Wall clock time and date at job start Mon Mar 30 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46845 * 269.99742 * 3 2 1 5 5 H 1.48504 * 109.47054 * 29.99585 * 3 2 1 6 6 H 1.48501 * 109.47060 * 149.99708 * 3 2 1 7 7 C 1.37878 * 119.99470 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00624 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.43312 * 298.91809 * 9 7 2 11 11 C 1.54268 * 110.48226 * 61.45096 * 9 7 2 12 12 C 1.53876 * 106.59511 * 142.42549 * 11 9 7 13 13 C 1.54263 * 106.60028 * 359.97438 * 12 11 9 14 14 H 1.09000 * 110.48469 * 95.20443 * 13 12 11 15 15 N 1.46899 * 110.48852 * 217.71142 * 13 12 11 16 16 C 1.46905 * 111.00117 * 239.44550 * 15 13 12 17 17 C 1.53002 * 109.46629 * 154.45401 * 16 15 13 18 18 C 1.52994 * 117.50233 * 8.74683 * 17 16 15 19 19 C 1.52995 * 117.50019 * 300.08272 * 17 16 15 20 20 C 1.52998 * 109.47175 * 274.45162 * 16 15 13 21 21 C 1.53003 * 117.49761 * 132.99359 * 20 16 15 22 22 C 1.53005 * 117.49764 * 64.33720 * 20 16 15 23 23 C 1.54889 * 104.31454 * 336.45932 * 13 12 11 24 24 H 0.96999 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.03736 * 23.14146 * 11 9 7 26 26 H 1.09004 * 110.07747 * 261.72698 * 11 9 7 27 27 H 1.09007 * 110.03458 * 240.71351 * 12 11 9 28 28 H 1.09006 * 110.03813 * 119.28605 * 12 11 9 29 29 H 1.00901 * 110.99979 * 3.40415 * 15 13 12 30 30 H 1.09001 * 109.47149 * 34.45571 * 16 15 13 31 31 H 1.09006 * 115.54496 * 154.42115 * 17 16 15 32 32 H 1.08992 * 117.50049 * 0.02562 * 18 17 16 33 33 H 1.08999 * 117.49603 * 145.02416 * 18 17 16 34 34 H 1.08998 * 117.50591 * 214.98314 * 19 17 16 35 35 H 1.09006 * 117.49801 * 0.02562 * 19 17 16 36 36 H 1.08997 * 115.55255 * 278.66865 * 20 16 15 37 37 H 1.09001 * 117.49714 * 0.02562 * 21 20 16 38 38 H 1.09000 * 117.49649 * 145.01546 * 21 20 16 39 39 H 1.09000 * 117.49624 * 214.97413 * 22 20 16 40 40 H 1.09003 * 117.49925 * 359.97438 * 22 20 16 41 41 H 1.09002 * 110.75366 * 156.18519 * 23 13 12 42 42 H 1.08995 * 110.75595 * 279.56177 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6326 -2.5816 0.8944 11 6 0.3835 -2.6217 -1.2692 12 6 0.4423 -4.0974 -1.7010 13 6 1.3440 -4.8200 -0.6790 14 1 0.7408 -5.2794 0.1041 15 7 2.1718 -5.8320 -1.3488 16 6 1.9120 -7.1706 -0.8021 17 6 2.2481 -8.2263 -1.8573 18 6 2.9528 -7.7535 -3.1303 19 6 1.4813 -8.1723 -3.1801 20 6 2.7815 -7.3930 0.4370 21 6 2.1035 -7.9691 1.6817 22 6 2.5241 -6.4976 1.6507 23 6 2.2324 -3.6962 -0.0901 24 1 -0.4849 0.8401 -0.0004 25 1 0.7844 -1.9855 -2.0582 26 1 -0.6455 -2.3381 -1.0481 27 1 0.8719 -4.1775 -2.6997 28 1 -0.5580 -4.5303 -1.6887 29 1 2.0268 -5.8147 -2.3472 30 1 0.8604 -7.2532 -0.5276 31 1 2.5148 -9.2098 -1.4699 32 1 3.1774 -6.6905 -3.2160 33 1 3.6828 -8.4261 -3.5808 34 1 1.2438 -9.1199 -3.6633 35 1 0.7376 -7.3842 -3.2988 36 1 3.8114 -7.6915 0.2412 37 1 1.0380 -8.1900 1.6176 38 1 2.6874 -8.6464 2.3049 39 1 3.3845 -6.2075 2.2536 40 1 1.7355 -5.7498 1.5662 41 1 2.6001 -3.9724 0.8981 42 1 3.0599 -3.4663 -0.7612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382384053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:04 Heat of formation + Delta-G solvation = 40.165619 kcal Electronic energy + Delta-G solvation = -18861.911236 eV Core-core repulsion = 16228.776034 eV Total energy + Delta-G solvation = -2633.135203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37564 -36.91745 -36.29722 -33.24547 -31.60123 -28.12551 -27.60740 -25.41640 -23.37199 -22.42287 -22.18328 -21.10079 -19.76389 -19.38087 -18.96710 -16.56342 -15.80485 -15.50790 -14.96933 -14.53444 -14.49815 -14.12142 -13.72787 -12.94474 -12.64069 -12.33143 -12.03375 -11.62190 -11.42746 -11.37358 -11.14461 -11.03838 -10.88452 -10.58017 -10.50990 -10.41802 -10.20169 -10.06786 -9.91009 -9.74224 -9.66038 -9.40730 -9.06165 -8.64250 -8.31535 -7.88935 -5.93807 -3.95653 3.34887 3.41473 3.45280 3.73847 3.95958 4.48515 4.53056 4.69865 4.84444 4.97375 5.06792 5.18384 5.26553 5.33677 5.40498 5.55519 5.59982 5.64237 5.69407 5.78549 5.90838 5.94536 5.98956 6.07132 6.14984 6.21833 6.28363 6.34982 6.47661 6.55743 6.77289 6.82933 6.96966 7.15846 7.24098 7.43499 7.65174 7.77858 7.80063 7.99807 8.11524 8.56475 9.07799 9.68009 11.15879 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.005341 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.171312 B = 5241.384062 C = 5682.006325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.046 3.954 10 H 0.024 0.976 11 C -0.091 4.091 12 C -0.144 4.144 13 C 0.080 3.920 14 H 0.058 0.942 15 N -0.676 5.676 16 C 0.146 3.854 17 C -0.150 4.150 18 C -0.174 4.174 19 C -0.190 4.190 20 C -0.128 4.128 21 C -0.191 4.191 22 C -0.170 4.170 23 C -0.096 4.096 24 H 0.258 0.742 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.337 0.663 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -16.253 -2.780 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.027 3.973 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.182 4.182 13 C -0.029 4.029 14 H 0.076 0.924 15 N -0.310 5.310 16 C 0.036 3.964 17 C -0.168 4.168 18 C -0.211 4.211 19 C -0.227 4.227 20 C -0.147 4.147 21 C -0.228 4.228 22 C -0.207 4.207 23 C -0.134 4.134 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.159 0.841 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.065 0.935 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.999 -16.017 -2.401 16.471 hybrid contribution -0.497 0.745 -0.441 0.998 sum 2.502 -15.273 -2.842 15.735 Atomic orbital electron populations 1.69982 1.05863 1.26237 1.51027 1.24984 0.94808 0.98938 0.95334 0.86670 0.79951 0.83815 0.78006 1.20817 1.21387 1.19944 1.21180 0.92830 0.90535 1.50111 0.92680 1.19488 0.92380 0.92019 0.93446 0.95799 1.21985 1.00820 0.90392 0.99773 1.22795 0.97806 0.99857 0.97784 1.22683 0.92967 0.91986 0.95261 0.92414 1.60821 1.58861 1.02987 1.08287 1.20578 0.95915 0.87945 0.91938 1.22454 1.05002 1.00185 0.89199 1.23038 0.94537 1.02893 1.00668 1.23017 0.95394 1.03080 1.01201 1.22103 0.99686 1.04228 0.88653 1.23018 1.00644 0.97497 1.01683 1.23034 1.03806 0.92918 1.00955 1.22603 0.98199 0.94046 0.98581 0.93250 0.93080 0.92913 0.93151 0.93954 0.84126 0.93791 0.87596 0.87278 0.89120 0.88967 0.89042 0.88035 0.89378 0.89303 0.89113 0.87924 0.93453 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 12.35 55.43 0.68 -25.29 16 2 C 0.06 1.70 5.33 -17.82 -0.09 1.60 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.14 8.41 -34.44 -0.29 -14.43 16 8 H 0.05 1.53 7.78 -52.49 -0.41 1.12 16 9 C 0.05 1.14 2.78 -90.03 -0.25 0.89 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.09 -2.14 5.40 -25.61 -0.14 -2.28 16 12 C -0.14 -2.70 6.40 -25.61 -0.16 -2.86 16 13 C 0.08 1.42 2.30 -66.06 -0.15 1.27 16 14 H 0.06 1.03 5.71 -51.93 -0.30 0.73 16 15 N -0.68 -10.20 5.77 -98.01 -0.57 -10.76 16 16 C 0.15 1.92 2.53 -67.71 -0.17 1.75 16 17 C -0.15 -1.66 5.70 -90.62 -0.52 -2.18 16 18 C -0.17 -1.85 9.65 -26.70 -0.26 -2.11 16 19 C -0.19 -1.95 9.86 -26.70 -0.26 -2.21 16 20 C -0.13 -1.65 5.30 -90.62 -0.48 -2.13 16 21 C -0.19 -2.23 10.18 -26.69 -0.27 -2.50 16 22 C -0.17 -2.36 8.90 -26.69 -0.24 -2.59 16 23 C -0.10 -2.01 5.75 -24.65 -0.14 -2.16 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 26 H 0.05 1.33 7.93 -51.93 -0.41 0.91 16 27 H 0.05 0.88 7.42 -51.93 -0.39 0.50 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 4.84 4.56 -39.29 -0.18 4.66 16 30 H 0.04 0.62 7.32 -51.93 -0.38 0.24 16 31 H 0.11 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.11 1.29 6.14 -51.93 -0.32 0.97 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.10 1.61 4.94 -51.93 -0.26 1.35 16 41 H 0.05 0.97 6.65 -51.93 -0.35 0.62 16 42 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -28.00 321.19 -10.64 -38.64 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.15 Total: 5.93 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -3.43 Total: -29.95 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.12 Total: -36.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.00 -10.64 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382384053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.809 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds