03759 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6029 -2.5557 -0.8740 11 6 0.4133 -2.6256 1.2898 12 6 0.5047 -4.1277 1.6562 13 6 1.9679 -4.4804 1.2908 14 1 2.6456 -4.1669 2.0848 15 7 2.1047 -5.9211 1.0386 16 6 2.4393 -6.6422 2.2739 17 6 2.5740 -8.1360 1.9719 18 1 1.6607 -8.4982 1.4998 19 6 3.7628 -8.3666 1.0363 20 6 4.0702 -9.8324 0.9426 21 6 3.6455 -10.7179 1.7859 22 6 2.7779 -10.4037 2.9694 23 6 2.8260 -8.9050 3.2750 24 6 2.2395 -3.6784 0.0005 25 1 -0.4850 -0.8401 0.0004 26 1 0.8399 -2.0126 2.0836 27 1 -0.6220 -2.3411 1.1013 28 1 -0.1945 -4.7140 1.0599 29 1 0.3248 -4.2803 2.7204 30 1 2.7896 -6.0988 0.3193 31 1 3.3823 -6.2657 2.6704 32 1 1.6493 -6.4896 3.0091 33 1 3.5217 -7.9838 0.0446 34 1 4.6345 -7.8387 1.4230 35 1 4.6835 -10.1697 0.1201 36 1 3.9334 -11.7467 1.6279 37 1 1.7505 -10.6956 2.7517 38 1 3.1351 -10.9588 3.8368 39 1 3.8070 -8.6429 3.6712 40 1 2.0545 -8.6547 4.0032 41 1 2.0701 -4.3076 -0.8733 42 1 3.2642 -3.3068 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382040444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = -22.056238 kcal Electronic energy + Delta-G solvation = -18222.446312 eV Core-core repulsion = 15586.612967 eV Total energy + Delta-G solvation = -2635.833345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.10786 -37.68004 -34.73188 -32.45394 -31.09485 -30.44132 -28.10939 -26.58899 -24.48143 -23.61475 -22.79962 -20.91529 -19.46176 -19.18256 -18.05541 -16.78267 -16.25842 -15.37288 -15.08165 -14.33150 -14.05632 -13.85224 -13.72872 -13.47200 -12.99853 -12.96014 -12.49363 -12.46618 -12.16868 -11.71451 -11.60235 -10.91430 -10.84149 -10.75582 -10.54141 -10.36958 -10.21732 -10.14767 -10.10179 -9.90242 -9.69098 -9.41093 -9.15030 -8.35797 -8.26152 -8.08235 -6.26098 -3.98054 2.13055 3.45996 3.49681 3.62803 4.34906 4.55553 4.57584 4.59648 4.88730 5.06248 5.14324 5.22630 5.36829 5.39142 5.43611 5.55032 5.59900 5.61872 5.69376 5.77108 5.82602 5.85618 5.92121 5.99052 6.07507 6.27506 6.35428 6.45987 6.50761 6.54860 6.61048 6.77470 6.79053 6.87781 7.05723 7.17613 7.43425 7.51697 7.69287 7.78871 8.33819 8.51731 8.97619 9.73883 11.11751 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051617 B = 0.003749 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.329566 B = 7466.620902 C = 7691.847749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 1.070 2.930 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.593 4.593 8 H 0.047 0.953 9 C 0.032 3.968 10 H 0.018 0.982 11 C -0.111 4.111 12 C -0.110 4.110 13 C 0.082 3.918 14 H 0.042 0.958 15 N -0.684 5.684 16 C 0.064 3.936 17 C -0.085 4.085 18 H 0.081 0.919 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.162 4.162 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.273 0.727 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.335 0.665 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -18.666 5.177 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.631 4.631 8 H 0.065 0.935 9 C 0.014 3.986 10 H 0.036 0.964 11 C -0.149 4.149 12 C -0.148 4.148 13 C -0.027 4.027 14 H 0.060 0.940 15 N -0.315 5.315 16 C -0.065 4.065 17 C -0.104 4.104 18 H 0.099 0.901 19 C -0.128 4.128 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.147 4.147 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.373 -17.136 5.221 18.702 hybrid contribution 1.227 -1.481 0.090 1.925 sum 6.599 -18.617 5.311 20.454 Atomic orbital electron populations 1.70719 1.06835 1.31160 1.46575 1.25756 0.96627 1.02451 0.93872 0.83526 0.74460 0.75164 0.76882 1.21691 1.21448 1.21463 1.22174 0.93830 0.91610 1.55511 0.93453 1.19328 0.93029 0.93142 0.93148 0.96394 1.22553 0.99706 0.92573 1.00111 1.22522 0.95524 0.97997 0.98805 1.22455 0.97125 0.85219 0.97861 0.93992 1.60662 1.52813 1.09370 1.08693 1.22023 0.98960 0.92497 0.93047 1.21239 0.98745 0.94769 0.95639 0.90074 1.20549 0.98110 0.93644 1.00473 1.22076 1.00363 0.95397 0.98919 1.22029 1.00048 0.98874 0.97068 1.20435 0.99342 0.96462 0.96407 1.21629 1.01918 0.94467 0.97288 1.22349 1.00570 0.97018 0.94715 0.91472 0.92512 0.93293 0.91843 0.93848 0.84674 0.95686 0.91163 0.90634 0.91152 0.88201 0.88317 0.90927 0.91340 0.91915 0.91527 0.93311 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.74 13.42 55.43 0.74 -27.00 16 2 C 0.02 0.49 5.33 -17.82 -0.09 0.39 16 3 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.59 -16.75 8.36 -34.44 -0.29 -17.03 16 8 H 0.05 1.34 7.33 -52.48 -0.38 0.95 16 9 C 0.03 0.82 2.50 -90.65 -0.23 0.59 16 10 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16 11 C -0.11 -2.60 5.31 -25.07 -0.13 -2.74 16 12 C -0.11 -2.14 6.58 -24.74 -0.16 -2.31 16 13 C 0.08 1.52 3.19 -66.02 -0.21 1.31 16 14 H 0.04 0.80 7.82 -51.93 -0.41 0.39 16 15 N -0.68 -10.41 6.33 -104.95 -0.66 -11.07 16 16 C 0.06 0.83 5.01 -3.82 -0.02 0.81 16 17 C -0.09 -0.93 2.45 -90.41 -0.22 -1.15 16 18 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 19 C -0.09 -0.94 4.94 -28.18 -0.14 -1.08 16 20 C -0.15 -1.44 9.80 -35.90 -0.35 -1.79 16 21 C -0.16 -1.47 9.80 -35.90 -0.35 -1.82 16 22 C -0.09 -0.76 6.12 -28.17 -0.17 -0.94 16 23 C -0.11 -1.08 5.31 -26.51 -0.14 -1.22 16 24 C -0.11 -2.29 5.92 -25.58 -0.15 -2.44 16 25 H 0.27 8.19 5.49 -40.82 -0.22 7.96 16 26 H 0.06 1.43 7.85 -51.93 -0.41 1.02 16 27 H 0.05 1.19 6.89 -51.93 -0.36 0.83 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.33 4.77 6.84 -39.29 -0.27 4.50 16 31 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.79 7.20 -51.93 -0.37 0.42 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 42 H 0.05 1.15 7.37 -51.93 -0.38 0.77 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -29.46 321.63 -10.31 -39.77 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.49 Total: 2.41 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.66 Total: -29.40 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.08 Total: -38.07 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.46 -10.31 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.712 kcal (2) G-P(sol) polarization free energy of solvation -29.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds