Wall clock time and date at job start Mon Mar 30 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48506 * 109.47003 * 269.99913 * 3 2 1 5 5 H 1.48500 * 109.47383 * 29.99909 * 3 2 1 6 6 H 1.48500 * 109.47460 * 150.00333 * 3 2 1 7 7 C 1.37875 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00021 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47094 * 177.67202 * 9 7 2 11 11 C 1.46905 * 111.00151 * 290.65023 * 10 9 7 12 12 C 1.53000 * 117.49825 * 1.97456 * 11 10 9 13 13 C 1.52995 * 117.49881 * 293.35026 * 11 10 9 14 14 C 1.46903 * 110.99840 * 54.60864 * 10 9 7 15 15 H 1.08993 * 108.77703 * 295.55042 * 14 10 9 16 16 C 1.48677 * 108.88353 * 177.01832 * 14 10 9 17 17 C 1.28225 * 136.18418 * 238.21755 * 16 14 10 18 18 C 1.51377 * 121.79791 * 353.55997 * 17 16 14 19 19 C 1.53705 * 106.86163 * 281.76108 * 18 17 16 20 20 C 1.52568 * 109.50910 * 54.42303 * 19 18 17 21 21 C 1.51527 * 106.58063 * 64.35208 * 20 19 18 22 22 C 1.52687 * 112.98281 * 277.88887 * 21 20 19 23 23 H 0.96993 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46952 * 57.67939 * 9 7 2 25 25 H 1.08994 * 109.47265 * 297.67619 * 9 7 2 26 26 H 1.09000 * 115.54295 * 147.67695 * 11 10 9 27 27 H 1.08997 * 117.50034 * 359.97438 * 12 11 10 28 28 H 1.09000 * 117.49674 * 145.01355 * 12 11 10 29 29 H 1.09003 * 117.49787 * 214.97352 * 13 11 10 30 30 H 1.08995 * 117.49877 * 0.02562 * 13 11 10 31 31 H 1.08001 * 111.90858 * 58.52537 * 16 14 10 32 32 H 1.08001 * 119.10195 * 173.53689 * 17 16 14 33 33 H 1.08996 * 109.97466 * 41.09654 * 18 17 16 34 34 H 1.09004 * 109.97447 * 162.33669 * 18 17 16 35 35 H 1.09009 * 109.46122 * 174.43315 * 19 18 17 36 36 H 1.08998 * 109.46767 * 294.41179 * 19 18 17 37 37 H 1.09002 * 110.02707 * 183.61135 * 20 19 18 38 38 H 1.08999 * 110.03308 * 305.08404 * 20 19 18 39 39 H 1.08991 * 108.77850 * 38.79350 * 21 20 19 40 40 H 1.09001 * 108.77662 * 156.98763 * 21 20 19 41 41 H 1.09000 * 109.35550 * 82.70297 * 22 21 20 42 42 H 1.09003 * 109.35468 * 202.41828 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5778 0.0569 11 6 3.7212 -3.1819 1.3665 12 6 2.9618 -2.3331 2.3881 13 6 4.4545 -2.6080 2.5804 14 6 3.4274 -3.3844 -1.0285 15 1 2.3494 -3.4523 -0.8830 16 6 4.0079 -4.7519 -0.9704 17 6 4.6729 -5.5092 -1.7632 18 6 4.9331 -5.1234 -3.2036 19 6 3.6395 -5.4100 -3.9827 20 6 2.4722 -4.6898 -3.3145 21 6 2.7511 -3.2057 -3.4395 22 6 3.7051 -2.6859 -2.3667 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6439 0.8679 25 1 3.8745 -0.7173 -0.9105 26 1 3.5252 -4.2541 1.3572 27 1 2.6702 -1.3264 2.0888 28 1 2.2658 -2.8469 3.0512 29 1 4.7406 -3.3027 3.3703 30 1 5.1444 -1.7821 2.4076 31 1 3.8179 -5.2304 -0.0210 32 1 5.0581 -6.4479 -1.3930 33 1 5.1785 -4.0633 -3.2666 34 1 5.7519 -5.7195 -3.6067 35 1 3.7466 -5.0549 -5.0077 36 1 3.4489 -6.4832 -3.9882 37 1 1.5402 -4.9385 -3.8222 38 1 2.4124 -4.9711 -2.2631 39 1 3.1861 -3.0118 -4.4198 40 1 1.8083 -2.6639 -3.3631 41 1 4.7330 -2.8835 -2.6709 42 1 3.5638 -1.6117 -2.2474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390410714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:26 Heat of formation + Delta-G solvation = 68.214907 kcal Electronic energy + Delta-G solvation = -19707.664510 eV Core-core repulsion = 17075.745616 eV Total energy + Delta-G solvation = -2631.918894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.54023 -37.42877 -33.74581 -32.78681 -32.34120 -30.20943 -27.65565 -26.79303 -24.55170 -22.48284 -21.43917 -20.82859 -19.66643 -19.20247 -17.87027 -16.67344 -16.26760 -15.30445 -14.85618 -14.46083 -14.12021 -13.93442 -13.14876 -13.10158 -12.90206 -12.42806 -11.94399 -11.63243 -11.48434 -11.37206 -11.28547 -11.16526 -10.87855 -10.66347 -10.63104 -10.36853 -10.25002 -9.87588 -9.80303 -9.62789 -9.46718 -9.25772 -9.11077 -8.63819 -8.53350 -7.01657 -6.11250 -4.08326 2.71633 3.25005 3.33732 3.36701 4.37265 4.58772 4.99572 5.03337 5.20757 5.22209 5.37921 5.40362 5.55291 5.59044 5.65740 5.80269 5.82245 5.89446 5.96844 5.97877 6.11563 6.20826 6.29155 6.33384 6.39255 6.42730 6.46611 6.56314 6.63208 6.75949 6.81695 6.91338 6.94124 7.02774 7.07748 7.15442 7.28627 7.43702 7.56078 8.06448 8.15831 8.44482 8.93078 9.50417 11.01250 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.008644 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.648100 B = 3238.540501 C = 4007.609405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.145 3.855 10 N -0.498 5.498 11 C 0.029 3.971 12 C -0.194 4.194 13 C -0.191 4.191 14 C 0.132 3.868 15 H 0.066 0.934 16 C -0.123 4.123 17 C -0.159 4.159 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.117 4.117 23 H 0.263 0.737 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -8.260 -3.854 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.096 0.904 9 C 0.018 3.982 10 N -0.219 5.219 11 C -0.081 4.081 12 C -0.232 4.232 13 C -0.230 4.230 14 C 0.025 3.975 15 H 0.084 0.916 16 C -0.142 4.142 17 C -0.178 4.178 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.096 -8.120 -3.919 12.118 hybrid contribution -0.601 0.806 0.299 1.049 sum 7.494 -7.314 -3.620 11.080 Atomic orbital electron populations 1.69908 1.06219 1.26840 1.50462 1.24909 0.94621 0.98804 0.94618 0.86960 0.80548 0.84212 0.78733 1.20173 1.21331 1.18849 1.21593 0.90179 0.94622 1.50958 0.90430 1.20421 0.94966 0.85815 0.96953 1.62296 1.56572 1.03208 0.99870 1.22339 1.03047 0.96197 0.86509 1.23710 0.92191 1.05011 1.02298 1.23040 0.96526 1.03502 0.99888 1.19914 0.97514 0.88562 0.91505 0.91617 1.21287 0.97753 0.96200 0.98958 1.21772 1.00833 0.99653 0.95560 1.21290 0.96869 1.02783 0.93307 1.21595 0.95182 0.99638 0.98346 1.21544 0.97033 0.95906 1.02309 1.21200 1.00253 0.95648 0.98250 1.21881 0.98568 1.01686 0.93246 0.92743 0.95049 0.95155 0.88351 0.85187 0.90700 0.90215 0.89510 0.91034 0.88105 0.89401 0.92552 0.92448 0.92980 0.92577 0.90120 0.93008 0.92135 0.91771 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 20.73 27.52 -169.99 -4.68 16.06 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.10 6.47 56.52 0.37 -5.74 16 7 C -0.53 -13.88 6.08 -34.44 -0.21 -14.09 16 8 H 0.08 2.23 6.43 -52.49 -0.34 1.89 16 9 C 0.14 3.32 3.17 -4.97 -0.02 3.30 16 10 N -0.50 -10.19 4.76 -222.38 -1.06 -11.25 16 11 C 0.03 0.56 5.49 -67.71 -0.37 0.19 16 12 C -0.19 -3.91 8.76 -26.73 -0.23 -4.14 16 13 C -0.19 -3.40 10.04 -26.73 -0.27 -3.67 16 14 C 0.13 2.51 1.02 -69.57 -0.07 2.43 16 15 H 0.07 1.45 5.71 -51.93 -0.30 1.15 16 16 C -0.12 -2.02 6.27 -36.29 -0.23 -2.24 16 17 C -0.16 -2.26 8.95 -34.99 -0.31 -2.57 16 18 C -0.11 -1.37 5.77 -27.18 -0.16 -1.53 16 19 C -0.11 -1.39 5.48 -26.59 -0.15 -1.53 16 20 C -0.13 -1.92 5.65 -27.70 -0.16 -2.08 16 21 C -0.12 -1.87 5.23 -27.64 -0.14 -2.01 16 22 C -0.12 -2.09 4.85 -26.64 -0.13 -2.22 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.75 5.20 -51.93 -0.27 0.48 16 25 H 0.03 0.71 5.64 -51.93 -0.29 0.42 16 26 H 0.10 1.78 5.94 -51.93 -0.31 1.47 16 27 H 0.13 3.04 4.85 -51.93 -0.25 2.79 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.58 7.92 -51.93 -0.41 1.17 16 31 H 0.07 1.17 6.00 -52.49 -0.32 0.85 16 32 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.09 1.23 4.47 -51.93 -0.23 1.00 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.67 7.85 -51.92 -0.41 0.26 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.30 4.29 -51.93 -0.22 1.08 16 39 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.07 5.06 -51.93 -0.26 0.81 16 42 H 0.08 1.67 5.33 -51.93 -0.28 1.40 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -27.27 296.70 -9.44 -36.71 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.41 Total: 7.78 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -2.54 Total: -28.28 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.28 Total: -36.74 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.68 Total: 16.06 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.27 -9.44 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390410714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.925 kcal (2) G-P(sol) polarization free energy of solvation -27.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds