Wall clock time and date at job start Mon Mar 30 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47159 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.47476 * 30.00429 * 3 2 1 6 6 H 1.48502 * 109.46889 * 150.00297 * 3 2 1 7 7 C 1.37876 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99293 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99986 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46793 * 174.37381 * 9 7 2 11 11 C 1.46899 * 110.99634 * 68.50298 * 10 9 7 12 12 C 1.53007 * 117.49668 * 130.58524 * 11 10 9 13 13 C 1.52997 * 59.99791 * 252.50593 * 12 11 10 14 14 C 1.46900 * 111.00008 * 304.54668 * 10 9 7 15 15 H 1.08997 * 108.85176 * 56.43078 * 14 10 9 16 16 C 1.48681 * 108.87361 * 174.98372 * 14 10 9 17 17 C 1.28216 * 136.20323 * 121.69489 * 16 14 10 18 18 C 1.51374 * 121.75197 * 6.43290 * 17 16 14 19 19 C 1.53705 * 106.95083 * 78.16290 * 18 17 16 20 20 C 1.52656 * 109.52667 * 305.71555 * 19 18 17 21 21 C 1.51515 * 106.50249 * 295.46069 * 20 19 18 22 22 C 1.52699 * 112.95208 * 82.12213 * 21 20 19 23 23 H 0.96999 * 119.99711 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47355 * 54.38016 * 9 7 2 25 25 H 1.09000 * 109.47394 * 294.37366 * 9 7 2 26 26 H 1.08998 * 115.55134 * 276.29012 * 11 10 9 27 27 H 1.08997 * 117.50027 * 359.97438 * 12 11 10 28 28 H 1.09004 * 117.49772 * 145.01548 * 12 11 10 29 29 H 1.09002 * 117.50193 * 252.51086 * 13 12 11 30 30 H 1.09000 * 117.49565 * 107.48967 * 13 12 11 31 31 H 1.08005 * 111.89647 * 301.71854 * 16 14 10 32 32 H 1.07993 * 119.12879 * 186.45665 * 17 16 14 33 33 H 1.08993 * 109.97633 * 197.54855 * 18 17 16 34 34 H 1.09000 * 109.97342 * 318.78168 * 18 17 16 35 35 H 1.08997 * 109.45504 * 65.63274 * 19 18 17 36 36 H 1.09000 * 109.45775 * 185.58743 * 19 18 17 37 37 H 1.09005 * 110.03914 * 176.23767 * 20 19 18 38 38 H 1.08997 * 110.18924 * 54.76251 * 20 19 18 39 39 H 1.09003 * 108.79258 * 321.22678 * 21 20 19 40 40 H 1.09000 * 108.78968 * 203.01526 * 21 20 19 41 41 H 1.09001 * 109.35604 * 277.28857 * 22 21 20 42 42 H 1.08994 * 109.24738 * 157.63034 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0013 -2.5723 0.1342 11 6 3.7025 -3.3577 -1.0707 12 6 4.8470 -4.1605 -1.6926 13 6 4.3318 -2.8985 -2.3875 14 6 3.4440 -3.2138 1.3325 15 1 2.3561 -3.1725 1.2804 16 6 3.8706 -4.6379 1.3581 17 6 4.5209 -5.3948 2.1632 18 6 4.9481 -4.9182 3.5349 19 6 3.7074 -4.9869 4.4397 20 6 2.5653 -4.2014 3.8000 21 6 3.0079 -2.7529 3.7614 22 6 3.9118 -2.4380 2.5716 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.5956 0.8342 25 1 3.8746 -0.7696 -0.9372 26 1 2.7027 -3.7896 -1.1144 27 1 5.8218 -4.1054 -1.2080 28 1 4.6003 -5.1208 -2.1454 29 1 3.7461 -3.0285 -3.2975 30 1 4.9675 -2.0136 -2.3598 31 1 3.5519 -5.1697 0.4738 32 1 4.7708 -6.3990 1.8543 33 1 5.7312 -5.5668 3.9273 34 1 5.3097 -3.8916 3.4765 35 1 3.4059 -6.0269 4.5641 36 1 3.9441 -4.5586 5.4137 37 1 1.6616 -4.2997 4.4016 38 1 2.3809 -4.5624 2.7883 39 1 3.5467 -2.5257 4.6813 40 1 2.1242 -2.1170 3.7088 41 1 4.9363 -2.7229 2.8108 42 1 3.8733 -1.3686 2.3642 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390410716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:28 Heat of formation + Delta-G solvation = 41.603443 kcal Electronic energy + Delta-G solvation = -19605.576285 eV Core-core repulsion = 16972.503431 eV Total energy + Delta-G solvation = -2633.072854 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.82893 -38.56931 -35.74991 -34.37555 -33.82868 -31.95138 -29.06667 -28.13040 -26.10234 -24.19143 -23.02048 -22.02002 -21.11039 -20.95304 -19.57036 -18.46280 -17.38240 -16.64470 -16.58050 -16.13252 -15.51071 -15.39465 -14.92998 -14.67923 -14.42695 -14.16272 -13.45363 -13.26733 -13.05127 -12.87273 -12.63711 -12.51890 -12.38407 -12.22336 -12.16813 -11.91652 -11.78313 -11.73383 -11.52990 -11.26070 -10.93428 -10.79153 -10.64673 -10.44989 -9.86048 -8.90211 -8.30055 -6.32976 1.32969 1.34279 1.45295 1.52360 2.32932 2.98763 3.10108 3.27195 3.80231 4.03894 4.12971 4.13939 4.18270 4.22483 4.33890 4.40065 4.47433 4.50126 4.72450 4.76816 4.80259 4.83091 4.93846 5.00864 5.06199 5.11769 5.16344 5.17593 5.21759 5.24049 5.28165 5.34365 5.38333 5.46159 5.52414 5.60271 5.70656 5.89746 6.09138 6.25756 6.39725 6.53319 6.72074 7.32416 8.86391 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.008978 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.718673 B = 3117.814742 C = 4073.229838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.029 0.971 9 C 0.160 3.840 10 N -0.495 5.495 11 C 0.007 3.993 12 C -0.140 4.140 13 C -0.174 4.174 14 C 0.140 3.860 15 H 0.020 0.980 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.110 4.110 23 H 0.264 0.736 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 -9.419 5.583 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.048 0.952 9 C 0.033 3.967 10 N -0.218 5.218 11 C -0.103 4.103 12 C -0.177 4.177 13 C -0.212 4.212 14 C 0.033 3.967 15 H 0.037 0.963 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.147 4.147 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.184 -9.284 5.620 16.316 hybrid contribution -1.731 1.036 -0.572 2.097 sum 10.453 -8.248 5.048 14.240 Atomic orbital electron populations 1.70082 1.08235 1.27878 1.52739 1.25842 0.95429 1.03082 0.94187 0.85808 0.79727 0.78865 0.79190 1.19317 1.21125 1.16789 1.21772 0.92535 0.92750 1.50053 0.95232 1.20115 0.91915 0.88032 0.96598 1.62372 1.56660 1.01903 1.00816 1.22019 0.94788 1.02371 0.91107 1.23061 0.98123 0.94874 1.01682 1.22973 1.03803 0.99299 0.95101 1.19833 0.95651 0.90912 0.90339 0.96268 1.20923 1.00600 0.94697 0.99945 1.22091 0.98197 0.99347 0.95707 1.21338 0.97810 1.02470 0.92650 1.21561 0.94099 1.00150 0.98242 1.21542 0.98592 0.95276 1.01566 1.21195 0.98576 0.96997 0.98212 1.21796 1.00200 0.99267 0.93466 0.92729 0.94621 0.95580 0.93128 0.88098 0.87618 0.88696 0.89083 0.91743 0.85711 0.89710 0.90369 0.91519 0.90599 0.92169 0.92084 0.90379 0.95428 0.89454 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.94 44.38 27.58 68.60 1.89 46.28 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.24 -10.71 6.38 99.48 0.64 -10.08 16 7 C -0.53 -30.37 8.28 25.60 0.21 -30.16 16 8 H 0.03 1.91 6.55 -2.91 -0.02 1.89 16 9 C 0.16 7.69 3.78 85.55 0.32 8.02 16 10 N -0.50 -20.65 4.70 -857.46 -4.03 -24.68 16 11 C 0.01 0.25 2.89 44.92 0.13 0.38 16 12 C -0.14 -4.14 9.93 30.60 0.30 -3.83 16 13 C -0.17 -5.90 9.71 30.59 0.30 -5.61 16 14 C 0.14 5.55 1.19 43.71 0.05 5.61 16 15 H 0.02 0.96 5.59 -2.39 -0.01 0.95 16 16 C -0.14 -4.64 5.95 27.71 0.16 -4.48 16 17 C -0.13 -3.45 8.96 28.54 0.26 -3.19 16 18 C -0.11 -2.33 5.76 30.30 0.17 -2.16 16 19 C -0.10 -2.26 5.48 30.72 0.17 -2.09 16 20 C -0.13 -3.86 5.65 29.99 0.17 -3.69 16 21 C -0.11 -3.62 5.23 30.01 0.16 -3.46 16 22 C -0.11 -3.96 5.00 30.66 0.15 -3.81 16 23 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.04 1.72 4.83 -2.39 -0.01 1.71 16 25 H 0.03 1.25 6.70 -2.39 -0.02 1.23 16 26 H 0.05 2.26 7.94 -2.39 -0.02 2.24 16 27 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.09 3.11 7.63 -2.39 -0.02 3.10 16 31 H 0.06 2.18 6.57 -2.91 -0.02 2.16 16 32 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.90 4.49 -2.39 -0.01 1.88 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.43 7.85 -2.39 -0.02 1.42 16 37 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 2.05 4.30 -2.39 -0.01 2.04 16 39 H 0.08 2.09 7.62 -2.39 -0.02 2.07 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 2.75 5.06 -2.39 -0.01 2.73 16 42 H 0.05 1.91 5.72 -2.39 -0.01 1.90 16 Total: -1.00 -64.79 304.33 2.11 -62.69 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.92 Total: 22.42 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.02 Total: -47.30 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.73 Total: -84.09 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.89 Total: 46.28 kcal Total: -64.79 2.11 -62.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390410716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.290 kcal (2) G-P(sol) polarization free energy of solvation -64.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds