Wall clock time and date at job start Mon Mar 30 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46845 * 269.99742 * 3 2 1 5 5 H 1.48504 * 109.47054 * 29.99585 * 3 2 1 6 6 H 1.48501 * 109.47060 * 149.99708 * 3 2 1 7 7 C 1.37878 * 119.99470 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00624 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.43312 * 298.91809 * 9 7 2 11 11 C 1.54268 * 110.48226 * 61.45096 * 9 7 2 12 12 C 1.53876 * 106.59511 * 142.42549 * 11 9 7 13 13 C 1.54263 * 106.60028 * 359.97438 * 12 11 9 14 14 H 1.09000 * 110.48469 * 95.20443 * 13 12 11 15 15 N 1.46899 * 110.48852 * 217.71142 * 13 12 11 16 16 C 1.46905 * 111.00117 * 239.44550 * 15 13 12 17 17 C 1.53002 * 109.46629 * 154.45401 * 16 15 13 18 18 C 1.52994 * 117.50233 * 8.74683 * 17 16 15 19 19 C 1.52995 * 117.50019 * 300.08272 * 17 16 15 20 20 C 1.52998 * 109.47175 * 274.45162 * 16 15 13 21 21 C 1.53003 * 117.49761 * 132.99359 * 20 16 15 22 22 C 1.53005 * 117.49764 * 64.33720 * 20 16 15 23 23 C 1.54889 * 104.31454 * 336.45932 * 13 12 11 24 24 H 0.96999 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.03736 * 23.14146 * 11 9 7 26 26 H 1.09004 * 110.07747 * 261.72698 * 11 9 7 27 27 H 1.09007 * 110.03458 * 240.71351 * 12 11 9 28 28 H 1.09006 * 110.03813 * 119.28605 * 12 11 9 29 29 H 1.00901 * 110.99979 * 3.40415 * 15 13 12 30 30 H 1.09001 * 109.47149 * 34.45571 * 16 15 13 31 31 H 1.09006 * 115.54496 * 154.42115 * 17 16 15 32 32 H 1.08992 * 117.50049 * 0.02562 * 18 17 16 33 33 H 1.08999 * 117.49603 * 145.02416 * 18 17 16 34 34 H 1.08998 * 117.50591 * 214.98314 * 19 17 16 35 35 H 1.09006 * 117.49801 * 0.02562 * 19 17 16 36 36 H 1.08997 * 115.55255 * 278.66865 * 20 16 15 37 37 H 1.09001 * 117.49714 * 0.02562 * 21 20 16 38 38 H 1.09000 * 117.49649 * 145.01546 * 21 20 16 39 39 H 1.09000 * 117.49624 * 214.97413 * 22 20 16 40 40 H 1.09003 * 117.49925 * 359.97438 * 22 20 16 41 41 H 1.09002 * 110.75366 * 156.18519 * 23 13 12 42 42 H 1.08995 * 110.75595 * 279.56177 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6326 -2.5816 0.8944 11 6 0.3835 -2.6217 -1.2692 12 6 0.4423 -4.0974 -1.7010 13 6 1.3440 -4.8200 -0.6790 14 1 0.7408 -5.2794 0.1041 15 7 2.1718 -5.8320 -1.3488 16 6 1.9120 -7.1706 -0.8021 17 6 2.2481 -8.2263 -1.8573 18 6 2.9528 -7.7535 -3.1303 19 6 1.4813 -8.1723 -3.1801 20 6 2.7815 -7.3930 0.4370 21 6 2.1035 -7.9691 1.6817 22 6 2.5241 -6.4976 1.6507 23 6 2.2324 -3.6962 -0.0901 24 1 -0.4849 0.8401 -0.0004 25 1 0.7844 -1.9855 -2.0582 26 1 -0.6455 -2.3381 -1.0481 27 1 0.8719 -4.1775 -2.6997 28 1 -0.5580 -4.5303 -1.6887 29 1 2.0268 -5.8147 -2.3472 30 1 0.8604 -7.2532 -0.5276 31 1 2.5148 -9.2098 -1.4699 32 1 3.1774 -6.6905 -3.2160 33 1 3.6828 -8.4261 -3.5808 34 1 1.2438 -9.1199 -3.6633 35 1 0.7376 -7.3842 -3.2988 36 1 3.8114 -7.6915 0.2412 37 1 1.0380 -8.1900 1.6176 38 1 2.6874 -8.6464 2.3049 39 1 3.3845 -6.2075 2.2536 40 1 1.7355 -5.7498 1.5662 41 1 2.6001 -3.9724 0.8981 42 1 3.0599 -3.4663 -0.7612 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382384053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:03 Heat of formation + Delta-G solvation = 26.168882 kcal Electronic energy + Delta-G solvation = -18862.518180 eV Core-core repulsion = 16228.776034 eV Total energy + Delta-G solvation = -2633.742147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52116 -38.44534 -37.25686 -35.00088 -33.28914 -29.91576 -29.06479 -27.00403 -25.18732 -23.24733 -23.19618 -22.04094 -21.18540 -20.93253 -20.47820 -18.39861 -17.14780 -16.78790 -16.51446 -15.93804 -15.75900 -15.47955 -15.12372 -14.40974 -14.07732 -13.96802 -13.67292 -13.06970 -12.81512 -12.70155 -12.49869 -12.35401 -12.29962 -12.21749 -12.11063 -11.80175 -11.53649 -11.38624 -11.29574 -11.06342 -10.91184 -10.83579 -10.73250 -10.69762 -10.46802 -9.18965 -8.10517 -6.19985 1.40687 1.40996 1.51764 2.44224 2.82161 2.99014 3.19849 3.44558 3.71296 3.89043 3.98091 4.08161 4.13084 4.16717 4.22567 4.30429 4.31726 4.44764 4.57447 4.72912 4.84069 4.86556 4.89690 4.97363 5.02389 5.07908 5.11225 5.12582 5.20754 5.26059 5.29667 5.33104 5.39570 5.41685 5.47510 5.51569 5.68026 5.94574 6.01163 6.30465 6.43056 6.59427 6.91547 7.47302 8.98280 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.005341 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.171312 B = 5241.384062 C = 5682.006325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.036 3.964 10 H -0.007 1.007 11 C -0.082 4.082 12 C -0.134 4.134 13 C 0.098 3.902 14 H 0.059 0.941 15 N -0.675 5.675 16 C 0.146 3.854 17 C -0.153 4.153 18 C -0.175 4.175 19 C -0.183 4.183 20 C -0.129 4.129 21 C -0.168 4.168 22 C -0.192 4.192 23 C -0.083 4.083 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.343 0.657 30 H 0.038 0.962 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 -18.057 -3.481 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.017 3.983 10 H 0.011 0.989 11 C -0.121 4.121 12 C -0.172 4.172 13 C -0.011 4.011 14 H 0.077 0.923 15 N -0.309 5.309 16 C 0.037 3.963 17 C -0.171 4.171 18 C -0.212 4.212 19 C -0.220 4.220 20 C -0.148 4.148 21 C -0.206 4.206 22 C -0.230 4.230 23 C -0.122 4.122 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.808 -17.837 -3.108 18.502 hybrid contribution -0.747 1.306 -0.193 1.517 sum 3.061 -16.531 -3.301 17.133 Atomic orbital electron populations 1.70107 1.07228 1.27054 1.51700 1.25762 0.95656 1.02375 0.94955 0.85651 0.78797 0.79557 0.78246 1.20111 1.20916 1.19283 1.21538 0.92875 0.92132 1.50172 0.93148 1.19488 0.93067 0.92960 0.92770 0.98920 1.21757 0.98587 0.93431 0.98294 1.22690 0.99348 0.96375 0.98806 1.22338 0.92080 0.91737 0.94975 0.92283 1.60703 1.57988 1.03627 1.08620 1.20609 0.95688 0.87284 0.92749 1.22418 1.05824 1.00020 0.88882 1.23051 0.95302 1.02454 1.00412 1.23069 0.94894 1.03658 1.00403 1.22153 1.00102 1.03986 0.88591 1.23076 1.01142 0.95825 1.00525 1.22961 1.03509 0.93965 1.02518 1.22394 0.97293 0.93724 0.98752 0.93212 0.95473 0.95423 0.91432 0.92230 0.83358 0.94380 0.86129 0.88622 0.87593 0.87219 0.89790 0.87594 0.88897 0.87361 0.89222 0.90196 0.93342 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 12.35 21.45 0.26 -54.81 16 2 C 0.01 0.62 5.33 84.65 0.45 1.07 16 3 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -30.27 8.41 25.60 0.22 -30.05 16 8 H 0.05 2.85 7.78 -2.91 -0.02 2.83 16 9 C 0.04 1.87 2.78 -10.41 -0.03 1.84 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.08 -3.97 5.40 31.32 0.17 -3.81 16 12 C -0.13 -4.93 6.40 31.32 0.20 -4.73 16 13 C 0.10 3.44 2.30 45.99 0.11 3.55 16 14 H 0.06 2.08 5.71 -2.39 -0.01 2.07 16 15 N -0.68 -19.40 5.77 -463.98 -2.68 -22.08 16 16 C 0.15 3.54 2.53 44.91 0.11 3.65 16 17 C -0.15 -2.95 5.70 -10.80 -0.06 -3.01 16 18 C -0.17 -3.25 9.65 30.62 0.30 -2.95 16 19 C -0.18 -3.22 9.86 30.62 0.30 -2.92 16 20 C -0.13 -3.09 5.30 -10.79 -0.06 -3.15 16 21 C -0.17 -3.54 10.18 30.62 0.31 -3.23 16 22 C -0.19 -5.18 8.90 30.62 0.27 -4.91 16 23 C -0.08 -3.55 5.75 31.94 0.18 -3.37 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 26 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16 27 H 0.07 2.27 7.42 -2.38 -0.02 2.25 16 28 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.34 9.22 4.56 -89.69 -0.41 8.81 16 30 H 0.04 0.99 7.32 -2.39 -0.02 0.97 16 31 H 0.12 2.02 8.11 -2.38 -0.02 2.00 16 32 H 0.10 2.06 6.14 -2.39 -0.01 2.04 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.62 7.88 -2.38 -0.02 1.60 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.08 2.53 4.94 -2.39 -0.01 2.51 16 41 H 0.05 2.02 6.65 -2.39 -0.02 2.01 16 42 H 0.05 2.22 8.05 -2.39 -0.02 2.20 16 Total: -1.00 -61.26 321.19 2.66 -58.59 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.58 Total: 23.42 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 2.47 Total: -52.02 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.41 Total: -76.90 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.26 2.66 -58.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382384053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.762 kcal (2) G-P(sol) polarization free energy of solvation -61.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds