Wall clock time and date at job start Mon Mar 30 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43053 * 61.08406 * 9 7 2 11 11 C 1.54887 * 110.48465 * 298.54974 * 9 7 2 12 12 C 1.54883 * 102.74816 * 203.37809 * 11 9 7 13 13 C 1.54268 * 104.19781 * 37.93884 * 12 11 9 14 14 H 1.09002 * 110.03200 * 95.67509 * 13 12 11 15 15 N 1.46895 * 110.03401 * 217.10715 * 13 12 11 16 16 C 1.46901 * 111.00255 * 273.54527 * 15 13 12 17 17 H 1.09000 * 109.35396 * 35.27547 * 16 15 13 18 18 C 1.52884 * 109.35669 * 275.69527 * 16 15 13 19 19 C 1.53304 * 108.58007 * 185.26610 * 18 16 15 20 20 C 1.52873 * 108.58721 * 74.44210 * 19 18 16 21 21 C 1.52071 * 110.51772 * 305.10980 * 20 19 18 22 22 H 1.09000 * 114.26385 * 166.23101 * 21 20 19 23 23 C 1.52306 * 119.83817 * 310.44980 * 21 20 19 24 24 C 1.52067 * 120.01824 * 21.70033 * 21 20 19 25 25 H 1.08996 * 117.25273 * 144.43826 * 24 21 20 26 26 C 1.53875 * 106.59885 * 336.39254 * 13 12 11 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09003 * 110.75651 * 321.68952 * 11 9 7 29 29 H 1.08998 * 110.75998 * 84.87451 * 11 9 7 30 30 H 1.09000 * 110.48985 * 156.61843 * 12 11 9 31 31 H 1.09000 * 110.49072 * 279.26132 * 12 11 9 32 32 H 1.00904 * 111.00052 * 149.59136 * 15 13 12 33 33 H 1.08995 * 109.61576 * 304.99593 * 18 16 15 34 34 H 1.08995 * 109.61814 * 65.53909 * 18 16 15 35 35 H 1.08994 * 109.61432 * 314.71270 * 19 18 16 36 36 H 1.08999 * 109.61564 * 194.17221 * 19 18 16 37 37 H 1.08998 * 109.26361 * 184.83981 * 20 19 18 38 38 H 1.09001 * 109.23977 * 65.35925 * 20 19 18 39 39 H 1.09000 * 117.53544 * 2.44351 * 23 21 20 40 40 H 1.08992 * 117.53912 * 217.19843 * 23 21 20 41 41 H 1.08999 * 110.03056 * 240.71446 * 26 13 12 42 42 H 1.08998 * 110.03135 * 119.28179 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6335 -2.5820 -0.8938 11 6 0.3791 -2.6216 1.2747 12 6 0.1942 -4.1528 1.4164 13 6 1.5579 -4.7391 0.9965 14 1 2.1723 -4.9237 1.8777 15 7 1.3600 -5.9885 0.2496 16 6 1.2609 -7.1365 1.1608 17 1 0.7476 -6.8309 2.0725 18 6 2.6656 -7.6262 1.5134 19 6 2.5414 -8.9012 2.3556 20 6 2.1380 -10.0546 1.4369 21 6 0.8709 -9.7078 0.6709 22 1 0.6573 -10.3726 -0.1661 23 6 -0.3414 -9.1661 1.4170 24 6 0.4690 -8.2531 0.4840 25 1 -0.0057 -7.9837 -0.4595 26 6 2.2299 -3.6877 0.0962 27 1 -0.4850 -0.8401 -0.0004 28 1 0.9008 -2.2138 2.1406 29 1 -0.5811 -2.1250 1.1350 30 1 -0.0322 -4.4158 2.4497 31 1 -0.5938 -4.5052 0.7508 32 1 2.0962 -6.1260 -0.4266 33 1 3.2176 -7.8438 0.5991 34 1 3.1877 -6.8593 2.0855 35 1 1.7796 -8.7605 3.1223 36 1 3.4995 -9.1248 2.8246 37 1 1.9626 -10.9477 2.0367 38 1 2.9441 -10.2491 0.7294 39 1 -0.2420 -9.0054 2.4905 40 1 -1.3264 -9.4865 1.0778 41 1 2.4092 -4.1045 -0.8949 42 1 3.1704 -3.3620 0.5406 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393508900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:46 Heat of formation + Delta-G solvation = -20.217519 kcal Electronic energy + Delta-G solvation = -18666.653153 eV Core-core repulsion = 16030.899541 eV Total energy + Delta-G solvation = -2635.753612 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84221 -39.25152 -36.02044 -34.15156 -33.43374 -30.09319 -29.94953 -27.42594 -25.72755 -24.59975 -23.57133 -21.98682 -21.30682 -20.80122 -19.32397 -18.95146 -17.54994 -16.78493 -15.82858 -15.70373 -15.60380 -15.26019 -14.96017 -14.65469 -14.39237 -14.08960 -13.82733 -13.68945 -13.03662 -12.78138 -12.56489 -12.52294 -12.18976 -12.11945 -11.93741 -11.90662 -11.78155 -11.69221 -11.53829 -11.36378 -11.30779 -10.71555 -10.55813 -10.48007 -10.40299 -9.26618 -8.52873 -6.27455 1.53275 1.61343 1.80376 2.60076 2.87132 3.11510 3.23992 3.69717 3.82327 3.88080 3.92937 4.08299 4.12331 4.21515 4.25940 4.27869 4.42818 4.51181 4.59014 4.66090 4.71545 4.76904 4.83831 4.91961 4.93252 5.01302 5.03924 5.07590 5.16024 5.20813 5.21477 5.26189 5.31049 5.37685 5.41918 5.45163 5.50658 5.71093 6.13970 6.22931 6.30982 6.52260 6.71508 7.53336 8.83835 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.051965 B = 0.004264 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.691342 B = 6565.082607 C = 6812.510144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.032 4.032 3 Si 1.112 2.888 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.611 4.611 8 H 0.044 0.956 9 C 0.026 3.974 10 H -0.011 1.011 11 C -0.108 4.108 12 C -0.102 4.102 13 C 0.100 3.900 14 H 0.045 0.955 15 N -0.681 5.681 16 C 0.123 3.877 17 H 0.066 0.934 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.086 4.086 21 C -0.133 4.133 22 H 0.104 0.896 23 C -0.182 4.182 24 C -0.146 4.146 25 H 0.096 0.904 26 C -0.101 4.101 27 H 0.263 0.737 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.342 0.658 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -20.326 4.294 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.230 4.230 3 Si 0.934 3.066 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.649 4.649 8 H 0.062 0.938 9 C 0.007 3.993 10 H 0.007 0.993 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.009 4.009 14 H 0.063 0.937 15 N -0.312 5.312 16 C 0.013 3.987 17 H 0.084 0.916 18 C -0.184 4.184 19 C -0.154 4.154 20 C -0.123 4.123 21 C -0.151 4.151 22 H 0.122 0.878 23 C -0.219 4.219 24 C -0.164 4.164 25 H 0.114 0.886 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.335 -18.612 4.228 19.375 hybrid contribution 0.715 -1.342 0.071 1.522 sum 4.050 -19.954 4.299 20.809 Atomic orbital electron populations 1.70903 1.07836 1.30705 1.48500 1.27185 0.96679 1.06215 0.92927 0.83003 0.74165 0.71685 0.77748 1.21083 1.19677 1.19792 1.22447 0.94022 0.93279 1.55106 0.93777 1.19540 0.93566 0.93695 0.92505 0.99274 1.22470 0.98555 0.94818 0.98787 1.22345 0.97317 0.94333 0.99991 1.21957 0.95235 0.89033 0.94715 0.93668 1.60693 1.52309 1.01092 1.17153 1.21026 0.94723 0.88921 0.94031 0.91589 1.22264 0.97103 0.98287 1.00708 1.21541 1.01891 0.94157 0.97775 1.20874 0.95354 0.98112 0.97999 1.21941 0.96257 0.95139 1.01790 0.87769 1.23150 0.96018 1.04540 0.98198 1.22156 1.03062 0.90601 1.00613 0.88569 1.22188 0.98117 0.95089 0.98462 0.92525 0.94308 0.94714 0.91964 0.91963 0.83798 0.91340 0.92773 0.92067 0.90701 0.90297 0.90949 0.88805 0.88502 0.92431 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.41 21.45 0.29 -58.31 16 2 C -0.03 -1.86 5.33 84.65 0.45 -1.41 16 3 Si 1.11 51.17 29.90 68.60 2.05 53.22 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.61 -35.20 8.49 25.60 0.22 -34.98 16 8 H 0.04 2.50 7.58 -2.91 -0.02 2.48 16 9 C 0.03 1.33 2.44 -10.46 -0.03 1.31 16 10 H -0.01 -0.63 8.06 -2.38 -0.02 -0.65 16 11 C -0.11 -5.20 5.55 31.88 0.18 -5.03 16 12 C -0.10 -3.92 6.32 31.67 0.20 -3.72 16 13 C 0.10 3.51 3.03 45.64 0.14 3.65 16 14 H 0.05 1.51 7.16 -2.39 -0.02 1.49 16 15 N -0.68 -20.21 5.96 -466.47 -2.78 -22.99 16 16 C 0.12 3.00 2.25 44.78 0.10 3.11 16 17 H 0.07 1.77 7.63 -2.39 -0.02 1.75 16 18 C -0.14 -3.00 5.16 30.66 0.16 -2.84 16 19 C -0.12 -1.92 5.71 30.65 0.17 -1.74 16 20 C -0.09 -1.27 5.93 30.25 0.18 -1.09 16 21 C -0.13 -2.30 6.00 -11.64 -0.07 -2.37 16 22 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 23 C -0.18 -3.41 9.66 30.58 0.30 -3.12 16 24 C -0.15 -3.22 5.82 -10.98 -0.06 -3.29 16 25 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 26 C -0.10 -4.20 6.04 31.32 0.19 -4.02 16 27 H 0.26 16.48 5.24 -92.71 -0.49 15.99 16 28 H 0.04 1.94 8.05 -2.39 -0.02 1.92 16 29 H 0.03 1.81 6.30 -2.39 -0.02 1.79 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 32 H 0.34 9.60 7.73 -89.69 -0.69 8.90 16 33 H 0.07 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.05 1.21 7.48 -2.39 -0.02 1.19 16 35 H 0.06 1.05 7.11 -2.39 -0.02 1.03 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.72 7.26 -2.39 -0.02 1.70 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 2.28 7.49 -2.39 -0.02 2.26 16 42 H 0.05 2.16 7.68 -2.39 -0.02 2.14 16 Total: -1.00 -63.66 316.03 2.25 -61.41 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.57 Total: 22.22 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 2.12 Total: -55.55 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -2.49 Total: -81.31 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -63.66 2.25 -61.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.193 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds