Wall clock time and date at job start Mon Mar 30 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47159 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.47476 * 30.00429 * 3 2 1 6 6 H 1.48502 * 109.46889 * 150.00297 * 3 2 1 7 7 C 1.37876 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99293 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99986 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46793 * 174.37381 * 9 7 2 11 11 C 1.46899 * 110.99634 * 68.50298 * 10 9 7 12 12 C 1.53007 * 117.49668 * 130.58524 * 11 10 9 13 13 C 1.52997 * 59.99791 * 252.50593 * 12 11 10 14 14 C 1.46900 * 111.00008 * 304.54668 * 10 9 7 15 15 H 1.08997 * 108.85176 * 56.43078 * 14 10 9 16 16 C 1.48681 * 108.87361 * 174.98372 * 14 10 9 17 17 C 1.28216 * 136.20323 * 121.69489 * 16 14 10 18 18 C 1.51374 * 121.75197 * 6.43290 * 17 16 14 19 19 C 1.53705 * 106.95083 * 78.16290 * 18 17 16 20 20 C 1.52656 * 109.52667 * 305.71555 * 19 18 17 21 21 C 1.51515 * 106.50249 * 295.46069 * 20 19 18 22 22 C 1.52699 * 112.95208 * 82.12213 * 21 20 19 23 23 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47355 * 54.38016 * 9 7 2 25 25 H 1.09000 * 109.47394 * 294.37366 * 9 7 2 26 26 H 1.08998 * 115.55134 * 276.29012 * 11 10 9 27 27 H 1.08997 * 117.50027 * 359.97438 * 12 11 10 28 28 H 1.09004 * 117.49772 * 145.01548 * 12 11 10 29 29 H 1.09002 * 117.50193 * 252.51086 * 13 12 11 30 30 H 1.09000 * 117.49565 * 107.48967 * 13 12 11 31 31 H 1.08005 * 111.89647 * 301.71854 * 16 14 10 32 32 H 1.07993 * 119.12879 * 186.45665 * 17 16 14 33 33 H 1.08993 * 109.97633 * 197.54855 * 18 17 16 34 34 H 1.09000 * 109.97342 * 318.78168 * 18 17 16 35 35 H 1.08997 * 109.45504 * 65.63274 * 19 18 17 36 36 H 1.09000 * 109.45775 * 185.58743 * 19 18 17 37 37 H 1.09005 * 110.03914 * 176.23767 * 20 19 18 38 38 H 1.08997 * 110.18924 * 54.76251 * 20 19 18 39 39 H 1.09003 * 108.79258 * 321.22678 * 21 20 19 40 40 H 1.09000 * 108.78968 * 203.01526 * 21 20 19 41 41 H 1.09001 * 109.35604 * 277.28857 * 22 21 20 42 42 H 1.08994 * 109.24738 * 157.63034 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5723 0.1342 11 6 3.7025 -3.3577 -1.0707 12 6 4.8470 -4.1605 -1.6926 13 6 4.3318 -2.8985 -2.3875 14 6 3.4440 -3.2138 1.3325 15 1 2.3561 -3.1725 1.2804 16 6 3.8706 -4.6379 1.3581 17 6 4.5209 -5.3948 2.1632 18 6 4.9481 -4.9182 3.5349 19 6 3.7074 -4.9869 4.4397 20 6 2.5653 -4.2014 3.8000 21 6 3.0079 -2.7529 3.7614 22 6 3.9118 -2.4380 2.5716 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.5956 0.8342 25 1 3.8746 -0.7696 -0.9372 26 1 2.7027 -3.7896 -1.1144 27 1 5.8218 -4.1054 -1.2080 28 1 4.6003 -5.1208 -2.1454 29 1 3.7461 -3.0285 -3.2975 30 1 4.9675 -2.0136 -2.3598 31 1 3.5519 -5.1697 0.4738 32 1 4.7708 -6.3990 1.8543 33 1 5.7312 -5.5668 3.9273 34 1 5.3097 -3.8916 3.4765 35 1 3.4059 -6.0269 4.5641 36 1 3.9441 -4.5586 5.4137 37 1 1.6616 -4.2997 4.4016 38 1 2.3809 -4.5624 2.7883 39 1 3.5467 -2.5257 4.6813 40 1 2.1242 -2.1170 3.7088 41 1 4.9363 -2.7229 2.8108 42 1 3.8733 -1.3686 2.3642 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390410716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:28 Heat of formation + Delta-G solvation = 57.861657 kcal Electronic energy + Delta-G solvation = -19604.871276 eV Core-core repulsion = 16972.503431 eV Total energy + Delta-G solvation = -2632.367845 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43253 -37.17124 -34.15009 -32.65856 -32.31805 -30.43194 -27.33902 -26.80329 -24.56894 -22.46847 -21.63710 -20.79043 -19.69060 -19.40548 -17.98688 -16.60241 -15.96222 -15.35115 -14.93473 -14.45975 -14.07365 -13.89643 -13.59508 -13.10761 -12.95360 -12.38482 -11.94600 -11.66995 -11.57541 -11.33646 -11.21740 -11.13238 -10.96522 -10.84853 -10.67681 -10.32916 -10.26908 -10.12606 -9.83327 -9.61619 -9.55351 -9.34278 -9.00592 -8.65904 -8.51144 -7.17793 -6.10104 -4.08826 2.76246 3.26872 3.34809 3.37425 4.39184 4.46861 4.76982 5.03976 5.21986 5.24544 5.33712 5.42598 5.55159 5.59056 5.59708 5.64013 5.74888 5.85968 5.97960 6.03942 6.11901 6.13133 6.25472 6.30087 6.36377 6.42927 6.47546 6.52565 6.55991 6.66370 6.70069 6.76973 6.87888 6.98027 7.01683 7.09575 7.16814 7.48256 7.57402 8.06230 8.15872 8.45017 8.91635 9.52859 11.02855 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.008978 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.718673 B = 3117.814742 C = 4073.229838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.151 3.849 10 N -0.502 5.502 11 C 0.039 3.961 12 C -0.180 4.180 13 C -0.171 4.171 14 C 0.130 3.870 15 H 0.071 0.929 16 C -0.119 4.119 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -8.382 4.644 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.025 3.975 10 N -0.225 5.225 11 C -0.070 4.070 12 C -0.218 4.218 13 C -0.209 4.209 14 C 0.023 3.977 15 H 0.089 0.911 16 C -0.137 4.137 17 C -0.182 4.182 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.150 4.150 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.042 -8.225 4.684 13.090 hybrid contribution -0.710 0.851 -0.298 1.148 sum 8.332 -7.374 4.386 11.960 Atomic orbital electron populations 1.69925 1.06300 1.26872 1.50658 1.24935 0.94637 0.99023 0.94324 0.86876 0.80503 0.83883 0.78642 1.20271 1.21351 1.18748 1.21611 0.90508 0.94475 1.51445 0.90889 1.20297 0.94772 0.85583 0.96831 1.62317 1.57505 1.03020 0.99655 1.22027 0.94463 1.00036 0.90466 1.23049 0.99682 0.94661 1.04428 1.22874 1.03954 0.98217 0.95845 1.19991 0.98650 0.88702 0.90363 0.91140 1.21245 0.97587 0.96217 0.98696 1.21735 1.01393 0.99095 0.95943 1.21274 0.96961 1.02392 0.93548 1.21609 0.95594 0.99675 0.97878 1.21550 0.97047 0.95928 1.02253 1.21215 0.99915 0.96456 0.97828 1.21794 0.98602 1.01247 0.93350 0.92763 0.94645 0.95646 0.90186 0.88998 0.90032 0.89556 0.88924 0.90831 0.88165 0.92626 0.89511 0.92982 0.92484 0.92565 0.90019 0.92977 0.92241 0.91663 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.16 27.58 -169.99 -4.69 16.47 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.10 6.38 56.52 0.36 -5.74 16 7 C -0.54 -14.63 8.28 -34.44 -0.29 -14.91 16 8 H 0.07 2.16 6.55 -52.49 -0.34 1.81 16 9 C 0.15 3.54 3.78 -4.97 -0.02 3.52 16 10 N -0.50 -10.25 4.70 -222.37 -1.04 -11.29 16 11 C 0.04 0.75 2.89 -67.71 -0.20 0.56 16 12 C -0.18 -2.85 9.93 -26.73 -0.27 -3.11 16 13 C -0.17 -2.97 9.71 -26.73 -0.26 -3.23 16 14 C 0.13 2.49 1.19 -69.57 -0.08 2.40 16 15 H 0.07 1.59 5.59 -51.93 -0.29 1.30 16 16 C -0.12 -1.96 5.95 -36.28 -0.22 -2.17 16 17 C -0.16 -2.32 8.96 -34.99 -0.31 -2.63 16 18 C -0.10 -1.36 5.76 -27.19 -0.16 -1.52 16 19 C -0.11 -1.39 5.48 -26.54 -0.15 -1.54 16 20 C -0.13 -1.94 5.65 -27.66 -0.16 -2.09 16 21 C -0.12 -1.87 5.23 -27.64 -0.14 -2.01 16 22 C -0.11 -2.01 5.00 -26.63 -0.13 -2.14 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.04 0.85 4.83 -51.93 -0.25 0.60 16 25 H 0.03 0.61 6.70 -51.93 -0.35 0.26 16 26 H 0.08 1.65 7.94 -51.93 -0.41 1.24 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.64 7.63 -51.93 -0.40 1.24 16 31 H 0.07 1.23 6.57 -52.48 -0.34 0.89 16 32 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.21 4.49 -51.93 -0.23 0.98 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.34 4.30 -51.93 -0.22 1.12 16 39 H 0.05 0.74 7.62 -51.93 -0.40 0.34 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.08 5.06 -51.93 -0.26 0.82 16 42 H 0.07 1.49 5.72 -51.93 -0.30 1.19 16 LS Contribution 304.33 15.07 4.59 4.59 Total: -1.00 -28.19 304.33 -9.61 -37.80 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.76 Total: 5.56 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.47 Total: -26.92 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.27 Total: -37.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.69 Total: 16.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.19 -9.61 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390410716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.660 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds