Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99630 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00496 * 3 2 1 5 5 H 1.48499 * 109.46941 * 30.00453 * 3 2 1 6 6 H 1.48495 * 109.46868 * 150.00350 * 3 2 1 7 7 C 1.37871 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99624 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.81986 * 56.65868 * 9 7 2 11 11 C 1.55238 * 110.89800 * 293.21103 * 9 7 2 12 12 C 1.54266 * 104.23333 * 203.79412 * 11 9 7 13 13 C 1.53869 * 106.59800 * 23.61579 * 12 11 9 14 14 H 1.09001 * 110.02983 * 240.71432 * 13 12 11 15 15 N 1.46899 * 110.07751 * 119.30541 * 13 12 11 16 16 C 1.46901 * 111.00065 * 87.80629 * 15 13 12 17 17 H 1.09000 * 109.35402 * 35.27931 * 16 15 13 18 18 C 1.52882 * 109.35584 * 275.69941 * 16 15 13 19 19 C 1.56478 * 106.95584 * 183.54609 * 18 16 15 20 20 C 1.52869 * 107.86843 * 75.81123 * 19 18 16 21 21 C 1.52077 * 110.50912 * 304.49736 * 20 19 18 22 22 H 1.09004 * 114.26470 * 166.23491 * 21 20 19 23 23 C 1.49176 * 119.09457 * 309.91741 * 21 20 19 24 24 C 1.52064 * 120.02477 * 21.69837 * 21 20 19 25 25 H 1.09004 * 117.25810 * 144.43742 * 24 21 20 26 26 C 1.54266 * 106.60031 * 359.97438 * 13 12 11 27 27 H 0.96990 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.09005 * 110.46917 * 85.10442 * 11 9 7 29 29 H 1.09007 * 110.58541 * 322.54362 * 11 9 7 30 30 H 1.08999 * 110.03060 * 264.32313 * 12 11 9 31 31 H 1.09003 * 110.02805 * 142.89578 * 12 11 9 32 32 H 1.00897 * 110.99938 * 323.85984 * 15 13 12 33 33 H 1.08999 * 109.61495 * 304.99546 * 18 16 15 34 34 H 1.09004 * 109.62071 * 65.54226 * 18 16 15 35 35 H 1.09004 * 110.47969 * 316.00980 * 19 18 16 36 36 H 1.09004 * 109.46348 * 195.02556 * 19 18 16 37 37 H 1.08992 * 109.26912 * 184.22995 * 20 19 18 38 38 H 1.08996 * 109.24342 * 64.73939 * 20 19 18 39 39 H 1.08997 * 117.01417 * 2.54074 * 23 21 20 40 40 H 1.08998 * 117.72008 * 217.92345 * 23 21 20 41 41 H 1.09002 * 110.48629 * 95.07240 * 26 13 12 42 42 H 1.08998 * 110.48744 * 217.58143 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8993 -0.6341 0.8499 11 6 4.0648 -0.6220 -1.3341 12 6 5.4783 -1.2290 -1.4496 13 6 5.4756 -2.5136 -0.6026 14 1 6.2143 -2.4363 0.1952 15 7 5.7702 -3.6769 -1.4497 16 6 7.2184 -3.9027 -1.5488 17 1 7.6894 -3.6487 -0.5992 18 6 7.7955 -3.0143 -2.6511 19 6 9.3159 -3.3647 -2.7704 20 6 9.4330 -4.7014 -3.5030 21 6 8.6202 -5.7719 -2.7916 22 1 8.4643 -6.6785 -3.3764 23 6 8.7934 -5.9570 -1.3216 24 6 7.4809 -5.3731 -1.8667 25 1 6.6031 -6.0190 -1.8488 26 6 4.0608 -2.6420 -0.0012 27 1 -0.4850 0.8399 0.0004 28 1 4.1193 0.4657 -1.2887 29 1 3.4444 -0.9372 -2.1731 30 1 6.2183 -0.5283 -1.0631 31 1 5.6978 -1.4684 -2.4902 32 1 5.3573 -3.5721 -2.3644 33 1 7.2627 -3.1965 -3.5844 34 1 7.6945 -1.9667 -2.3673 35 1 9.7667 -3.4486 -1.7816 36 1 9.8238 -2.5882 -3.3424 37 1 10.4795 -5.0047 -3.5327 38 1 9.0629 -4.5864 -4.5217 39 1 9.4756 -5.2753 -0.8137 40 1 8.7689 -6.9748 -0.9324 41 1 3.4387 -3.2853 -0.6236 42 1 4.1123 -3.0309 1.0157 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393508902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = 3.196203 kcal Electronic energy + Delta-G solvation = -18750.243538 eV Core-core repulsion = 16115.505222 eV Total energy + Delta-G solvation = -2634.738317 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99504 -37.82615 -34.38642 -32.71402 -32.06087 -29.17530 -28.31224 -26.51013 -24.07718 -23.21553 -22.56221 -21.07738 -19.76629 -19.19355 -18.36604 -16.72266 -16.65368 -15.17490 -14.96469 -14.37293 -14.24132 -14.01506 -13.70655 -13.35946 -12.88295 -12.71246 -12.52554 -12.33718 -12.06647 -11.63831 -11.48636 -11.20319 -11.05404 -10.99547 -10.85731 -10.41121 -10.31640 -10.03916 -9.96475 -9.85822 -9.64254 -9.58836 -9.33007 -8.94574 -8.48850 -8.00830 -6.01841 -3.99782 3.31304 3.40116 3.42525 3.71983 4.23401 4.46728 4.54113 4.70350 4.84871 5.00399 5.08244 5.11755 5.23378 5.28352 5.37487 5.42894 5.48224 5.55975 5.60149 5.62115 5.67827 5.82188 5.90131 5.96853 6.04571 6.10580 6.14915 6.19356 6.28489 6.33833 6.44677 6.50839 6.62897 6.78453 6.90661 6.96602 7.24609 7.47028 7.66596 7.71882 7.84997 8.60777 9.03577 9.61825 11.11704 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.046380 B = 0.004713 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.569437 B = 5939.167816 C = 6286.849943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.010 3.990 10 H 0.031 0.969 11 C -0.127 4.127 12 C -0.151 4.151 13 C 0.084 3.916 14 H 0.067 0.933 15 N -0.677 5.677 16 C 0.119 3.881 17 H 0.075 0.925 18 C -0.150 4.150 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.144 4.144 22 H 0.094 0.906 23 C -0.183 4.183 24 C -0.131 4.131 25 H 0.112 0.888 26 C -0.092 4.092 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.342 0.658 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.312 -7.879 -5.796 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.092 0.908 9 C -0.009 4.009 10 H 0.049 0.951 11 C -0.165 4.165 12 C -0.190 4.190 13 C -0.026 4.026 14 H 0.085 0.915 15 N -0.306 5.306 16 C 0.009 3.991 17 H 0.094 0.906 18 C -0.190 4.190 19 C -0.158 4.158 20 C -0.126 4.126 21 C -0.162 4.162 22 H 0.112 0.888 23 C -0.220 4.220 24 C -0.150 4.150 25 H 0.130 0.870 26 C -0.130 4.130 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.049 -8.237 -5.267 21.412 hybrid contribution 0.703 1.708 -0.685 1.970 sum 19.752 -6.528 -5.952 21.638 Atomic orbital electron populations 1.69910 1.06280 1.26773 1.51377 1.25004 0.94608 0.98944 0.94603 0.86892 0.80144 0.83858 0.78239 1.20532 1.22143 1.19021 1.21035 0.88790 0.94347 1.50080 0.90830 1.20171 0.96325 0.92054 0.92349 0.95111 1.22796 0.93714 0.98190 1.01769 1.22985 0.99056 0.98206 0.98793 1.22376 0.98947 0.86965 0.94291 0.91490 1.60711 1.09583 1.41874 1.18451 1.21093 0.88835 0.91783 0.97413 0.90641 1.23008 0.95705 1.00198 1.00044 1.22127 0.96361 0.96715 1.00557 1.20861 0.99009 0.93828 0.98928 1.21344 1.01447 1.00435 0.93014 0.88752 1.22592 1.00736 1.02086 0.96585 1.22266 0.92185 0.96986 1.03529 0.86962 1.22263 0.92731 0.98854 0.99153 0.92805 0.94080 0.91686 0.93095 0.92754 0.83891 0.91273 0.91519 0.91772 0.92095 0.91965 0.91707 0.89106 0.89237 0.91354 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 22.01 24.81 -169.99 -4.22 17.79 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.27 -6.37 6.45 56.52 0.36 -6.01 16 7 C -0.50 -14.23 9.09 -34.44 -0.31 -14.55 16 8 H 0.07 2.25 8.01 -52.48 -0.42 1.83 16 9 C 0.01 0.24 2.28 -89.60 -0.20 0.04 16 10 H 0.03 0.74 7.02 -51.93 -0.36 0.38 16 11 C -0.13 -2.67 5.34 -24.88 -0.13 -2.80 16 12 C -0.15 -2.53 5.14 -25.62 -0.13 -2.66 16 13 C 0.08 1.38 3.22 -66.60 -0.21 1.16 16 14 H 0.07 1.07 7.43 -51.93 -0.39 0.68 16 15 N -0.68 -9.73 5.97 -98.79 -0.59 -10.32 16 16 C 0.12 1.44 2.35 -67.92 -0.16 1.28 16 17 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 18 C -0.15 -1.65 4.53 -24.92 -0.11 -1.76 16 19 C -0.12 -1.11 5.81 -24.93 -0.14 -1.26 16 20 C -0.09 -0.78 5.92 -27.27 -0.16 -0.94 16 21 C -0.14 -1.37 5.91 -93.45 -0.55 -1.93 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.18 -1.78 9.48 -28.28 -0.27 -2.05 16 24 C -0.13 -1.46 5.92 -90.91 -0.54 -2.00 16 25 H 0.11 1.36 8.09 -51.93 -0.42 0.94 16 26 C -0.09 -1.84 5.94 -25.08 -0.15 -1.99 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.04 0.89 5.44 -51.93 -0.28 0.61 16 29 H 0.06 1.42 8.05 -51.93 -0.42 1.00 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.82 6.32 -51.93 -0.33 0.49 16 32 H 0.34 4.88 7.84 -39.29 -0.31 4.57 16 33 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 34 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.06 0.60 7.00 -51.93 -0.36 0.23 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.86 7.11 -51.93 -0.37 0.50 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.44 7.94 -51.93 -0.41 1.02 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -29.12 309.12 -9.89 -39.01 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.33 Total: 3.60 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -3.18 Total: -27.54 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.18 Total: -37.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.22 Total: 17.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.12 -9.89 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.202 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds