Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47133 * 270.00539 * 3 2 1 5 5 H 1.48502 * 109.47164 * 30.00658 * 3 2 1 6 6 H 1.48498 * 109.46786 * 150.00834 * 3 2 1 7 7 C 1.37869 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00267 * 179.97438 * 7 2 1 10 10 H 1.09006 * 110.53692 * 57.38524 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46900 * 110.65967 * 142.05489 * 13 12 11 16 16 C 1.46900 * 111.00339 * 90.23953 * 15 13 12 17 17 C 1.53001 * 109.47330 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.63818 * 55.00109 * 17 16 15 19 19 C 1.53026 * 109.63990 * 294.57898 * 17 16 15 20 20 C 1.50167 * 110.08943 * 191.09474 * 19 17 16 21 21 C 1.29442 * 124.15133 * 16.71958 * 20 19 17 22 22 C 1.50071 * 124.07186 * 359.75886 * 21 20 19 23 23 C 1.53013 * 110.14860 * 17.13080 * 22 21 20 24 24 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 25 25 H 0.97007 * 119.99844 * 359.97438 * 1 2 3 26 26 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 27 27 H 1.08993 * 110.03408 * 98.42557 * 11 9 7 28 28 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 29 29 H 1.09003 * 110.03187 * 240.66884 * 12 11 9 30 30 H 1.00907 * 111.00213 * 214.18949 * 15 13 12 31 31 H 1.09002 * 109.46812 * 300.00257 * 16 15 13 32 32 H 1.09001 * 109.46940 * 59.99648 * 16 15 13 33 33 H 1.08993 * 109.35745 * 311.08287 * 19 17 16 34 34 H 1.09002 * 109.35690 * 70.67633 * 19 17 16 35 35 H 1.08001 * 117.88730 * 196.91981 * 20 19 17 36 36 H 1.08004 * 117.96362 * 179.73423 * 21 20 19 37 37 H 1.09002 * 109.35401 * 256.92102 * 22 21 20 38 38 H 1.09005 * 109.24512 * 137.27407 * 22 21 20 39 39 H 1.09007 * 109.64098 * 190.88094 * 23 22 21 40 40 H 1.08997 * 109.81652 * 70.35392 * 23 22 21 41 41 H 1.09002 * 110.75856 * 274.93801 * 24 9 7 42 42 H 1.09006 * 110.75640 * 38.12787 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8943 -0.6441 0.8587 11 6 4.0509 -0.5882 -1.3133 12 6 5.2974 -1.4057 -1.6950 13 6 5.4717 -2.4845 -0.6034 14 1 6.1732 -2.1444 0.1585 15 7 5.9260 -3.7506 -1.1937 16 6 7.3930 -3.8201 -1.2261 17 6 7.8271 -5.1495 -1.8467 18 1 7.3664 -5.2635 -2.8280 19 6 7.3982 -6.3049 -0.9396 20 6 8.0456 -7.5825 -1.3907 21 6 9.0668 -7.6390 -2.1842 22 6 9.7445 -6.4346 -2.7693 23 6 9.3543 -5.1785 -1.9875 24 6 4.0536 -2.6450 -0.0010 25 1 -0.4850 0.8401 0.0004 26 1 3.2983 -0.6667 -2.0978 27 1 4.3223 0.4560 -1.1586 28 1 5.1497 -1.8809 -2.6648 29 1 6.1736 -0.7580 -1.7264 30 1 5.5375 -4.5400 -0.6996 31 1 7.7826 -2.9960 -1.8239 32 1 7.7826 -3.7482 -0.2107 33 1 7.7016 -6.0915 0.0852 34 1 6.3141 -6.4116 -0.9787 35 1 7.6305 -8.5131 -1.0326 36 1 9.4555 -8.6135 -2.4408 37 1 9.4427 -6.3205 -3.8105 38 1 10.8248 -6.5705 -2.7192 39 1 9.6894 -4.2924 -2.5268 40 1 9.8130 -5.2011 -0.9990 41 1 4.1070 -3.0374 1.0145 42 1 3.4374 -3.2876 -0.6300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382040445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = -13.917716 kcal Electronic energy + Delta-G solvation = -18216.611221 eV Core-core repulsion = 15581.130789 eV Total energy + Delta-G solvation = -2635.480432 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.11608 -37.70481 -34.65102 -32.35355 -31.19054 -30.66508 -28.33100 -27.23285 -24.74962 -23.42203 -22.73299 -20.95713 -19.50731 -19.06468 -18.05462 -16.64179 -16.22050 -15.40375 -15.03222 -14.82713 -14.33643 -13.95424 -13.66822 -13.36377 -13.15090 -12.77568 -12.49117 -12.47022 -12.29215 -12.06473 -11.67132 -11.28426 -10.91479 -10.81228 -10.61627 -10.46181 -10.30909 -10.20213 -9.97265 -9.89607 -9.61688 -9.31426 -9.15153 -8.91135 -8.49794 -8.12452 -6.02009 -4.00097 2.13194 3.33297 3.41126 3.43548 4.31426 4.47332 4.54148 4.58813 4.86088 5.04917 5.13439 5.20684 5.26738 5.36935 5.40629 5.43488 5.55301 5.58386 5.68073 5.73773 5.77425 5.81121 5.83309 5.96773 6.04460 6.11603 6.32781 6.38963 6.47159 6.50643 6.55361 6.69574 6.76047 6.78988 6.89289 7.02120 7.22046 7.45555 7.62582 7.68484 7.85737 8.59421 9.02217 9.61452 11.11440 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.052430 B = 0.003945 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.914247 B = 7095.325401 C = 7437.271063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.029 0.971 11 C -0.129 4.129 12 C -0.108 4.108 13 C 0.077 3.923 14 H 0.040 0.960 15 N -0.682 5.682 16 C 0.064 3.936 17 C -0.086 4.086 18 H 0.081 0.919 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.163 4.163 22 C -0.089 4.089 23 C -0.115 4.115 24 C -0.106 4.106 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.338 0.662 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.195 -11.267 -3.452 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.545 4.545 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.047 0.953 11 C -0.168 4.168 12 C -0.146 4.146 13 C -0.032 4.032 14 H 0.058 0.942 15 N -0.314 5.314 16 C -0.065 4.065 17 C -0.104 4.104 18 H 0.100 0.900 19 C -0.128 4.128 20 C -0.167 4.167 21 C -0.181 4.181 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.980 -10.923 -4.098 22.279 hybrid contribution 0.590 0.735 0.908 1.309 sum 19.570 -10.188 -3.189 22.292 Atomic orbital electron populations 1.69916 1.06284 1.26796 1.51338 1.25000 0.94630 0.99000 0.94566 0.86892 0.80072 0.83758 0.78454 1.20319 1.22124 1.19030 1.21048 0.88769 0.94352 1.50283 0.90902 1.19893 0.96488 0.91416 0.92779 0.95292 1.22594 0.95962 0.97166 1.01045 1.22166 0.97574 0.96040 0.98843 1.22539 0.96712 0.89281 0.94687 0.94169 1.60586 1.07089 1.04710 1.58968 1.22032 0.88998 0.97026 0.98475 1.21241 0.95129 0.93901 1.00171 0.90012 1.20567 1.00556 0.92518 0.99117 1.22096 0.97120 0.98529 0.98988 1.22027 0.97840 0.98666 0.99537 1.20428 0.99626 0.93040 0.99537 1.21615 0.95693 0.97508 1.00451 1.22588 0.93163 1.00004 0.98622 0.92793 0.91424 0.94373 0.91479 0.93951 0.84357 0.91212 0.95717 0.91198 0.90477 0.88190 0.88315 0.90914 0.91369 0.91588 0.91960 0.93306 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 22.08 24.88 -169.99 -4.23 17.85 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.39 6.41 56.52 0.36 -6.03 16 7 C -0.51 -14.33 8.94 -34.44 -0.31 -14.64 16 8 H 0.07 2.23 8.01 -52.48 -0.42 1.81 16 9 C 0.01 0.32 2.28 -90.11 -0.21 0.11 16 10 H 0.03 0.70 7.06 -51.93 -0.37 0.34 16 11 C -0.13 -2.82 4.88 -25.61 -0.13 -2.94 16 12 C -0.11 -1.95 6.55 -25.51 -0.17 -2.12 16 13 C 0.08 1.30 3.20 -65.94 -0.21 1.09 16 14 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 15 N -0.68 -9.77 6.32 -104.85 -0.66 -10.43 16 16 C 0.06 0.77 5.01 -3.82 -0.02 0.75 16 17 C -0.09 -0.88 2.44 -90.40 -0.22 -1.11 16 18 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 19 C -0.09 -0.89 4.98 -28.13 -0.14 -1.03 16 20 C -0.15 -1.40 9.80 -35.85 -0.35 -1.75 16 21 C -0.16 -1.44 9.80 -35.90 -0.35 -1.79 16 22 C -0.09 -0.73 6.12 -28.18 -0.17 -0.91 16 23 C -0.11 -1.02 5.31 -26.52 -0.14 -1.16 16 24 C -0.11 -2.09 5.65 -24.73 -0.14 -2.23 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.07 1.57 7.83 -51.93 -0.41 1.17 16 27 H 0.04 0.82 6.05 -51.93 -0.31 0.51 16 28 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.34 4.55 6.95 -39.29 -0.27 4.27 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.29 8.04 -51.93 -0.42 -0.12 16 33 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.08 0.78 7.20 -51.93 -0.37 0.41 16 35 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -29.64 318.87 -9.60 -39.24 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.63 Total: 1.57 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.65 Total: -25.80 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.11 Total: -37.67 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.23 Total: 17.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.64 -9.60 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.321 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds