Wall clock time and date at job start Mon Mar 30 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99630 * 2 1 4 4 H 1.48499 * 109.47223 * 270.00496 * 3 2 1 5 5 H 1.48499 * 109.46941 * 30.00453 * 3 2 1 6 6 H 1.48495 * 109.46868 * 150.00350 * 3 2 1 7 7 C 1.37871 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00444 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99624 * 179.97438 * 7 2 1 10 10 H 1.08993 * 110.81986 * 56.65868 * 9 7 2 11 11 C 1.55238 * 110.89800 * 293.21103 * 9 7 2 12 12 C 1.54266 * 104.23333 * 203.79412 * 11 9 7 13 13 C 1.53869 * 106.59800 * 23.61579 * 12 11 9 14 14 H 1.09001 * 110.02983 * 240.71432 * 13 12 11 15 15 N 1.46899 * 110.07751 * 119.30541 * 13 12 11 16 16 C 1.46901 * 111.00065 * 87.80629 * 15 13 12 17 17 H 1.09000 * 109.35402 * 35.27931 * 16 15 13 18 18 C 1.52882 * 109.35584 * 275.69941 * 16 15 13 19 19 C 1.56478 * 106.95584 * 183.54609 * 18 16 15 20 20 C 1.52869 * 107.86843 * 75.81123 * 19 18 16 21 21 C 1.52077 * 110.50912 * 304.49736 * 20 19 18 22 22 H 1.09004 * 114.26470 * 166.23491 * 21 20 19 23 23 C 1.49176 * 119.09457 * 309.91741 * 21 20 19 24 24 C 1.52064 * 120.02477 * 21.69837 * 21 20 19 25 25 H 1.09004 * 117.25810 * 144.43742 * 24 21 20 26 26 C 1.54266 * 106.60031 * 359.97438 * 13 12 11 27 27 H 0.96990 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.09005 * 110.46917 * 85.10442 * 11 9 7 29 29 H 1.09007 * 110.58541 * 322.54362 * 11 9 7 30 30 H 1.08999 * 110.03060 * 264.32313 * 12 11 9 31 31 H 1.09003 * 110.02805 * 142.89578 * 12 11 9 32 32 H 1.00897 * 110.99938 * 323.85984 * 15 13 12 33 33 H 1.08999 * 109.61495 * 304.99546 * 18 16 15 34 34 H 1.09004 * 109.62071 * 65.54226 * 18 16 15 35 35 H 1.09004 * 110.47969 * 316.00980 * 19 18 16 36 36 H 1.09004 * 109.46348 * 195.02556 * 19 18 16 37 37 H 1.08992 * 109.26912 * 184.22995 * 20 19 18 38 38 H 1.08996 * 109.24342 * 64.73939 * 20 19 18 39 39 H 1.08997 * 117.01417 * 2.54074 * 23 21 20 40 40 H 1.08998 * 117.72008 * 217.92345 * 23 21 20 41 41 H 1.09002 * 110.48629 * 95.07240 * 26 13 12 42 42 H 1.08998 * 110.48744 * 217.58143 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8993 -0.6341 0.8499 11 6 4.0648 -0.6220 -1.3341 12 6 5.4783 -1.2290 -1.4496 13 6 5.4756 -2.5136 -0.6026 14 1 6.2143 -2.4363 0.1952 15 7 5.7702 -3.6769 -1.4497 16 6 7.2184 -3.9027 -1.5488 17 1 7.6894 -3.6487 -0.5992 18 6 7.7955 -3.0143 -2.6511 19 6 9.3159 -3.3647 -2.7704 20 6 9.4330 -4.7014 -3.5030 21 6 8.6202 -5.7719 -2.7916 22 1 8.4643 -6.6785 -3.3764 23 6 8.7934 -5.9570 -1.3216 24 6 7.4809 -5.3731 -1.8667 25 1 6.6031 -6.0190 -1.8488 26 6 4.0608 -2.6420 -0.0012 27 1 -0.4850 0.8399 0.0004 28 1 4.1193 0.4657 -1.2887 29 1 3.4444 -0.9372 -2.1731 30 1 6.2183 -0.5283 -1.0631 31 1 5.6978 -1.4684 -2.4902 32 1 5.3573 -3.5721 -2.3644 33 1 7.2627 -3.1965 -3.5844 34 1 7.6945 -1.9667 -2.3673 35 1 9.7667 -3.4486 -1.7816 36 1 9.8238 -2.5882 -3.3424 37 1 10.4795 -5.0047 -3.5327 38 1 9.0629 -4.5864 -4.5217 39 1 9.4756 -5.2753 -0.8137 40 1 8.7689 -6.9748 -0.9324 41 1 3.4387 -3.2853 -0.6236 42 1 4.1123 -3.0309 1.0157 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393508902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:50 Heat of formation + Delta-G solvation = -13.908520 kcal Electronic energy + Delta-G solvation = -18750.985255 eV Core-core repulsion = 16115.505222 eV Total energy + Delta-G solvation = -2635.480033 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88895 -39.22274 -35.77887 -34.19692 -33.38081 -30.49927 -29.87805 -27.88856 -25.55805 -24.35284 -23.50638 -21.94548 -21.19556 -20.89089 -19.27422 -18.76195 -17.60451 -16.76037 -16.31844 -15.77383 -15.16654 -15.12299 -14.81316 -14.65042 -14.37986 -14.10295 -13.98484 -13.68807 -13.18434 -12.95830 -12.75628 -12.47728 -12.32820 -12.13361 -11.96850 -11.88742 -11.57891 -11.50484 -11.47764 -11.27019 -11.15368 -11.01904 -10.72498 -10.66719 -10.43889 -9.14979 -8.27377 -6.30191 1.32400 1.35790 1.46719 2.35533 2.94346 3.07507 3.18713 3.75623 3.91583 3.93388 3.99960 4.06891 4.13687 4.22601 4.32852 4.34986 4.49010 4.56000 4.67774 4.69938 4.74348 4.85102 4.89427 4.94625 4.98533 5.02543 5.05449 5.11073 5.15108 5.20740 5.22302 5.30647 5.34860 5.42546 5.44546 5.50091 5.54069 5.67458 5.81569 6.32570 6.37288 6.58084 6.76912 7.35097 8.89991 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.046380 B = 0.004713 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.569437 B = 5939.167816 C = 6286.849943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.245 1.245 7 C -0.511 4.511 8 H 0.029 0.971 9 C 0.003 3.997 10 H 0.030 0.970 11 C -0.125 4.125 12 C -0.139 4.139 13 C 0.098 3.902 14 H 0.080 0.920 15 N -0.684 5.684 16 C 0.123 3.877 17 H 0.071 0.929 18 C -0.148 4.148 19 C -0.116 4.116 20 C -0.089 4.089 21 C -0.135 4.135 22 H 0.100 0.900 23 C -0.177 4.177 24 C -0.149 4.149 25 H 0.097 0.903 26 C -0.089 4.089 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.342 0.658 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.825 -7.313 -6.540 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.549 4.549 8 H 0.047 0.953 9 C -0.016 4.016 10 H 0.048 0.952 11 C -0.163 4.163 12 C -0.178 4.178 13 C -0.012 4.012 14 H 0.098 0.902 15 N -0.313 5.313 16 C 0.014 3.986 17 H 0.090 0.910 18 C -0.187 4.187 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.153 4.153 22 H 0.118 0.882 23 C -0.214 4.214 24 C -0.168 4.168 25 H 0.116 0.884 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.592 -7.694 -6.018 24.613 hybrid contribution -0.473 1.390 -0.432 1.531 sum 22.119 -6.304 -6.450 23.887 Atomic orbital electron populations 1.70069 1.08304 1.27905 1.53326 1.25898 0.95368 1.03062 0.94319 0.85837 0.79421 0.78676 0.79052 1.19165 1.22150 1.16818 1.21355 0.91649 0.92680 1.49261 0.95311 1.20143 0.93074 0.94599 0.93767 0.95196 1.22653 0.96177 0.98162 0.99332 1.22914 0.96385 0.98154 1.00310 1.22123 0.96514 0.87706 0.94877 0.90183 1.60606 1.11555 1.40790 1.18344 1.21086 0.87052 0.92699 0.97796 0.91038 1.22949 0.96937 0.99510 0.99276 1.22111 0.95017 0.97299 1.00968 1.20890 0.99652 0.93214 0.98826 1.21423 1.00068 1.00811 0.93048 0.88182 1.22648 0.99449 1.02382 0.96944 1.22149 0.92512 0.96228 1.05889 0.88449 1.22160 0.94966 0.96385 0.99215 0.92689 0.94184 0.93300 0.91161 0.90736 0.83825 0.91489 0.91902 0.91599 0.91030 0.90575 0.91378 0.88601 0.88669 0.93271 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.94 45.26 24.81 68.60 1.70 46.96 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.24 -10.81 6.45 99.48 0.64 -10.16 16 7 C -0.51 -29.88 9.09 25.60 0.23 -29.64 16 8 H 0.03 1.87 8.01 -2.91 -0.02 1.85 16 9 C 0.00 0.16 2.28 -10.13 -0.02 0.13 16 10 H 0.03 1.41 7.02 -2.39 -0.02 1.39 16 11 C -0.13 -5.09 5.34 31.79 0.17 -4.92 16 12 C -0.14 -4.23 5.14 31.32 0.16 -4.07 16 13 C 0.10 3.03 3.22 45.64 0.15 3.17 16 14 H 0.08 2.32 7.43 -2.39 -0.02 2.30 16 15 N -0.68 -18.60 5.97 -466.47 -2.79 -21.39 16 16 C 0.12 2.71 2.35 44.78 0.11 2.82 16 17 H 0.07 1.64 7.34 -2.39 -0.02 1.62 16 18 C -0.15 -2.80 4.53 31.77 0.14 -2.66 16 19 C -0.12 -1.77 5.81 31.76 0.18 -1.58 16 20 C -0.09 -1.26 5.92 30.25 0.18 -1.08 16 21 C -0.14 -2.23 5.91 -12.63 -0.07 -2.30 16 22 H 0.10 1.54 8.14 -2.38 -0.02 1.53 16 23 C -0.18 -3.02 9.48 29.59 0.28 -2.74 16 24 C -0.15 -3.06 5.92 -10.98 -0.07 -3.12 16 25 H 0.10 2.29 8.09 -2.39 -0.02 2.27 16 26 C -0.09 -3.57 5.94 31.66 0.19 -3.38 16 27 H 0.26 15.82 8.31 -92.72 -0.77 15.05 16 28 H 0.04 1.62 5.44 -2.38 -0.01 1.61 16 29 H 0.05 2.11 8.05 -2.38 -0.02 2.09 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.00 6.32 -2.39 -0.02 1.99 16 32 H 0.34 9.30 7.84 -89.70 -0.70 8.60 16 33 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 34 H 0.06 1.25 6.40 -2.39 -0.02 1.23 16 35 H 0.07 1.00 7.00 -2.39 -0.02 0.98 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.55 7.11 -2.39 -0.02 1.53 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 2.13 7.94 -2.39 -0.02 2.11 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -64.47 309.12 1.52 -62.95 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.22 Total: 20.62 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 2.09 Total: -48.33 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.49 Total: -82.20 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.70 Total: 46.96 kcal Total: -64.47 1.52 -62.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.037 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds