Wall clock time and date at job start Mon Mar 30 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43053 * 61.08406 * 9 7 2 11 11 C 1.54887 * 110.48465 * 298.54974 * 9 7 2 12 12 C 1.54883 * 102.74816 * 203.37809 * 11 9 7 13 13 C 1.54268 * 104.19781 * 37.93884 * 12 11 9 14 14 H 1.09002 * 110.03200 * 95.67509 * 13 12 11 15 15 N 1.46895 * 110.03401 * 217.10715 * 13 12 11 16 16 C 1.46901 * 111.00255 * 273.54527 * 15 13 12 17 17 H 1.09000 * 109.35396 * 35.27547 * 16 15 13 18 18 C 1.52884 * 109.35669 * 275.69527 * 16 15 13 19 19 C 1.53304 * 108.58007 * 185.26610 * 18 16 15 20 20 C 1.52873 * 108.58721 * 74.44210 * 19 18 16 21 21 C 1.52071 * 110.51772 * 305.10980 * 20 19 18 22 22 H 1.09000 * 114.26385 * 166.23101 * 21 20 19 23 23 C 1.52306 * 119.83817 * 310.44980 * 21 20 19 24 24 C 1.52067 * 120.01824 * 21.70033 * 21 20 19 25 25 H 1.08996 * 117.25273 * 144.43826 * 24 21 20 26 26 C 1.53875 * 106.59885 * 336.39254 * 13 12 11 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09003 * 110.75651 * 321.68952 * 11 9 7 29 29 H 1.08998 * 110.75998 * 84.87451 * 11 9 7 30 30 H 1.09000 * 110.48985 * 156.61843 * 12 11 9 31 31 H 1.09000 * 110.49072 * 279.26132 * 12 11 9 32 32 H 1.00904 * 111.00052 * 149.59136 * 15 13 12 33 33 H 1.08995 * 109.61576 * 304.99593 * 18 16 15 34 34 H 1.08995 * 109.61814 * 65.53909 * 18 16 15 35 35 H 1.08994 * 109.61432 * 314.71270 * 19 18 16 36 36 H 1.08999 * 109.61564 * 194.17221 * 19 18 16 37 37 H 1.08998 * 109.26361 * 184.83981 * 20 19 18 38 38 H 1.09001 * 109.23977 * 65.35925 * 20 19 18 39 39 H 1.09000 * 117.53544 * 2.44351 * 23 21 20 40 40 H 1.08992 * 117.53912 * 217.19843 * 23 21 20 41 41 H 1.08999 * 110.03056 * 240.71446 * 26 13 12 42 42 H 1.08998 * 110.03135 * 119.28179 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6335 -2.5820 -0.8938 11 6 0.3791 -2.6216 1.2747 12 6 0.1942 -4.1528 1.4164 13 6 1.5579 -4.7391 0.9965 14 1 2.1723 -4.9237 1.8777 15 7 1.3600 -5.9885 0.2496 16 6 1.2609 -7.1365 1.1608 17 1 0.7476 -6.8309 2.0725 18 6 2.6656 -7.6262 1.5134 19 6 2.5414 -8.9012 2.3556 20 6 2.1380 -10.0546 1.4369 21 6 0.8709 -9.7078 0.6709 22 1 0.6573 -10.3726 -0.1661 23 6 -0.3414 -9.1661 1.4170 24 6 0.4690 -8.2531 0.4840 25 1 -0.0057 -7.9837 -0.4595 26 6 2.2299 -3.6877 0.0962 27 1 -0.4850 -0.8401 -0.0004 28 1 0.9008 -2.2138 2.1406 29 1 -0.5811 -2.1250 1.1350 30 1 -0.0322 -4.4158 2.4497 31 1 -0.5938 -4.5052 0.7508 32 1 2.0962 -6.1260 -0.4266 33 1 3.2176 -7.8438 0.5991 34 1 3.1877 -6.8593 2.0855 35 1 1.7796 -8.7605 3.1223 36 1 3.4995 -9.1248 2.8246 37 1 1.9626 -10.9477 2.0367 38 1 2.9441 -10.2491 0.7294 39 1 -0.2420 -9.0054 2.4905 40 1 -1.3264 -9.4865 1.0778 41 1 2.4092 -4.1045 -0.8949 42 1 3.1704 -3.3620 0.5406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393508900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:46 Heat of formation + Delta-G solvation = -4.701417 kcal Electronic energy + Delta-G solvation = -18665.980325 eV Core-core repulsion = 16030.899541 eV Total energy + Delta-G solvation = -2635.080783 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87991 -37.66704 -34.50227 -32.91329 -31.96551 -28.85366 -28.10911 -25.96845 -23.84025 -23.40384 -22.70277 -21.04373 -19.43772 -19.27879 -18.40983 -16.84611 -16.52690 -15.31572 -14.61259 -14.50214 -13.94716 -13.76637 -13.65743 -13.55963 -13.41546 -12.60884 -12.33139 -12.15470 -11.69746 -11.54826 -11.33448 -11.08721 -10.86368 -10.74786 -10.62023 -10.39843 -10.24852 -10.11886 -9.99031 -9.82399 -9.66999 -9.59989 -9.36985 -8.36114 -8.24766 -8.02738 -6.23194 -3.96205 3.47297 3.48914 3.67653 3.70133 4.25933 4.53807 4.59446 4.68010 4.89890 5.00610 5.04924 5.10826 5.29027 5.39878 5.41548 5.51992 5.54448 5.60693 5.64982 5.70662 5.81725 5.88805 5.92013 5.98103 6.06514 6.12513 6.18435 6.26535 6.35904 6.45459 6.55261 6.64466 6.80331 6.91249 7.08577 7.16487 7.43197 7.54838 7.70753 7.83395 8.35205 8.52981 8.98949 9.75725 11.13451 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051965 B = 0.004264 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.691342 B = 6565.082607 C = 6812.510144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.019 3.981 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.595 4.595 8 H 0.046 0.954 9 C 0.037 3.963 10 H 0.021 0.979 11 C -0.115 4.115 12 C -0.113 4.113 13 C 0.085 3.915 14 H 0.034 0.966 15 N -0.677 5.677 16 C 0.120 3.880 17 H 0.077 0.923 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.087 4.087 21 C -0.146 4.146 22 H 0.095 0.905 23 C -0.185 4.185 24 C -0.127 4.127 25 H 0.110 0.890 26 C -0.109 4.109 27 H 0.274 0.726 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -18.583 3.626 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.633 4.633 8 H 0.064 0.936 9 C 0.019 3.981 10 H 0.039 0.961 11 C -0.153 4.153 12 C -0.152 4.152 13 C -0.024 4.024 14 H 0.052 0.948 15 N -0.307 5.307 16 C 0.009 3.991 17 H 0.095 0.905 18 C -0.187 4.187 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.164 4.164 22 H 0.113 0.887 23 C -0.222 4.222 24 C -0.146 4.146 25 H 0.128 0.872 26 C -0.147 4.147 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.114 -16.830 3.561 17.332 hybrid contribution 1.121 -1.852 0.312 2.187 sum 3.235 -18.681 3.874 19.351 Atomic orbital electron populations 1.70793 1.06844 1.31196 1.46475 1.25731 0.96596 1.02373 0.93801 0.83606 0.74927 0.75704 0.76382 1.20865 1.21614 1.21597 1.22042 0.93841 0.91730 1.55704 0.93567 1.19522 0.92792 0.92731 0.93098 0.96128 1.22675 1.00429 0.91870 1.00372 1.22460 0.96374 0.97633 0.98686 1.22257 0.96638 0.88666 0.94875 0.94778 1.60778 1.51975 1.01249 1.16711 1.21032 0.93557 0.89536 0.94957 0.90471 1.22325 0.98492 0.97562 1.00370 1.21550 1.01182 0.94932 0.97969 1.20835 0.95779 0.97907 0.97892 1.21842 0.96055 0.96801 1.01747 0.88698 1.23091 0.95395 1.05432 0.98279 1.22284 1.01811 0.89779 1.00727 0.87179 1.22329 0.99315 0.95867 0.97169 0.91379 0.92939 0.92371 0.94073 0.91559 0.84446 0.91583 0.91950 0.91888 0.91971 0.91848 0.91670 0.89046 0.89135 0.93238 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.78 13.41 55.43 0.74 -27.03 16 2 C 0.02 0.55 5.33 -17.82 -0.09 0.46 16 3 Si 1.06 25.44 29.90 -169.99 -5.08 20.35 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.59 -16.86 8.49 -34.44 -0.29 -17.16 16 8 H 0.05 1.30 7.58 -52.48 -0.40 0.90 16 9 C 0.04 0.94 2.44 -90.11 -0.22 0.72 16 10 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 11 C -0.11 -2.71 5.55 -24.74 -0.14 -2.84 16 12 C -0.11 -2.21 6.32 -25.07 -0.16 -2.36 16 13 C 0.08 1.52 3.03 -66.60 -0.20 1.32 16 14 H 0.03 0.60 7.16 -51.93 -0.37 0.23 16 15 N -0.68 -10.42 5.96 -98.79 -0.59 -11.01 16 16 C 0.12 1.56 2.25 -67.92 -0.15 1.40 16 17 H 0.08 1.10 7.63 -51.93 -0.40 0.70 16 18 C -0.15 -1.70 5.16 -26.63 -0.14 -1.84 16 19 C -0.12 -1.15 5.71 -26.64 -0.15 -1.30 16 20 C -0.09 -0.78 5.93 -27.27 -0.16 -0.94 16 21 C -0.15 -1.46 6.00 -91.92 -0.55 -2.01 16 22 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.18 -1.93 9.66 -26.75 -0.26 -2.19 16 24 C -0.13 -1.51 5.82 -90.91 -0.53 -2.04 16 25 H 0.11 1.42 8.10 -51.93 -0.42 1.00 16 26 C -0.11 -2.28 6.04 -25.61 -0.15 -2.44 16 27 H 0.27 8.20 5.24 -40.82 -0.21 7.99 16 28 H 0.05 1.29 8.05 -51.93 -0.42 0.87 16 29 H 0.06 1.45 6.30 -51.93 -0.33 1.13 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.34 4.94 7.73 -39.29 -0.30 4.63 16 33 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.06 0.62 7.11 -51.93 -0.37 0.25 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.94 7.26 -51.93 -0.38 0.56 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.99 7.49 -51.93 -0.39 0.60 16 42 H 0.05 1.18 7.68 -51.93 -0.40 0.78 16 LS Contribution 316.03 15.07 4.76 4.76 Total: -1.00 -29.27 316.03 -10.72 -39.99 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.35 Total: 4.15 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -3.20 Total: -31.21 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.15 Total: -38.04 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.27 -10.72 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.288 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds