Wall clock time and date at job start Mon Mar 30 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48506 * 109.47003 * 269.99913 * 3 2 1 5 5 H 1.48500 * 109.47383 * 29.99909 * 3 2 1 6 6 H 1.48500 * 109.47460 * 150.00333 * 3 2 1 7 7 C 1.37875 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00021 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47094 * 177.67202 * 9 7 2 11 11 C 1.46905 * 111.00151 * 290.65023 * 10 9 7 12 12 C 1.53000 * 117.49825 * 1.97456 * 11 10 9 13 13 C 1.52995 * 117.49881 * 293.35026 * 11 10 9 14 14 C 1.46903 * 110.99840 * 54.60864 * 10 9 7 15 15 H 1.08993 * 108.77703 * 295.55042 * 14 10 9 16 16 C 1.48677 * 108.88353 * 177.01832 * 14 10 9 17 17 C 1.28225 * 136.18418 * 238.21755 * 16 14 10 18 18 C 1.51377 * 121.79791 * 353.55997 * 17 16 14 19 19 C 1.53705 * 106.86163 * 281.76108 * 18 17 16 20 20 C 1.52568 * 109.50910 * 54.42303 * 19 18 17 21 21 C 1.51527 * 106.58063 * 64.35208 * 20 19 18 22 22 C 1.52687 * 112.98281 * 277.88887 * 21 20 19 23 23 H 0.96993 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46952 * 57.67939 * 9 7 2 25 25 H 1.08994 * 109.47265 * 297.67619 * 9 7 2 26 26 H 1.09000 * 115.54295 * 147.67695 * 11 10 9 27 27 H 1.08997 * 117.50034 * 359.97438 * 12 11 10 28 28 H 1.09000 * 117.49674 * 145.01355 * 12 11 10 29 29 H 1.09003 * 117.49787 * 214.97352 * 13 11 10 30 30 H 1.08995 * 117.49877 * 0.02562 * 13 11 10 31 31 H 1.08001 * 111.90858 * 58.52537 * 16 14 10 32 32 H 1.08001 * 119.10195 * 173.53689 * 17 16 14 33 33 H 1.08996 * 109.97466 * 41.09654 * 18 17 16 34 34 H 1.09004 * 109.97447 * 162.33669 * 18 17 16 35 35 H 1.09009 * 109.46122 * 174.43315 * 19 18 17 36 36 H 1.08998 * 109.46767 * 294.41179 * 19 18 17 37 37 H 1.09002 * 110.02707 * 183.61135 * 20 19 18 38 38 H 1.08999 * 110.03308 * 305.08404 * 20 19 18 39 39 H 1.08991 * 108.77850 * 38.79350 * 21 20 19 40 40 H 1.09001 * 108.77662 * 156.98763 * 21 20 19 41 41 H 1.09000 * 109.35550 * 82.70297 * 22 21 20 42 42 H 1.09003 * 109.35468 * 202.41828 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5778 0.0569 11 6 3.7212 -3.1819 1.3665 12 6 2.9618 -2.3331 2.3881 13 6 4.4545 -2.6080 2.5804 14 6 3.4274 -3.3844 -1.0285 15 1 2.3494 -3.4523 -0.8830 16 6 4.0079 -4.7519 -0.9704 17 6 4.6729 -5.5092 -1.7632 18 6 4.9331 -5.1234 -3.2036 19 6 3.6395 -5.4100 -3.9827 20 6 2.4722 -4.6898 -3.3145 21 6 2.7511 -3.2057 -3.4395 22 6 3.7051 -2.6859 -2.3667 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6439 0.8679 25 1 3.8745 -0.7173 -0.9105 26 1 3.5252 -4.2541 1.3572 27 1 2.6702 -1.3264 2.0888 28 1 2.2658 -2.8469 3.0512 29 1 4.7406 -3.3027 3.3703 30 1 5.1444 -1.7821 2.4076 31 1 3.8179 -5.2304 -0.0210 32 1 5.0581 -6.4479 -1.3930 33 1 5.1785 -4.0633 -3.2666 34 1 5.7519 -5.7195 -3.6067 35 1 3.7466 -5.0549 -5.0077 36 1 3.4489 -6.4832 -3.9882 37 1 1.5402 -4.9385 -3.8222 38 1 2.4124 -4.9711 -2.2631 39 1 3.1861 -3.0118 -4.4198 40 1 1.8083 -2.6639 -3.3631 41 1 4.7330 -2.8835 -2.6709 42 1 3.5638 -1.6117 -2.2474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390410714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:25 Heat of formation + Delta-G solvation = 52.757360 kcal Electronic energy + Delta-G solvation = -19708.334800 eV Core-core repulsion = 17075.745616 eV Total energy + Delta-G solvation = -2632.589184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97517 -38.87118 -35.33955 -34.47892 -33.84626 -31.73374 -29.36623 -28.11109 -26.06167 -24.23623 -23.00755 -22.06360 -21.04240 -20.74744 -19.48851 -18.48986 -17.77203 -16.63039 -16.55871 -15.89508 -15.67977 -15.37973 -14.70859 -14.52831 -14.35099 -14.20301 -13.59533 -13.20337 -13.01198 -12.79001 -12.61614 -12.54583 -12.50197 -12.16639 -12.03236 -11.87378 -11.77010 -11.66522 -11.51910 -11.22149 -11.01142 -10.71711 -10.67219 -10.49717 -9.84584 -8.71821 -8.25725 -6.25206 1.32692 1.35052 1.44685 1.49693 2.34251 3.02220 3.09125 3.52036 3.75096 4.05593 4.12680 4.17315 4.17591 4.22685 4.34540 4.40016 4.41825 4.48473 4.66312 4.73651 4.78702 4.89718 4.94775 5.01763 5.11876 5.12610 5.18614 5.19329 5.23752 5.26092 5.31860 5.36790 5.45232 5.51923 5.57056 5.64989 5.70466 5.88664 6.11556 6.26578 6.41404 6.52484 6.78075 7.36335 8.90149 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.008644 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.648100 B = 3238.540501 C = 4007.609405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.015 3.985 3 Si 0.929 3.071 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.249 1.249 7 C -0.512 4.512 8 H 0.038 0.962 9 C 0.156 3.844 10 N -0.497 5.497 11 C 0.017 3.983 12 C -0.215 4.215 13 C -0.160 4.160 14 C 0.142 3.858 15 H 0.021 0.979 16 C -0.150 4.150 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.132 4.132 21 C -0.111 4.111 22 C -0.114 4.114 23 H 0.262 0.738 24 H 0.028 0.972 25 H 0.032 0.968 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -9.653 -4.588 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.182 4.182 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.173 1.173 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.029 3.971 10 N -0.218 5.218 11 C -0.093 4.093 12 C -0.253 4.253 13 C -0.198 4.198 14 C 0.035 3.965 15 H 0.039 0.961 16 C -0.169 4.169 17 C -0.151 4.151 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.151 4.151 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.010 -9.527 -4.651 15.284 hybrid contribution -1.520 1.115 0.508 1.953 sum 9.490 -8.412 -4.144 13.341 Atomic orbital electron populations 1.70054 1.08008 1.27613 1.52951 1.25691 0.95288 1.02464 0.94788 0.85973 0.79727 0.79813 0.79091 1.19417 1.21376 1.17253 1.21626 0.91791 0.92864 1.48860 0.94393 1.20218 0.92478 0.87852 0.96597 1.62349 1.56108 1.02273 1.01066 1.22554 1.03703 0.96725 0.86306 1.23524 0.94596 1.03406 1.03788 1.23086 0.94105 1.03330 0.99234 1.19778 0.95075 0.90305 0.91363 0.96091 1.21005 1.00593 0.95175 1.00084 1.22133 0.97754 0.99459 0.95735 1.21355 0.97958 1.02622 0.92499 1.21546 0.93532 1.00282 0.98716 1.21533 0.98716 0.94853 1.01789 1.21170 0.98327 0.96563 0.98798 1.21865 1.00168 0.99656 0.93454 0.92872 0.95385 0.95041 0.87071 0.88713 0.90090 0.86830 0.89658 0.91271 0.85542 0.90462 0.89736 0.90784 0.91370 0.92107 0.91786 0.90724 0.95477 0.89731 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 2 C 0.02 0.87 5.47 84.66 0.46 1.33 16 3 Si 0.93 43.71 27.52 68.60 1.89 45.60 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.25 -10.99 6.47 99.48 0.64 -10.35 16 7 C -0.51 -27.97 6.08 25.60 0.16 -27.81 16 8 H 0.04 2.35 6.43 -2.91 -0.02 2.33 16 9 C 0.16 7.28 3.17 85.56 0.27 7.55 16 10 N -0.50 -20.47 4.76 -857.48 -4.08 -24.55 16 11 C 0.02 0.64 5.49 44.91 0.25 0.88 16 12 C -0.21 -8.77 8.76 30.60 0.27 -8.50 16 13 C -0.16 -5.37 10.04 30.59 0.31 -5.06 16 14 C 0.14 5.49 1.02 43.71 0.04 5.53 16 15 H 0.02 1.00 5.71 -2.39 -0.01 0.99 16 16 C -0.15 -4.72 6.27 27.70 0.17 -4.55 16 17 C -0.13 -3.31 8.95 28.54 0.26 -3.06 16 18 C -0.11 -2.37 5.77 30.30 0.17 -2.19 16 19 C -0.10 -2.24 5.48 30.69 0.17 -2.07 16 20 C -0.13 -3.76 5.65 29.97 0.17 -3.59 16 21 C -0.11 -3.60 5.23 30.01 0.16 -3.44 16 22 C -0.11 -4.13 4.85 30.65 0.15 -3.98 16 23 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 24 H 0.03 1.34 5.20 -2.39 -0.01 1.33 16 25 H 0.03 1.49 5.64 -2.39 -0.01 1.47 16 26 H 0.11 3.97 5.94 -2.39 -0.01 3.96 16 27 H 0.09 4.59 4.85 -2.39 -0.01 4.58 16 28 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.08 2.92 7.92 -2.39 -0.02 2.90 16 31 H 0.07 2.18 6.00 -2.91 -0.02 2.16 16 32 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.08 1.90 4.47 -2.39 -0.01 1.89 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.41 7.85 -2.38 -0.02 1.39 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 2.07 4.29 -2.39 -0.01 2.06 16 39 H 0.07 2.05 7.62 -2.39 -0.02 2.03 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 2.70 5.06 -2.39 -0.01 2.69 16 42 H 0.05 2.15 5.33 -2.39 -0.01 2.13 16 Total: -1.00 -61.97 296.70 2.05 -59.92 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.94 Total: 25.85 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.00 Total: -48.96 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.78 Total: -82.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.89 Total: 45.60 kcal Total: -61.97 2.05 -59.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390410714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.678 kcal (2) G-P(sol) polarization free energy of solvation -61.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds