Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.01720 * 58.61242 * 9 7 2 11 11 C 1.54269 * 110.03161 * 297.16208 * 9 7 2 12 12 C 1.54883 * 104.19587 * 217.10721 * 11 9 7 13 13 C 1.54885 * 102.75261 * 37.94646 * 12 11 9 14 14 H 1.09003 * 110.48809 * 80.73129 * 13 12 11 15 15 N 1.46894 * 110.60224 * 203.32763 * 13 12 11 16 16 C 1.46906 * 110.99579 * 269.83829 * 15 13 12 17 17 C 1.52994 * 109.47219 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.64412 * 304.58000 * 17 16 15 19 19 C 1.53026 * 109.64386 * 64.99989 * 17 16 15 20 20 C 1.50067 * 110.14839 * 169.12316 * 19 17 16 21 21 C 1.29440 * 124.07707 * 342.87052 * 20 19 17 22 22 C 1.50070 * 124.07494 * 0.48413 * 21 20 19 23 23 C 1.53034 * 110.14046 * 342.84246 * 22 21 20 24 24 C 1.53872 * 110.02873 * 179.97438 * 9 7 2 25 25 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 26 26 H 1.08996 * 110.48844 * 335.78844 * 11 9 7 27 27 H 1.09007 * 110.47931 * 98.42621 * 11 9 7 28 28 H 1.09003 * 110.75647 * 279.63231 * 12 11 9 29 29 H 1.09002 * 110.91654 * 156.33403 * 12 11 9 30 30 H 1.00895 * 111.00576 * 145.88691 * 15 13 12 31 31 H 1.09000 * 109.46961 * 299.99635 * 16 15 13 32 32 H 1.08991 * 109.47248 * 59.99739 * 16 15 13 33 33 H 1.09002 * 109.35555 * 289.33015 * 19 17 16 34 34 H 1.08992 * 109.35750 * 48.91391 * 19 17 16 35 35 H 1.08002 * 117.96392 * 162.84613 * 20 19 17 36 36 H 1.08002 * 117.96473 * 180.47638 * 21 20 19 37 37 H 1.09007 * 109.35278 * 103.05649 * 22 21 20 38 38 H 1.08993 * 109.36303 * 222.78071 * 22 21 20 39 39 H 1.09002 * 109.65455 * 289.77501 * 23 22 21 40 40 H 1.09000 * 109.63957 * 169.13691 * 23 22 21 41 41 H 1.09004 * 110.03478 * 238.56737 * 24 9 7 42 42 H 1.08997 * 110.03759 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6029 -2.5557 -0.8740 11 6 0.4133 -2.6256 1.2898 12 6 0.5047 -4.1277 1.6562 13 6 1.9679 -4.4804 1.2908 14 1 2.6456 -4.1669 2.0848 15 7 2.1047 -5.9211 1.0386 16 6 2.4393 -6.6422 2.2739 17 6 2.5740 -8.1360 1.9719 18 1 1.6607 -8.4982 1.4998 19 6 3.7628 -8.3666 1.0363 20 6 4.0702 -9.8324 0.9426 21 6 3.6455 -10.7179 1.7859 22 6 2.7779 -10.4037 2.9694 23 6 2.8260 -8.9050 3.2750 24 6 2.2395 -3.6784 0.0005 25 1 -0.4850 -0.8401 0.0004 26 1 0.8399 -2.0126 2.0836 27 1 -0.6220 -2.3411 1.1013 28 1 -0.1945 -4.7140 1.0599 29 1 0.3248 -4.2803 2.7204 30 1 2.7896 -6.0988 0.3193 31 1 3.3823 -6.2657 2.6704 32 1 1.6493 -6.4896 3.0091 33 1 3.5217 -7.9838 0.0446 34 1 4.6345 -7.8387 1.4230 35 1 4.6835 -10.1697 0.1201 36 1 3.9334 -11.7467 1.6279 37 1 1.7505 -10.6956 2.7517 38 1 3.1351 -10.9588 3.8368 39 1 3.8070 -8.6429 3.6712 40 1 2.0545 -8.6547 4.0032 41 1 2.0701 -4.3076 -0.8733 42 1 3.2642 -3.3068 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382040444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -37.627694 kcal Electronic energy + Delta-G solvation = -18223.121541 eV Core-core repulsion = 15586.612967 eV Total energy + Delta-G solvation = -2636.508574 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10107 -39.16501 -36.17345 -34.21361 -32.02097 -31.45731 -29.94458 -28.10173 -25.85845 -25.39453 -23.64418 -21.87237 -21.17474 -20.92059 -18.91177 -18.80543 -17.09374 -16.92355 -16.17124 -15.70916 -15.61774 -15.25994 -15.03730 -14.47567 -14.30600 -14.16398 -13.93219 -13.66391 -13.21910 -13.03496 -12.79929 -12.68673 -12.40016 -12.10246 -11.93577 -11.92076 -11.76585 -11.58081 -11.54101 -11.47920 -11.12422 -10.95485 -10.49921 -10.41631 -9.84999 -9.36491 -8.55312 -6.28468 1.43562 1.52211 1.61405 1.77184 2.58321 3.16618 3.23209 3.74532 3.80569 3.87488 3.92175 4.04597 4.27896 4.29202 4.40387 4.49187 4.54164 4.58923 4.67967 4.70307 4.74134 4.76718 4.87038 4.92922 4.93532 5.01318 5.05394 5.07384 5.12047 5.21206 5.23116 5.30982 5.38146 5.51285 5.51891 5.69489 5.80698 6.09020 6.10780 6.18410 6.28485 6.49876 6.71442 7.51854 8.82677 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051617 B = 0.003749 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.329566 B = 7466.620902 C = 7691.847749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.034 4.034 3 Si 1.117 2.883 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.606 4.606 8 H 0.043 0.957 9 C 0.021 3.979 10 H -0.012 1.012 11 C -0.103 4.103 12 C -0.098 4.098 13 C 0.097 3.903 14 H 0.040 0.960 15 N -0.682 5.682 16 C 0.066 3.934 17 C -0.078 4.078 18 H 0.071 0.929 19 C -0.090 4.090 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.091 4.091 23 C -0.113 4.113 24 C -0.101 4.101 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.342 0.658 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -20.082 5.976 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.232 4.232 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.644 4.644 8 H 0.061 0.939 9 C 0.002 3.998 10 H 0.006 0.994 11 C -0.142 4.142 12 C -0.136 4.136 13 C -0.013 4.013 14 H 0.058 0.942 15 N -0.314 5.314 16 C -0.063 4.063 17 C -0.097 4.097 18 H 0.090 0.910 19 C -0.127 4.127 20 C -0.183 4.183 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.151 4.151 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.492 -18.587 6.018 20.587 hybrid contribution 0.870 -1.092 -0.179 1.407 sum 7.362 -19.678 5.840 21.807 Atomic orbital electron populations 1.70833 1.07782 1.30642 1.48610 1.27195 0.96728 1.06272 0.93043 0.82932 0.74223 0.71564 0.77351 1.19825 1.20676 1.20620 1.22544 0.93888 0.93143 1.54852 0.93856 1.19380 0.93678 0.94029 0.92740 0.99355 1.22335 0.97977 0.95374 0.98489 1.22407 0.96472 0.94626 1.00110 1.22169 0.96143 0.86930 0.96045 0.94182 1.60592 1.53537 1.07176 1.10076 1.22079 0.98914 0.93519 0.91831 1.21147 0.98584 0.93327 0.96612 0.91010 1.20519 0.97768 0.94399 1.00019 1.22143 1.01333 0.95020 0.99767 1.22250 0.99421 0.99501 0.96798 1.20480 0.99572 0.95861 0.96845 1.21620 1.02098 0.94958 0.96453 1.22200 0.98842 0.95964 0.96874 0.92623 0.94634 0.95038 0.91463 0.91819 0.83814 0.95416 0.91381 0.91112 0.91258 0.87417 0.86966 0.90575 0.89849 0.91881 0.91013 0.92217 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.42 21.45 0.29 -57.96 16 2 C -0.03 -1.99 5.33 84.65 0.45 -1.54 16 3 Si 1.12 51.29 29.90 68.60 2.05 53.34 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.61 -34.77 8.36 25.60 0.21 -34.55 16 8 H 0.04 2.46 7.33 -2.91 -0.02 2.44 16 9 C 0.02 1.07 2.50 -10.81 -0.03 1.04 16 10 H -0.01 -0.67 7.97 -2.39 -0.02 -0.69 16 11 C -0.10 -4.94 5.31 31.67 0.17 -4.77 16 12 C -0.10 -3.71 6.58 31.88 0.21 -3.50 16 13 C 0.10 3.44 3.19 46.01 0.15 3.59 16 14 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 15 N -0.68 -19.51 6.33 -485.94 -3.08 -22.59 16 16 C 0.07 1.56 5.01 86.30 0.43 1.99 16 17 C -0.08 -1.54 2.45 -10.66 -0.03 -1.57 16 18 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 19 C -0.09 -1.71 4.94 29.66 0.15 -1.56 16 20 C -0.16 -2.85 9.80 27.04 0.27 -2.59 16 21 C -0.16 -2.54 9.80 27.04 0.27 -2.28 16 22 C -0.09 -1.31 6.12 29.66 0.18 -1.13 16 23 C -0.11 -1.87 5.31 30.74 0.16 -1.71 16 24 C -0.10 -4.21 5.92 31.34 0.19 -4.03 16 25 H 0.26 16.35 5.49 -92.71 -0.51 15.84 16 26 H 0.03 1.81 7.85 -2.39 -0.02 1.79 16 27 H 0.03 1.57 6.89 -2.38 -0.02 1.56 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.34 9.14 6.84 -89.70 -0.61 8.52 16 31 H 0.03 0.66 8.04 -2.39 -0.02 0.64 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.39 7.20 -2.39 -0.02 1.37 16 34 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.11 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.06 2.33 7.94 -2.39 -0.02 2.31 16 42 H 0.05 2.04 7.37 -2.39 -0.02 2.02 16 Total: -1.00 -63.37 321.63 2.65 -60.72 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.61 Total: 19.09 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 2.78 Total: -52.61 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.79 Total: -80.54 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -63.37 2.65 -60.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.091 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds