Wall clock time and date at job start Mon Mar 30 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99856 * 2 1 4 4 H 1.48500 * 109.47027 * 270.00161 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99891 * 3 2 1 6 6 H 1.48493 * 109.47138 * 149.99685 * 3 2 1 7 7 C 1.37877 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00038 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.67444 * 61.78298 * 9 7 2 11 11 C 1.54893 * 110.75896 * 298.55173 * 9 7 2 12 12 C 1.54264 * 104.19725 * 203.55670 * 11 9 7 13 13 C 1.53875 * 106.59988 * 23.61050 * 12 11 9 14 14 H 1.09003 * 110.03181 * 240.66731 * 13 12 11 15 15 N 1.46895 * 110.03498 * 119.28566 * 13 12 11 16 16 C 1.46897 * 111.00231 * 87.09344 * 15 13 12 17 17 H 1.08998 * 109.23232 * 325.51290 * 16 15 13 18 18 C 1.52867 * 109.26842 * 85.00059 * 16 15 13 19 19 C 1.53306 * 108.58960 * 175.15787 * 18 16 15 20 20 C 1.52881 * 108.57970 * 285.55564 * 19 18 16 21 21 C 1.52703 * 110.14965 * 54.52001 * 20 19 18 22 22 H 1.09009 * 115.38456 * 127.17466 * 21 20 19 23 23 C 1.53654 * 116.03450 * 269.79309 * 21 20 19 24 24 C 1.49176 * 60.26143 * 111.30274 * 23 21 20 25 25 H 1.09004 * 116.23614 * 106.63058 * 24 23 21 26 26 C 1.54265 * 106.63772 * 359.97136 * 13 12 11 27 27 H 0.96994 * 120.00601 * 0.02562 * 1 2 3 28 28 H 1.08994 * 110.48849 * 84.87776 * 11 9 7 29 29 H 1.09002 * 110.59764 * 322.29169 * 11 9 7 30 30 H 1.09001 * 110.03418 * 264.32180 * 12 11 9 31 31 H 1.09002 * 110.03119 * 142.89131 * 12 11 9 32 32 H 1.00904 * 110.99682 * 211.04641 * 15 13 12 33 33 H 1.08991 * 109.62247 * 55.42545 * 18 16 15 34 34 H 1.09005 * 109.61669 * 294.88637 * 18 16 15 35 35 H 1.08998 * 109.61887 * 45.28283 * 19 18 16 36 36 H 1.09003 * 109.61552 * 165.64680 * 19 18 16 37 37 H 1.08998 * 109.35146 * 174.73104 * 20 19 18 38 38 H 1.09005 * 109.35515 * 294.44887 * 20 19 18 39 39 H 1.08991 * 117.54171 * 219.06888 * 23 21 20 40 40 H 1.08999 * 117.53220 * 4.24269 * 23 21 20 41 41 H 1.08998 * 110.48477 * 95.09656 * 26 13 12 42 42 H 1.08999 * 110.48998 * 217.73736 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8967 -0.7112 0.8982 11 6 4.0600 -0.5026 -1.2730 12 6 5.4760 -1.0908 -1.4427 13 6 5.4789 -2.4467 -0.7152 14 1 6.2181 -2.4391 0.0858 15 7 5.7778 -3.5268 -1.6649 16 6 7.2272 -3.7253 -1.7973 17 1 7.7311 -2.7630 -1.7073 18 6 7.7127 -4.6550 -0.6853 19 6 9.2007 -4.9487 -0.9086 20 6 9.3344 -5.9258 -2.0768 21 6 8.6185 -5.3749 -3.3079 22 1 9.2183 -5.3318 -4.2171 23 6 7.1404 -5.7662 -3.4599 24 6 7.5041 -4.3510 -3.1598 25 1 7.3965 -3.6414 -3.9802 26 6 4.0651 -2.6357 -0.1277 27 1 -0.4851 0.8399 -0.0004 28 1 4.1101 0.5767 -1.1294 29 1 3.4408 -0.7432 -2.1371 30 1 6.2132 -0.4249 -0.9943 31 1 5.6963 -1.2342 -2.5006 32 1 5.3187 -4.3836 -1.3943 33 1 7.1476 -5.5865 -0.7142 34 1 7.5763 -4.1711 0.2819 35 1 9.7252 -4.0227 -1.1442 36 1 9.6257 -5.3909 -0.0075 37 1 10.3898 -6.0709 -2.3072 38 1 8.8901 -6.8821 -1.8005 39 1 6.7800 -5.9943 -4.4630 40 1 6.6866 -6.3434 -2.6544 41 1 3.4458 -3.2233 -0.8055 42 1 4.1192 -3.1124 0.8510 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393508903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:53 Heat of formation + Delta-G solvation = 3.352316 kcal Electronic energy + Delta-G solvation = -18742.765196 eV Core-core repulsion = 16108.033648 eV Total energy + Delta-G solvation = -2634.731547 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03512 -37.69672 -34.32189 -33.00275 -32.07552 -29.20348 -28.30457 -26.48750 -24.13353 -23.30748 -22.63201 -20.92336 -19.48068 -19.18853 -18.39506 -16.70534 -16.49543 -15.36107 -15.03501 -14.84326 -14.15851 -13.96415 -13.58848 -13.52111 -12.92229 -12.73249 -12.42615 -12.34511 -12.02496 -11.55294 -11.35775 -11.16438 -11.07583 -10.84886 -10.66504 -10.44461 -10.32787 -10.05950 -10.00515 -9.86708 -9.64292 -9.60826 -9.27812 -8.93003 -8.47591 -8.04064 -6.01216 -3.99224 3.34166 3.42227 3.44667 3.67608 4.36160 4.48069 4.50451 4.69395 4.84774 4.99894 5.05685 5.14306 5.28446 5.30473 5.36590 5.45197 5.46161 5.57293 5.58386 5.73555 5.77287 5.80398 5.94355 5.95326 6.05786 6.15869 6.17127 6.21619 6.25330 6.37504 6.44283 6.56898 6.70839 6.75214 6.89220 7.00635 7.17804 7.49738 7.65046 7.72571 7.85740 8.59863 9.02772 9.62436 11.12389 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.046205 B = 0.004619 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.848048 B = 6060.836207 C = 6129.773331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.072 0.928 9 C 0.015 3.985 10 H 0.029 0.971 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.082 3.918 14 H 0.036 0.964 15 N -0.675 5.675 16 C 0.118 3.882 17 H 0.081 0.919 18 C -0.153 4.153 19 C -0.115 4.115 20 C -0.086 4.086 21 C -0.162 4.162 22 H 0.099 0.901 23 C -0.168 4.168 24 C -0.114 4.114 25 H 0.096 0.904 26 C -0.107 4.107 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.338 0.662 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.806 -9.760 -4.164 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.545 4.545 8 H 0.090 0.910 9 C -0.004 4.004 10 H 0.047 0.953 11 C -0.164 4.164 12 C -0.151 4.151 13 C -0.027 4.027 14 H 0.054 0.946 15 N -0.304 5.304 16 C 0.007 3.993 17 H 0.099 0.901 18 C -0.192 4.192 19 C -0.153 4.153 20 C -0.123 4.123 21 C -0.181 4.181 22 H 0.118 0.882 23 C -0.205 4.205 24 C -0.133 4.133 25 H 0.114 0.886 26 C -0.145 4.145 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.576 -9.227 -4.719 21.271 hybrid contribution 0.544 0.552 0.728 1.064 sum 19.120 -8.674 -3.991 21.372 Atomic orbital electron populations 1.69906 1.06298 1.26809 1.51349 1.24990 0.94621 0.98989 0.94539 0.86877 0.79832 0.83685 0.78276 1.20459 1.22412 1.19136 1.21014 0.88795 0.94346 1.50337 0.90955 1.20033 0.96315 0.91069 0.92957 0.95332 1.22745 0.94326 0.97984 1.01372 1.22198 0.98054 0.94771 1.00065 1.22279 0.97325 0.91480 0.91617 0.94621 1.60728 1.07494 1.10153 1.52070 1.21005 0.89329 0.97436 0.91480 0.90061 1.22381 0.96692 1.00422 0.99677 1.21520 0.96346 0.99646 0.97791 1.21001 0.99715 0.98170 0.93443 1.22231 0.90811 1.05439 0.99652 0.88238 1.22475 0.96916 0.98604 1.02483 1.21215 1.00653 0.92540 0.98919 0.88551 1.22478 0.93232 1.00054 0.98775 0.92791 0.94085 0.91454 0.93641 0.91744 0.84287 0.91743 0.91857 0.91735 0.92166 0.91873 0.91929 0.89169 0.89108 0.91079 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.88 22.29 24.46 -169.99 -4.16 18.14 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.44 6.48 56.52 0.37 -6.07 16 7 C -0.51 -14.39 9.14 -34.44 -0.31 -14.71 16 8 H 0.07 2.22 8.03 -52.48 -0.42 1.80 16 9 C 0.02 0.37 2.29 -89.74 -0.21 0.16 16 10 H 0.03 0.69 7.37 -51.93 -0.38 0.31 16 11 C -0.13 -2.77 5.08 -25.07 -0.13 -2.90 16 12 C -0.11 -2.03 6.41 -25.61 -0.16 -2.19 16 13 C 0.08 1.37 3.02 -66.60 -0.20 1.17 16 14 H 0.04 0.57 7.20 -51.93 -0.37 0.20 16 15 N -0.67 -9.74 5.84 -98.94 -0.58 -10.32 16 16 C 0.12 1.43 2.47 -68.06 -0.17 1.26 16 17 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 18 C -0.15 -1.63 4.93 -26.64 -0.13 -1.76 16 19 C -0.11 -1.05 5.93 -26.63 -0.16 -1.21 16 20 C -0.09 -0.74 5.83 -26.94 -0.16 -0.90 16 21 C -0.16 -1.55 6.29 -90.91 -0.57 -2.12 16 22 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 23 C -0.17 -1.72 9.56 -28.27 -0.27 -1.99 16 24 C -0.11 -1.29 5.37 -93.25 -0.50 -1.79 16 25 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 26 C -0.11 -2.12 5.68 -25.03 -0.14 -2.26 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.04 0.92 4.90 -51.93 -0.25 0.66 16 29 H 0.07 1.56 8.05 -51.93 -0.42 1.14 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 32 H 0.34 4.72 8.01 -39.29 -0.31 4.41 16 33 H 0.06 0.69 7.01 -51.93 -0.36 0.32 16 34 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 35 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.94 7.26 -51.93 -0.38 0.56 16 41 H 0.07 1.46 7.87 -51.93 -0.41 1.05 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.45 312.67 -9.94 -39.39 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.48 Total: 2.70 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -3.21 Total: -27.29 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.20 Total: -37.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.16 Total: 18.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.45 -9.94 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393508903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.744 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds