Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47133 * 270.00539 * 3 2 1 5 5 H 1.48502 * 109.47164 * 30.00658 * 3 2 1 6 6 H 1.48498 * 109.46786 * 150.00834 * 3 2 1 7 7 C 1.37869 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00267 * 179.97438 * 7 2 1 10 10 H 1.09006 * 110.53692 * 57.38524 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46900 * 110.65967 * 142.05489 * 13 12 11 16 16 C 1.46900 * 111.00339 * 90.23953 * 15 13 12 17 17 C 1.53001 * 109.47330 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.63818 * 55.00109 * 17 16 15 19 19 C 1.53026 * 109.63990 * 294.57898 * 17 16 15 20 20 C 1.50167 * 110.08943 * 191.09474 * 19 17 16 21 21 C 1.29442 * 124.15133 * 16.71958 * 20 19 17 22 22 C 1.50071 * 124.07186 * 359.75886 * 21 20 19 23 23 C 1.53013 * 110.14860 * 17.13080 * 22 21 20 24 24 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 25 25 H 0.97007 * 119.99844 * 359.97438 * 1 2 3 26 26 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 27 27 H 1.08993 * 110.03408 * 98.42557 * 11 9 7 28 28 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 29 29 H 1.09003 * 110.03187 * 240.66884 * 12 11 9 30 30 H 1.00907 * 111.00213 * 214.18949 * 15 13 12 31 31 H 1.09002 * 109.46812 * 300.00257 * 16 15 13 32 32 H 1.09001 * 109.46940 * 59.99648 * 16 15 13 33 33 H 1.08993 * 109.35745 * 311.08287 * 19 17 16 34 34 H 1.09002 * 109.35690 * 70.67633 * 19 17 16 35 35 H 1.08001 * 117.88730 * 196.91981 * 20 19 17 36 36 H 1.08004 * 117.96362 * 179.73423 * 21 20 19 37 37 H 1.09002 * 109.35401 * 256.92102 * 22 21 20 38 38 H 1.09005 * 109.24512 * 137.27407 * 22 21 20 39 39 H 1.09007 * 109.64098 * 190.88094 * 23 22 21 40 40 H 1.08997 * 109.81652 * 70.35392 * 23 22 21 41 41 H 1.09002 * 110.75856 * 274.93801 * 24 9 7 42 42 H 1.09006 * 110.75640 * 38.12787 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8943 -0.6441 0.8587 11 6 4.0509 -0.5882 -1.3133 12 6 5.2974 -1.4057 -1.6950 13 6 5.4717 -2.4845 -0.6034 14 1 6.1732 -2.1444 0.1585 15 7 5.9260 -3.7506 -1.1937 16 6 7.3930 -3.8201 -1.2261 17 6 7.8271 -5.1495 -1.8467 18 1 7.3664 -5.2635 -2.8280 19 6 7.3982 -6.3049 -0.9396 20 6 8.0456 -7.5825 -1.3907 21 6 9.0668 -7.6390 -2.1842 22 6 9.7445 -6.4346 -2.7693 23 6 9.3543 -5.1785 -1.9875 24 6 4.0536 -2.6450 -0.0010 25 1 -0.4850 0.8401 0.0004 26 1 3.2983 -0.6667 -2.0978 27 1 4.3223 0.4560 -1.1586 28 1 5.1497 -1.8809 -2.6648 29 1 6.1736 -0.7580 -1.7264 30 1 5.5375 -4.5400 -0.6996 31 1 7.7826 -2.9960 -1.8239 32 1 7.7826 -3.7482 -0.2107 33 1 7.7016 -6.0915 0.0852 34 1 6.3141 -6.4116 -0.9787 35 1 7.6305 -8.5131 -1.0326 36 1 9.4555 -8.6135 -2.4408 37 1 9.4427 -6.3205 -3.8105 38 1 10.8248 -6.5705 -2.7192 39 1 9.6894 -4.2924 -2.5268 40 1 9.8130 -5.2011 -0.9990 41 1 4.1070 -3.0374 1.0145 42 1 3.4374 -3.2876 -0.6300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382040445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = -31.182142 kcal Electronic energy + Delta-G solvation = -18217.359863 eV Core-core repulsion = 15581.130789 eV Total energy + Delta-G solvation = -2636.229074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03103 -39.06610 -35.94052 -34.30959 -32.17276 -31.52861 -30.04847 -28.68178 -25.90919 -25.03821 -23.60704 -21.86433 -20.97286 -20.84050 -18.79122 -18.63981 -17.06558 -16.80761 -16.64003 -16.03833 -15.54850 -15.00623 -14.85508 -14.72515 -14.25144 -14.16650 -13.97960 -13.68152 -13.23824 -13.17593 -12.88892 -12.79374 -12.44396 -12.17940 -11.93457 -11.82532 -11.60955 -11.54334 -11.47390 -11.31143 -11.03866 -10.92613 -10.89684 -10.69723 -9.83109 -9.27604 -8.27774 -6.30562 1.34185 1.36000 1.45360 1.46837 2.35825 3.07544 3.23952 3.77466 3.84684 3.89886 4.02860 4.06932 4.24845 4.31392 4.43663 4.51520 4.58659 4.61528 4.72719 4.76750 4.78987 4.80816 4.94031 4.96276 4.98091 5.03773 5.09224 5.09757 5.13990 5.24177 5.26982 5.34991 5.43680 5.49121 5.56180 5.65866 5.82248 5.82649 6.11151 6.26628 6.35647 6.55425 6.76116 7.34668 8.89390 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.052430 B = 0.003945 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.914247 B = 7095.325401 C = 7437.271063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.512 4.512 8 H 0.030 0.970 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.128 4.128 12 C -0.101 4.101 13 C 0.091 3.909 14 H 0.054 0.946 15 N -0.687 5.687 16 C 0.067 3.933 17 C -0.079 4.079 18 H 0.069 0.931 19 C -0.090 4.090 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.101 4.101 25 H 0.264 0.736 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.343 0.657 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.422 -11.013 -3.708 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.550 4.550 8 H 0.049 0.951 9 C -0.013 4.013 10 H 0.048 0.952 11 C -0.166 4.166 12 C -0.139 4.139 13 C -0.018 4.018 14 H 0.071 0.929 15 N -0.319 5.319 16 C -0.062 4.062 17 C -0.098 4.098 18 H 0.087 0.913 19 C -0.127 4.127 20 C -0.183 4.183 21 C -0.181 4.181 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 22.233 -10.694 -4.355 25.053 hybrid contribution -0.478 0.540 0.985 1.221 sum 21.755 -10.154 -3.370 24.244 Atomic orbital electron populations 1.70071 1.08272 1.27909 1.53287 1.25901 0.95399 1.03106 0.94329 0.85862 0.79436 0.78696 0.79181 1.19149 1.22059 1.16742 1.21374 0.91573 0.92753 1.49348 0.95132 1.19889 0.93275 0.94297 0.93855 0.95237 1.22458 0.97078 0.98059 0.99004 1.22102 0.96522 0.96209 0.99063 1.22308 0.94878 0.90246 0.94411 0.92858 1.60532 1.08839 1.03770 1.58723 1.22075 0.87213 0.97939 0.99004 1.21154 0.96183 0.93165 0.99325 0.91292 1.20536 1.00198 0.92789 0.99149 1.22174 0.97727 0.98530 0.99880 1.22248 0.97436 0.99570 0.98826 1.20477 1.00502 0.92388 0.99425 1.21602 0.94358 0.98227 1.00822 1.22468 0.94927 0.97291 0.99253 0.92681 0.93819 0.93820 0.91478 0.91417 0.83803 0.91147 0.95042 0.91060 0.91200 0.87625 0.87141 0.90696 0.89893 0.90922 0.91771 0.92432 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.94 45.32 24.88 68.60 1.71 47.03 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.24 -10.78 6.41 99.48 0.64 -10.14 16 7 C -0.51 -29.82 8.94 25.60 0.23 -29.59 16 8 H 0.03 1.97 8.01 -2.91 -0.02 1.95 16 9 C 0.01 0.29 2.28 -10.47 -0.02 0.26 16 10 H 0.03 1.38 7.06 -2.38 -0.02 1.36 16 11 C -0.13 -5.37 4.88 31.32 0.15 -5.21 16 12 C -0.10 -3.37 6.55 31.39 0.21 -3.16 16 13 C 0.09 2.86 3.20 46.07 0.15 3.01 16 14 H 0.05 1.57 7.83 -2.39 -0.02 1.55 16 15 N -0.69 -18.22 6.32 -485.64 -3.07 -21.29 16 16 C 0.07 1.42 5.01 86.30 0.43 1.85 16 17 C -0.08 -1.48 2.44 -10.65 -0.03 -1.50 16 18 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 19 C -0.09 -1.63 4.98 29.69 0.15 -1.48 16 20 C -0.17 -2.82 9.80 27.07 0.27 -2.55 16 21 C -0.16 -2.52 9.80 27.04 0.27 -2.26 16 22 C -0.09 -1.27 6.12 29.66 0.18 -1.08 16 23 C -0.11 -1.71 5.31 30.73 0.16 -1.55 16 24 C -0.10 -3.94 5.65 31.89 0.18 -3.76 16 25 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 26 H 0.04 2.01 7.83 -2.39 -0.02 1.99 16 27 H 0.04 1.77 6.05 -2.39 -0.01 1.75 16 28 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.34 8.69 6.95 -89.69 -0.62 8.06 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 0.65 8.04 -2.39 -0.02 0.63 16 33 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 34 H 0.07 1.35 7.20 -2.39 -0.02 1.33 16 35 H 0.11 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 2.29 8.04 -2.38 -0.02 2.27 16 Total: -1.00 -64.73 318.87 1.99 -62.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.27 Total: 18.27 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 2.78 Total: -46.04 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -2.77 Total: -82.00 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.71 Total: 47.03 kcal Total: -64.73 1.99 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382040445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.559 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds